Wall clock time and date at job start Tue Mar 31 2020 15:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46815 * 2 1 4 4 C 1.53000 * 109.47474 * 120.00243 * 2 1 3 5 5 C 1.52995 * 109.47215 * 179.97438 * 4 2 1 6 6 C 1.52997 * 109.47234 * 300.00067 * 5 4 2 7 7 C 1.53000 * 109.47074 * 59.99846 * 6 5 4 8 8 C 1.52995 * 109.47215 * 300.00165 * 7 6 5 9 9 C 1.53002 * 109.46915 * 180.02562 * 8 7 6 10 10 N 1.46498 * 109.47290 * 64.62343 * 9 8 7 11 11 C 1.36938 * 119.99679 * 185.01251 * 10 9 8 12 12 H 1.07998 * 120.00228 * 359.97438 * 11 10 9 13 13 C 1.38818 * 119.99461 * 180.02562 * 11 10 9 14 14 N 1.31613 * 120.00332 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99827 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47194 * 59.99319 * 15 13 11 17 17 H 1.48490 * 109.47482 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.47128 * 299.99817 * 15 13 11 19 19 N 1.46501 * 109.47137 * 299.99721 * 8 7 6 20 20 C 1.34772 * 120.00104 * 188.44095 * 19 8 7 21 21 O 1.21284 * 120.00103 * 5.75509 * 20 19 8 22 22 C 1.50704 * 120.00208 * 185.75149 * 20 19 8 23 23 C 1.53003 * 109.47175 * 180.02562 * 22 20 19 24 24 C 1.54267 * 110.03231 * 292.16706 * 23 22 20 25 25 C 1.54886 * 104.19487 * 217.10605 * 24 23 22 26 26 C 1.54886 * 102.74894 * 37.94350 * 25 24 23 27 27 C 1.53875 * 110.02731 * 175.00044 * 23 22 20 28 28 H 1.08998 * 109.46958 * 184.41187 * 1 2 3 29 29 H 1.08997 * 109.47051 * 304.41199 * 1 2 3 30 30 H 1.09002 * 109.47121 * 64.41188 * 1 2 3 31 31 H 1.08998 * 109.46795 * 300.00203 * 4 2 1 32 32 H 1.09002 * 109.46888 * 59.99398 * 4 2 1 33 33 H 1.09003 * 109.47192 * 60.00310 * 5 4 2 34 34 H 1.09001 * 109.46877 * 179.97438 * 5 4 2 35 35 H 1.09002 * 109.47207 * 180.02562 * 6 5 4 36 36 H 1.09001 * 109.47062 * 299.99696 * 6 5 4 37 37 H 1.08998 * 109.46795 * 179.97438 * 7 6 5 38 38 H 1.09002 * 109.46888 * 60.00650 * 7 6 5 39 39 H 1.08999 * 109.46744 * 184.62408 * 9 8 7 40 40 H 1.09001 * 109.46735 * 304.62109 * 9 8 7 41 41 H 0.96992 * 120.00080 * 5.00761 * 10 9 8 42 42 H 0.97001 * 120.00073 * 180.02562 * 14 13 11 43 43 H 0.97000 * 120.00154 * 8.44680 * 19 8 7 44 44 H 1.08998 * 109.47138 * 299.99973 * 22 20 19 45 45 H 1.09000 * 109.47078 * 60.00067 * 22 20 19 46 46 H 1.09000 * 110.01454 * 53.60697 * 23 22 20 47 47 H 1.09007 * 110.48695 * 335.78558 * 24 23 22 48 48 H 1.08999 * 110.48535 * 98.42563 * 24 23 22 49 49 H 1.08996 * 110.75502 * 279.62502 * 25 24 23 50 50 H 1.09003 * 110.75616 * 156.25645 * 25 24 23 51 51 H 1.09000 * 110.48601 * 203.38021 * 26 25 24 52 52 H 1.08997 * 110.48624 * 80.73605 * 26 25 24 53 53 H 1.09002 * 110.02754 * 238.56580 * 27 23 22 54 54 H 1.08990 * 110.03796 * 359.97438 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5701 -0.7218 1.2488 6 6 4.0795 -1.4433 -0.0005 7 6 3.5694 -0.7220 -1.2497 8 6 2.0395 -0.7215 -1.2493 9 6 1.5295 -0.0008 -2.4988 10 7 1.9242 -0.7534 -3.6921 11 6 1.6667 -0.2462 -4.9377 12 1 1.1723 0.7084 -5.0405 13 6 2.0403 -0.9597 -6.0684 14 7 2.6424 -2.1233 -5.9432 15 14 1.6884 -0.2682 -7.7677 16 1 2.3781 1.0377 -7.9232 17 1 2.1830 -1.2147 -8.7994 18 1 0.2248 -0.0775 -7.9312 19 7 1.5507 -2.1026 -1.2491 20 6 0.2374 -2.3526 -1.4200 21 8 -0.5242 -1.4447 -1.6779 22 6 -0.2847 -3.7605 -1.2910 23 6 -1.7958 -3.7680 -1.5306 24 6 -2.5166 -3.0320 -0.3823 25 6 -3.8175 -3.8448 -0.1676 26 6 -3.3458 -5.3056 -0.3744 27 6 -2.3229 -5.2136 -1.5256 28 1 -0.3633 -1.0246 0.0791 29 1 -0.3633 0.5808 0.8478 30 1 -0.3633 0.4439 -0.9269 31 1 1.6768 -0.2075 2.1392 32 1 1.6767 -1.7489 1.2492 33 1 3.9338 0.3057 1.2487 34 1 3.9334 -1.2353 2.1390 35 1 5.1695 -1.4441 -0.0005 36 1 3.7159 -2.4709 -0.0002 37 1 3.9328 -1.2358 -2.1396 38 1 3.9332 0.3055 -1.2499 39 1 0.4427 0.0719 -2.4581 40 1 1.9592 1.0000 -2.5418 41 1 2.3680 -1.6109 -3.5998 42 1 2.9038 -2.6217 -6.7333 43 1 2.1722 -2.8370 -1.1258 44 1 0.2030 -4.3979 -2.0285 45 1 -0.0733 -4.1360 -0.2897 46 1 -2.0249 -3.2902 -2.4831 47 1 -1.9062 -3.0435 0.5208 48 1 -2.7502 -2.0078 -0.6729 49 1 -4.5694 -3.5731 -0.9085 50 1 -4.2000 -3.7018 0.8430 51 1 -4.1847 -5.9406 -0.6593 52 1 -2.8694 -5.6842 0.5299 53 1 -2.8087 -5.4371 -2.4754 54 1 -1.5023 -5.9098 -1.3529 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753529423.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:35 Heat of formation + Delta-G solvation = -56.942133 kcal Electronic energy + Delta-G solvation = -30396.769199 eV Core-core repulsion = 26753.164510 eV Total energy + Delta-G solvation = -3643.604690 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.02008 -39.64391 -38.17709 -36.36081 -34.54172 -33.71513 -33.05244 -32.10617 -30.70309 -29.48356 -27.73751 -26.72088 -26.36406 -24.69846 -22.41097 -22.12523 -21.57302 -21.36941 -20.33027 -19.96717 -19.16607 -18.14501 -17.10704 -16.81692 -16.51129 -16.14454 -15.81548 -15.66081 -15.21660 -14.95593 -14.90242 -14.82130 -14.56452 -14.22435 -14.14266 -13.87970 -13.50831 -13.32473 -13.09397 -12.91584 -12.78700 -12.67531 -12.64894 -12.44990 -12.21923 -12.11326 -11.93665 -11.85853 -11.83263 -11.82211 -11.71550 -11.55994 -11.45722 -11.29669 -11.21034 -11.03550 -10.93381 -10.72623 -10.13876 -9.46862 -8.83494 -7.93404 -5.17195 1.42278 1.45258 1.51179 2.01502 2.46878 2.56680 3.39296 3.70110 3.76873 3.78932 3.81848 3.86681 3.88882 4.14476 4.19300 4.23344 4.39554 4.41775 4.50154 4.55215 4.59023 4.62318 4.63075 4.70108 4.74436 4.78721 4.81661 4.89014 4.94383 4.95131 4.97516 5.03872 5.06670 5.14955 5.17741 5.22046 5.24694 5.26591 5.29744 5.32544 5.39402 5.42919 5.46112 5.47720 5.51950 5.53784 5.59584 5.62228 5.78847 5.92477 6.30081 6.90075 7.36772 7.65024 8.15659 8.43013 9.29712 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.008635 B = 0.005444 C = 0.003792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3241.664673 B = 5142.509349 C = 7382.326811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.087 4.087 3 H 0.067 0.933 4 C -0.101 4.101 5 C -0.113 4.113 6 C -0.111 4.111 7 C -0.114 4.114 8 C 0.190 3.810 9 C 0.133 3.867 10 N -0.726 5.726 11 C -0.238 4.238 12 H 0.059 0.941 13 C -0.071 4.071 14 N -0.964 5.964 15 Si 0.966 3.034 16 H -0.279 1.279 17 H -0.290 1.290 18 H -0.287 1.287 19 N -0.707 5.707 20 C 0.502 3.498 21 O -0.543 6.543 22 C -0.127 4.127 23 C -0.075 4.075 24 C -0.105 4.105 25 C -0.126 4.126 26 C -0.116 4.116 27 C -0.120 4.120 28 H 0.068 0.932 29 H 0.037 0.963 30 H 0.041 0.959 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.048 0.952 38 H 0.066 0.934 39 H 0.044 0.956 40 H 0.002 0.998 41 H 0.376 0.624 42 H 0.250 0.750 43 H 0.403 0.597 44 H 0.088 0.912 45 H 0.117 0.883 46 H 0.039 0.961 47 H 0.067 0.933 48 H 0.044 0.956 49 H 0.056 0.944 50 H 0.076 0.924 51 H 0.071 0.929 52 H 0.078 0.922 53 H 0.055 0.945 54 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.668 -6.040 20.238 21.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.107 4.107 3 H 0.085 0.915 4 C -0.139 4.139 5 C -0.150 4.150 6 C -0.149 4.149 7 C -0.153 4.153 8 C 0.104 3.896 9 C 0.006 3.994 10 N -0.368 5.368 11 C -0.370 4.370 12 H 0.077 0.923 13 C -0.263 4.263 14 N -0.616 5.616 15 Si 0.795 3.205 16 H -0.206 1.206 17 H -0.216 1.216 18 H -0.214 1.214 19 N -0.360 5.360 20 C 0.291 3.709 21 O -0.421 6.421 22 C -0.167 4.167 23 C -0.095 4.095 24 C -0.143 4.143 25 C -0.163 4.163 26 C -0.154 4.154 27 C -0.157 4.157 28 H 0.087 0.913 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.067 0.933 38 H 0.085 0.915 39 H 0.061 0.939 40 H 0.020 0.980 41 H 0.209 0.791 42 H 0.059 0.941 43 H 0.239 0.761 44 H 0.107 0.893 45 H 0.135 0.865 46 H 0.058 0.942 47 H 0.086 0.914 48 H 0.063 0.937 49 H 0.075 0.925 50 H 0.095 0.905 51 H 0.090 0.910 52 H 0.096 0.904 53 H 0.074 0.926 54 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.270 -5.256 19.951 21.069 hybrid contribution 0.322 0.180 -1.801 1.838 sum -3.948 -5.076 18.150 19.256 Atomic orbital electron populations 1.22307 0.94714 1.02614 0.99556 1.21434 0.96064 0.98931 0.94294 0.91510 1.21483 0.95837 1.00590 0.95952 1.21521 0.94955 1.00869 0.97697 1.21521 1.00781 0.99346 0.93246 1.21692 0.92884 1.01721 0.98964 1.20354 0.93706 0.82072 0.93486 1.21388 0.98756 0.92913 0.86314 1.42228 1.71120 1.22970 1.00522 1.19482 1.30200 1.01869 0.85450 0.92304 1.25364 1.02471 0.97649 1.00814 1.69769 1.47866 1.15196 1.28750 0.85328 0.77479 0.77324 0.80346 1.20578 1.21614 1.21350 1.45840 1.08083 1.07954 1.74140 1.20858 0.82252 0.91671 0.76159 1.90700 1.57994 1.46848 1.46530 1.21849 0.96742 0.93168 1.04956 1.21448 0.92970 0.96388 0.98645 1.22285 0.96514 0.98218 0.97270 1.22525 0.96758 0.95481 1.01556 1.22330 0.98363 0.96310 0.98371 1.22220 0.99344 0.95042 0.99143 0.91310 0.94439 0.94052 0.91238 0.91702 0.92094 0.90100 0.90881 0.91236 0.93280 0.91497 0.93860 0.98028 0.79137 0.94140 0.76088 0.89329 0.86461 0.94211 0.91384 0.93667 0.92539 0.90540 0.91033 0.90361 0.92586 0.90360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.17 7.28 71.98 0.52 -3.64 16 2 C -0.09 -2.41 2.07 -10.79 -0.02 -2.44 16 3 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 4 C -0.10 -2.06 5.05 30.59 0.15 -1.91 16 5 C -0.11 -2.02 5.92 30.59 0.18 -1.84 16 6 C -0.11 -2.31 5.75 30.59 0.18 -2.14 16 7 C -0.11 -3.41 4.69 30.59 0.14 -3.27 16 8 C 0.19 6.18 0.32 3.60 0.00 6.18 16 9 C 0.13 5.95 4.46 86.38 0.39 6.33 16 10 N -0.73 -38.55 5.12 -343.45 -1.76 -40.31 16 11 C -0.24 -14.19 9.99 84.03 0.84 -13.35 16 12 H 0.06 3.51 7.83 -2.91 -0.02 3.49 16 13 C -0.07 -4.23 5.50 84.86 0.47 -3.76 16 14 N -0.96 -59.82 13.06 21.65 0.28 -59.54 16 15 Si 0.97 48.54 29.55 68.60 2.03 50.56 16 16 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 17 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 18 H -0.29 -14.25 7.11 99.48 0.71 -13.55 16 19 N -0.71 -21.10 3.52 -422.93 -1.49 -22.59 16 20 C 0.50 16.30 5.68 87.66 0.50 16.80 16 21 O -0.54 -21.44 8.23 -3.04 -0.03 -21.47 16 22 C -0.13 -3.20 4.83 29.85 0.14 -3.06 16 23 C -0.08 -2.00 2.55 -10.07 -0.03 -2.02 16 24 C -0.11 -2.58 5.43 31.67 0.17 -2.41 16 25 C -0.13 -2.47 6.91 31.88 0.22 -2.25 16 26 C -0.12 -1.96 6.83 31.67 0.22 -1.75 16 27 C -0.12 -2.47 6.46 31.32 0.20 -2.27 16 28 H 0.07 2.14 4.94 -2.45 -0.01 2.12 16 29 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.04 1.57 5.39 -2.39 -0.01 1.55 16 31 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.06 1.29 7.60 -2.39 -0.02 1.28 16 33 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.07 1.31 6.70 -2.39 -0.02 1.29 16 37 H 0.05 1.77 7.27 -2.39 -0.02 1.75 16 38 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.04 2.15 4.27 -2.39 -0.01 2.14 16 40 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 41 H 0.38 20.48 6.60 -92.71 -0.61 19.87 16 42 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 43 H 0.40 10.17 7.08 -92.71 -0.66 9.52 16 44 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 45 H 0.12 2.13 8.00 -2.39 -0.02 2.11 16 46 H 0.04 1.37 7.92 -2.39 -0.02 1.35 16 47 H 0.07 1.51 7.76 -2.38 -0.02 1.49 16 48 H 0.04 1.36 7.66 -2.39 -0.02 1.34 16 49 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 50 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 51 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 52 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 53 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 54 H 0.08 1.39 7.67 -2.39 -0.02 1.37 16 Total: -1.00 -70.43 389.50 2.92 -67.51 By element: Atomic # 1 Polarization: 43.00 SS G_CDS: -0.39 Total: 42.61 kcal Atomic # 6 Polarization: -21.06 SS G_CDS: 4.28 Total: -16.78 kcal Atomic # 7 Polarization: -119.47 SS G_CDS: -2.96 Total: -122.44 kcal Atomic # 8 Polarization: -21.44 SS G_CDS: -0.03 Total: -21.47 kcal Atomic # 14 Polarization: 48.54 SS G_CDS: 2.03 Total: 50.56 kcal Total: -70.43 2.92 -67.51 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753529423.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.568 kcal (2) G-P(sol) polarization free energy of solvation -70.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds