Wall clock time and date at job start Tue Mar 31 2020 15:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 110.01700 * 2 1 4 4 C 1.54266 * 110.03121 * 238.61124 * 2 1 3 5 5 C 1.54894 * 104.31305 * 216.98718 * 4 2 1 6 6 C 1.55238 * 102.58338 * 37.93170 * 5 4 2 7 7 C 1.53869 * 110.07634 * 121.41682 * 2 1 3 8 8 H 1.08999 * 110.04012 * 238.59163 * 7 2 1 9 9 C 1.53007 * 110.03216 * 0.02562 * 7 2 1 10 10 C 1.50698 * 109.47316 * 184.99928 * 9 7 2 11 11 O 1.21279 * 119.99697 * 359.97438 * 10 9 7 12 12 N 1.34779 * 120.00029 * 179.97438 * 10 9 7 13 13 C 1.46932 * 120.62831 * 359.71916 * 12 10 9 14 14 C 1.53624 * 108.54233 * 126.36750 * 13 12 10 15 15 C 1.53043 * 109.24030 * 54.85228 * 14 13 12 16 16 C 1.53001 * 109.44702 * 178.49353 * 15 14 13 17 17 C 1.52997 * 109.47611 * 295.06718 * 16 15 14 18 18 N 1.46494 * 109.47175 * 180.02562 * 17 16 15 19 19 C 1.36940 * 120.00074 * 179.97438 * 18 17 16 20 20 H 1.07996 * 119.99925 * 0.02562 * 19 18 17 21 21 C 1.38813 * 120.00404 * 179.97438 * 19 18 17 22 22 N 1.31624 * 119.99637 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00195 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47091 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.46955 * 120.00156 * 23 21 19 26 26 H 1.48496 * 109.46989 * 239.99943 * 23 21 19 27 27 C 1.53039 * 109.54267 * 298.51235 * 15 14 13 28 28 C 1.46917 * 120.63096 * 179.97438 * 12 10 9 29 29 H 1.08994 * 109.47310 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46753 * 299.93794 * 1 2 3 31 31 H 1.09002 * 109.47167 * 59.93435 * 1 2 3 32 32 H 1.09002 * 110.48629 * 335.73471 * 4 2 1 33 33 H 1.08998 * 110.48744 * 98.24375 * 4 2 1 34 34 H 1.08996 * 110.75388 * 156.31523 * 5 4 2 35 35 H 1.08993 * 110.76071 * 279.69749 * 5 4 2 36 36 H 1.09005 * 110.46917 * 203.39204 * 6 5 4 37 37 H 1.09007 * 110.58541 * 80.83124 * 6 5 4 38 38 H 1.09008 * 109.46690 * 305.00203 * 9 7 2 39 39 H 1.08999 * 109.47013 * 64.99436 * 9 7 2 40 40 H 1.08993 * 109.58439 * 246.19768 * 13 12 10 41 41 H 1.08996 * 109.58883 * 6.62736 * 13 12 10 42 42 H 1.09004 * 109.63570 * 294.86444 * 14 13 12 43 43 H 1.08996 * 109.43404 * 174.72486 * 14 13 12 44 44 H 1.09005 * 109.45974 * 58.53609 * 15 14 13 45 45 H 1.08998 * 109.46598 * 55.06818 * 16 15 14 46 46 H 1.09006 * 109.47130 * 175.06445 * 16 15 14 47 47 H 1.09002 * 109.46787 * 299.99927 * 17 16 15 48 48 H 1.08997 * 109.47272 * 59.99716 * 17 16 15 49 49 H 0.96996 * 120.00303 * 359.97438 * 18 17 16 50 50 H 0.96995 * 120.00095 * 180.02562 * 22 21 19 51 51 H 1.09003 * 109.49618 * 301.41356 * 27 15 14 52 52 H 1.08997 * 109.49715 * 181.31321 * 27 15 14 53 53 H 1.09000 * 109.58716 * 353.37736 * 28 12 10 54 54 H 1.09006 * 109.58387 * 113.65653 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0584 -0.7549 -1.2372 5 6 3.3159 -1.4992 -0.7235 6 6 2.8891 -1.9398 0.7026 7 6 2.0582 -0.7533 1.2333 8 1 2.6876 -0.0949 1.8319 9 6 0.8879 -1.2677 2.0742 10 6 1.4155 -1.8950 3.3388 11 8 2.6099 -1.9279 3.5468 12 7 0.5600 -2.4195 4.2386 13 6 -0.8899 -2.3816 4.0035 14 6 -1.4430 -3.8091 4.1315 15 6 -1.0419 -4.3852 5.4914 16 6 -1.6222 -5.7932 5.6393 17 6 -3.1500 -5.7150 5.6657 18 7 -3.7055 -7.0630 5.8079 19 6 -5.0622 -7.2430 5.8559 20 1 -5.7226 -6.3911 5.7884 21 6 -5.5887 -8.5203 5.9901 22 7 -4.7838 -9.5586 6.0718 23 14 -7.4393 -8.7657 6.0562 24 1 -8.1174 -7.4492 5.9454 25 1 -7.8637 -9.6368 4.9309 26 1 -7.8080 -9.4061 7.3443 27 6 0.4839 -4.4497 5.5902 28 6 1.0592 -3.0349 5.4757 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5129 0.8906 31 1 -0.3633 0.5149 -0.8894 32 1 1.3145 -1.4658 -1.5968 33 1 2.3266 -0.0528 -2.0267 34 1 3.5346 -2.3649 -1.3486 35 1 4.1722 -0.8264 -0.6799 36 1 3.7657 -2.1024 1.3297 37 1 2.2800 -2.8427 0.6585 38 1 0.2299 -0.4365 2.3280 39 1 0.3306 -2.0114 1.5047 40 1 -1.3631 -1.7357 4.7429 41 1 -1.0878 -2.0001 3.0018 42 1 -1.0338 -4.4331 3.3370 43 1 -2.5298 -3.7853 4.0527 44 1 -1.4306 -3.7471 6.2851 45 1 -1.3043 -6.4074 4.7969 46 1 -1.2651 -6.2376 6.5684 47 1 -3.4678 -5.1007 6.5081 48 1 -3.5071 -5.2706 4.7367 49 1 -3.1124 -7.8282 5.8681 50 1 -5.1517 -10.4512 6.1652 51 1 0.8750 -5.0677 4.7819 52 1 0.7685 -4.8817 6.5496 53 1 2.1477 -3.0845 5.4458 54 1 0.7440 -2.4398 6.3329 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753569575.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:49 Heat of formation + Delta-G solvation = -78.406520 kcal Electronic energy + Delta-G solvation = -27925.155987 eV Core-core repulsion = 24280.620532 eV Total energy + Delta-G solvation = -3644.535455 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.45141 -39.76416 -38.62134 -36.84977 -35.03175 -33.34111 -32.69225 -32.09179 -31.45239 -29.89036 -27.35419 -26.21767 -25.72381 -24.44886 -24.24860 -22.54303 -21.70968 -21.36788 -20.13225 -19.24731 -19.12794 -18.24808 -17.23170 -16.68722 -16.52096 -16.29195 -15.85872 -15.57225 -15.46899 -15.34808 -15.04202 -14.83007 -14.58910 -14.43690 -14.29511 -14.03658 -13.81283 -13.34372 -13.26131 -13.08556 -13.02583 -12.86905 -12.79491 -12.48770 -12.29101 -12.17690 -12.05464 -11.96281 -11.82465 -11.66350 -11.61559 -11.57034 -11.49775 -11.40387 -11.33813 -11.18780 -11.11223 -10.88981 -10.63706 -9.59806 -8.98971 -7.95453 -5.24513 1.47514 1.48636 1.58820 1.68406 2.07539 2.56231 3.38462 3.49948 3.67944 3.69497 3.73529 3.81031 3.81751 3.98345 4.15021 4.22458 4.32316 4.36132 4.37038 4.43950 4.44748 4.50501 4.55040 4.59204 4.64131 4.68198 4.74715 4.77045 4.80038 4.85851 4.88369 4.90829 4.94232 4.99477 5.06646 5.07544 5.09977 5.11834 5.17655 5.23424 5.29849 5.30747 5.41631 5.42640 5.44359 5.50048 5.51992 5.56471 5.62160 5.63933 6.27579 6.47391 7.23405 7.32800 8.10667 8.32245 9.28706 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.018029 B = 0.002169 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.690058 B =12905.669520 C =13643.374499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.090 4.090 3 H 0.075 0.925 4 C -0.118 4.118 5 C -0.127 4.127 6 C -0.114 4.114 7 C -0.070 4.070 8 H 0.060 0.940 9 C -0.130 4.130 10 C 0.505 3.495 11 O -0.584 6.584 12 N -0.613 5.613 13 C 0.108 3.892 14 C -0.130 4.130 15 C -0.073 4.073 16 C -0.109 4.109 17 C 0.152 3.848 18 N -0.752 5.752 19 C -0.243 4.243 20 H 0.078 0.922 21 C -0.081 4.081 22 N -0.973 5.973 23 Si 0.975 3.025 24 H -0.263 1.263 25 H -0.293 1.293 26 H -0.294 1.294 27 C -0.121 4.121 28 C 0.113 3.887 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.046 0.954 37 H 0.054 0.946 38 H 0.119 0.881 39 H 0.108 0.892 40 H 0.087 0.913 41 H 0.108 0.892 42 H 0.057 0.943 43 H 0.083 0.917 44 H 0.081 0.919 45 H 0.050 0.950 46 H 0.054 0.946 47 H 0.019 0.981 48 H 0.029 0.971 49 H 0.371 0.629 50 H 0.251 0.749 51 H 0.052 0.948 52 H 0.080 0.920 53 H 0.074 0.926 54 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.384 23.485 -11.890 29.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.108 4.108 3 H 0.093 0.907 4 C -0.156 4.156 5 C -0.164 4.164 6 C -0.151 4.151 7 C -0.089 4.089 8 H 0.079 0.921 9 C -0.169 4.169 10 C 0.296 3.704 11 O -0.464 6.464 12 N -0.346 5.346 13 C -0.013 4.013 14 C -0.168 4.168 15 C -0.092 4.092 16 C -0.147 4.147 17 C 0.026 3.974 18 N -0.394 5.394 19 C -0.375 4.375 20 H 0.096 0.904 21 C -0.273 4.273 22 N -0.624 5.624 23 Si 0.804 3.196 24 H -0.187 1.187 25 H -0.220 1.220 26 H -0.221 1.221 27 C -0.159 4.159 28 C -0.009 4.009 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.137 0.863 39 H 0.126 0.874 40 H 0.105 0.895 41 H 0.126 0.874 42 H 0.076 0.924 43 H 0.102 0.898 44 H 0.099 0.901 45 H 0.069 0.931 46 H 0.073 0.927 47 H 0.037 0.963 48 H 0.047 0.953 49 H 0.203 0.797 50 H 0.060 0.940 51 H 0.071 0.929 52 H 0.098 0.902 53 H 0.092 0.908 54 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 13.817 23.565 -11.779 29.748 hybrid contribution -0.516 -1.242 0.438 1.414 sum 13.301 22.323 -11.341 28.352 Atomic orbital electron populations 1.22030 0.93964 1.02370 1.02364 1.21772 0.96635 0.99054 0.93344 0.90698 1.22452 0.96885 0.99037 0.97176 1.22571 0.98205 1.00067 0.95591 1.22391 0.99181 0.97409 0.96140 1.21516 0.95074 0.96647 0.95642 0.92137 1.22073 0.99986 1.02359 0.92455 1.21409 0.85912 0.77544 0.85559 1.90651 1.17359 1.59838 1.78593 1.48309 1.07821 1.57931 1.20499 1.22053 0.78202 0.96993 1.04099 1.22086 1.01792 0.96129 0.96811 1.21003 0.94612 0.95214 0.98420 1.21634 0.94397 0.97520 1.01134 1.20889 0.92744 0.86108 0.97677 1.42694 1.03825 1.04331 1.88573 1.19712 0.84688 0.92747 1.40323 0.90394 1.25638 1.02398 0.95480 1.03798 1.69835 1.35091 0.98215 1.59226 0.85038 0.79971 0.77909 0.76653 1.18735 1.22016 1.22104 1.21874 0.95173 0.96331 1.02513 1.21532 0.99564 0.93349 0.86484 0.91990 0.91539 0.92235 0.91246 0.90976 0.91468 0.91651 0.93551 0.92744 0.86345 0.87355 0.89527 0.87359 0.92389 0.89836 0.90055 0.93120 0.92741 0.96330 0.95314 0.79738 0.94041 0.92897 0.90162 0.90777 0.90236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 7.87 71.98 0.57 -0.72 16 2 C -0.09 -1.03 3.50 -10.07 -0.04 -1.07 16 3 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 4 C -0.12 -1.38 6.35 31.67 0.20 -1.18 16 5 C -0.13 -1.85 6.94 32.01 0.22 -1.62 16 6 C -0.11 -2.11 5.44 31.79 0.17 -1.94 16 7 C -0.07 -1.11 2.55 -10.07 -0.03 -1.13 16 8 H 0.06 1.18 7.92 -2.39 -0.02 1.16 16 9 C -0.13 -1.82 2.22 29.85 0.07 -1.76 16 10 C 0.51 10.82 7.48 87.66 0.66 11.48 16 11 O -0.58 -17.11 14.24 -3.03 -0.04 -17.15 16 12 N -0.61 -11.64 2.97 -818.15 -2.43 -14.07 16 13 C 0.11 1.54 6.37 86.51 0.55 2.09 16 14 C -0.13 -2.51 5.16 30.82 0.16 -2.35 16 15 C -0.07 -1.64 2.15 -10.77 -0.02 -1.66 16 16 C -0.11 -3.35 4.80 30.59 0.15 -3.20 16 17 C 0.15 5.83 6.01 86.38 0.52 6.35 16 18 N -0.75 -38.62 5.60 -343.47 -1.92 -40.55 16 19 C -0.24 -13.62 9.99 84.03 0.84 -12.78 16 20 H 0.08 4.16 7.83 -2.91 -0.02 4.13 16 21 C -0.08 -4.71 5.50 84.86 0.47 -4.24 16 22 N -0.97 -60.28 13.06 21.65 0.28 -60.00 16 23 Si 0.98 46.07 29.55 68.60 2.03 48.10 16 24 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 25 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 26 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 27 C -0.12 -2.55 5.36 30.66 0.16 -2.39 16 28 C 0.11 2.28 6.43 86.35 0.55 2.84 16 29 H 0.06 0.52 6.79 -2.39 -0.02 0.51 16 30 H 0.07 0.46 6.71 -2.39 -0.02 0.45 16 31 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.07 0.79 7.85 -2.39 -0.02 0.77 16 33 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.05 1.09 7.66 -2.38 -0.02 1.07 16 37 H 0.05 1.06 7.76 -2.38 -0.02 1.04 16 38 H 0.12 1.12 6.25 -2.38 -0.01 1.11 16 39 H 0.11 1.29 6.44 -2.39 -0.02 1.27 16 40 H 0.09 1.02 8.14 -2.39 -0.02 1.01 16 41 H 0.11 1.03 5.93 -2.39 -0.01 1.02 16 42 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.08 1.66 6.50 -2.39 -0.02 1.64 16 44 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 45 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 46 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 47 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 48 H 0.03 1.07 6.53 -2.39 -0.02 1.05 16 49 H 0.37 20.46 7.67 -92.71 -0.71 19.75 16 50 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 51 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 52 H 0.08 1.61 8.14 -2.39 -0.02 1.60 16 53 H 0.07 1.75 7.01 -2.39 -0.02 1.73 16 54 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 Total: -1.00 -70.43 402.00 3.26 -67.16 By element: Atomic # 1 Polarization: 29.64 SS G_CDS: 0.15 Total: 29.78 kcal Atomic # 6 Polarization: -18.49 SS G_CDS: 5.20 Total: -13.28 kcal Atomic # 7 Polarization: -110.54 SS G_CDS: -4.07 Total: -114.61 kcal Atomic # 8 Polarization: -17.11 SS G_CDS: -0.04 Total: -17.15 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -70.43 3.26 -67.16 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753569575.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.244 kcal (2) G-P(sol) polarization free energy of solvation -70.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds