Wall clock time and date at job start Tue Mar 31 2020 15:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 110.01923 * 2 1 4 4 C 1.53878 * 110.07311 * 121.41729 * 2 1 3 5 5 C 1.54265 * 106.60020 * 119.30284 * 4 2 1 6 6 C 1.54892 * 104.19321 * 23.61262 * 5 4 2 7 7 C 1.54266 * 110.03182 * 238.60777 * 2 1 3 8 8 H 1.08997 * 110.48625 * 335.86942 * 7 2 1 9 9 C 1.53003 * 110.48477 * 98.38207 * 7 2 1 10 10 C 1.50691 * 109.46882 * 184.99886 * 9 7 2 11 11 O 1.21283 * 120.00382 * 359.97438 * 10 9 7 12 12 N 1.34779 * 120.00268 * 180.02562 * 10 9 7 13 13 C 1.46995 * 120.60954 * 0.02562 * 12 10 9 14 14 C 1.53196 * 108.73708 * 126.39083 * 13 12 10 15 15 C 1.53039 * 109.33748 * 54.62190 * 14 13 12 16 16 C 1.53002 * 109.45721 * 178.59861 * 15 14 13 17 17 C 1.53007 * 109.46761 * 185.00074 * 16 15 14 18 18 N 1.46498 * 109.46990 * 180.02562 * 17 16 15 19 19 C 1.36938 * 120.00398 * 180.02562 * 18 17 16 20 20 H 1.08008 * 119.99404 * 359.97438 * 19 18 17 21 21 C 1.38805 * 120.00591 * 180.02562 * 19 18 17 22 22 N 1.31624 * 119.99630 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00294 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46971 * 89.99986 * 23 21 19 25 25 H 1.48494 * 109.47155 * 209.99675 * 23 21 19 26 26 H 1.48497 * 109.47069 * 329.99969 * 23 21 19 27 27 C 1.53033 * 109.54130 * 298.61926 * 15 14 13 28 28 C 1.46925 * 120.63449 * 180.02562 * 12 10 9 29 29 H 1.08997 * 109.47434 * 181.39210 * 1 2 3 30 30 H 1.09001 * 109.47050 * 301.39174 * 1 2 3 31 31 H 1.08997 * 109.46754 * 61.38999 * 1 2 3 32 32 H 1.08991 * 110.03438 * 238.59198 * 4 2 1 33 33 H 1.09007 * 110.02911 * 359.97123 * 4 2 1 34 34 H 1.08995 * 110.48486 * 142.28867 * 5 4 2 35 35 H 1.08995 * 110.48764 * 264.93803 * 5 4 2 36 36 H 1.08994 * 110.75523 * 203.73774 * 6 5 4 37 37 H 1.09004 * 110.75624 * 80.37321 * 6 5 4 38 38 H 1.09001 * 109.47089 * 64.99762 * 9 7 2 39 39 H 1.08998 * 109.46699 * 305.00202 * 9 7 2 40 40 H 1.09001 * 109.63157 * 6.60495 * 13 12 10 41 41 H 1.08996 * 109.58534 * 246.14994 * 13 12 10 42 42 H 1.09002 * 109.49815 * 294.65503 * 14 13 12 43 43 H 1.09000 * 109.49595 * 174.58900 * 14 13 12 44 44 H 1.09007 * 109.45874 * 58.62520 * 15 14 13 45 45 H 1.08995 * 109.47215 * 304.99925 * 16 15 14 46 46 H 1.08999 * 109.47162 * 65.00175 * 16 15 14 47 47 H 1.08995 * 109.47134 * 299.99900 * 17 16 15 48 48 H 1.08999 * 109.47200 * 60.00124 * 17 16 15 49 49 H 0.96998 * 120.00255 * 359.97438 * 18 17 16 50 50 H 0.97001 * 119.99480 * 180.02562 * 22 21 19 51 51 H 1.08997 * 109.50670 * 181.31633 * 27 15 14 52 52 H 1.08998 * 109.50149 * 301.38469 * 27 15 14 53 53 H 1.09004 * 109.58683 * 113.84331 * 28 12 10 54 54 H 1.08993 * 109.58510 * 353.41407 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0241 0.0000 4 6 2.0581 -0.7534 1.2334 5 6 2.8890 -1.9399 0.7027 6 6 3.3144 -1.4995 -0.7200 7 6 2.0584 -0.7549 -1.2372 8 1 1.3137 -1.4642 -1.5981 9 6 2.4381 0.2307 -2.3441 10 6 2.8340 -0.5322 -3.5819 11 8 2.8149 -1.7449 -3.5789 12 7 3.2104 0.1330 -4.6920 13 6 3.2402 1.6025 -4.7101 14 6 4.6282 2.0610 -5.1683 15 6 4.9592 1.4086 -6.5125 16 6 6.3303 1.8919 -6.9897 17 6 6.6072 1.3388 -8.3892 18 7 7.9202 1.8011 -8.8459 19 6 8.3856 1.4306 -10.0793 20 1 7.7848 0.7973 -10.7153 21 6 9.6299 1.8681 -10.5118 22 7 10.3623 2.6395 -9.7365 23 14 10.2650 1.3622 -12.1941 24 1 9.8380 2.3620 -13.2057 25 1 11.7480 1.2921 -12.1628 26 1 9.7140 0.0303 -12.5512 27 6 4.9829 -0.1130 -6.3510 28 6 3.5986 -0.5969 -5.9066 29 1 -0.3634 -1.0273 0.0250 30 1 -0.3633 0.5353 0.8772 31 1 -0.3633 0.4921 -0.9022 32 1 2.6875 -0.0949 1.8320 33 1 1.2244 -1.1190 1.8329 34 1 3.7656 -2.1025 1.3298 35 1 2.2792 -2.8422 0.6564 36 1 3.5336 -2.3663 -1.3433 37 1 4.1713 -0.8273 -0.6763 38 1 3.2754 0.8447 -2.0124 39 1 1.5850 0.8707 -2.5690 40 1 3.0410 1.9852 -3.7091 41 1 2.4854 1.9747 -5.4027 42 1 5.3717 1.7659 -4.4278 43 1 4.6351 3.1454 -5.2787 44 1 4.2015 1.6840 -7.2462 45 1 6.3408 2.9813 -7.0209 46 1 7.0991 1.5406 -6.3015 47 1 6.5966 0.2494 -8.3580 48 1 5.8384 1.6901 -9.0774 49 1 8.4597 2.3701 -8.2749 50 1 11.2317 2.9455 -10.0390 51 1 5.2416 -0.5761 -7.3032 52 1 5.7233 -0.3877 -5.5998 53 1 2.8729 -0.4037 -6.6967 54 1 3.6356 -1.6654 -5.6947 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753569577.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:53 Heat of formation + Delta-G solvation = -84.197659 kcal Electronic energy + Delta-G solvation = -27637.409203 eV Core-core repulsion = 23992.622625 eV Total energy + Delta-G solvation = -3644.786578 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.38137 -39.67114 -38.61895 -36.87233 -35.04179 -33.18825 -32.74596 -32.04770 -31.67899 -29.92927 -27.38834 -26.46511 -25.43148 -24.65250 -23.86147 -22.59188 -21.67332 -21.13876 -20.35918 -19.82155 -19.14080 -17.94848 -17.08868 -16.69973 -16.56599 -16.07693 -15.89946 -15.64392 -15.49539 -15.33210 -15.06594 -14.78653 -14.61683 -14.39770 -14.20203 -14.02633 -13.86312 -13.61988 -13.21530 -13.08861 -13.03276 -12.85057 -12.74193 -12.50607 -12.25256 -12.18770 -12.13469 -11.97518 -11.87057 -11.75755 -11.62690 -11.59177 -11.47285 -11.41002 -11.28366 -11.22967 -11.19134 -10.91917 -10.61479 -9.60065 -9.00713 -7.97089 -5.26104 1.45796 1.47910 1.56448 1.68826 2.06880 2.54693 3.36285 3.48492 3.67279 3.71099 3.77652 3.80520 3.84067 3.95909 4.15742 4.23414 4.33173 4.34883 4.36857 4.43886 4.45644 4.51947 4.55489 4.57444 4.66031 4.69830 4.73397 4.76728 4.78244 4.82511 4.87839 4.89857 4.96419 5.00817 5.05980 5.07304 5.11832 5.13389 5.18576 5.22060 5.30586 5.31156 5.36880 5.38480 5.41786 5.47846 5.53252 5.56764 5.62631 5.64375 6.25998 6.48573 7.23941 7.31417 8.08781 8.31323 9.26590 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.029120 B = 0.001899 C = 0.001889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.322498 B =14741.771911 C =14815.569986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.089 4.089 3 H 0.087 0.913 4 C -0.119 4.119 5 C -0.126 4.126 6 C -0.120 4.120 7 C -0.070 4.070 8 H 0.061 0.939 9 C -0.127 4.127 10 C 0.506 3.494 11 O -0.586 6.586 12 N -0.613 5.613 13 C 0.107 3.893 14 C -0.126 4.126 15 C -0.074 4.074 16 C -0.107 4.107 17 C 0.149 3.851 18 N -0.750 5.750 19 C -0.248 4.248 20 H 0.074 0.926 21 C -0.078 4.078 22 N -0.970 5.970 23 Si 0.976 3.024 24 H -0.285 1.285 25 H -0.294 1.294 26 H -0.270 1.270 27 C -0.125 4.125 28 C 0.115 3.885 29 H 0.046 0.954 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.057 0.943 36 H 0.045 0.955 37 H 0.064 0.936 38 H 0.112 0.888 39 H 0.118 0.882 40 H 0.113 0.887 41 H 0.086 0.914 42 H 0.060 0.940 43 H 0.094 0.906 44 H 0.081 0.919 45 H 0.063 0.937 46 H 0.049 0.951 47 H 0.019 0.981 48 H 0.019 0.981 49 H 0.373 0.627 50 H 0.252 0.748 51 H 0.070 0.930 52 H 0.050 0.950 53 H 0.078 0.922 54 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.108 -1.515 22.728 32.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.107 4.107 3 H 0.106 0.894 4 C -0.156 4.156 5 C -0.163 4.163 6 C -0.158 4.158 7 C -0.089 4.089 8 H 0.080 0.920 9 C -0.166 4.166 10 C 0.297 3.703 11 O -0.466 6.466 12 N -0.346 5.346 13 C -0.015 4.015 14 C -0.164 4.164 15 C -0.093 4.093 16 C -0.145 4.145 17 C 0.023 3.977 18 N -0.392 5.392 19 C -0.380 4.380 20 H 0.092 0.908 21 C -0.270 4.270 22 N -0.621 5.621 23 Si 0.804 3.196 24 H -0.211 1.211 25 H -0.221 1.221 26 H -0.195 1.195 27 C -0.163 4.163 28 C -0.008 4.008 29 H 0.065 0.935 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.064 0.936 37 H 0.083 0.917 38 H 0.130 0.870 39 H 0.136 0.864 40 H 0.131 0.869 41 H 0.105 0.895 42 H 0.078 0.922 43 H 0.112 0.888 44 H 0.099 0.901 45 H 0.082 0.918 46 H 0.068 0.932 47 H 0.036 0.964 48 H 0.037 0.963 49 H 0.204 0.796 50 H 0.060 0.940 51 H 0.088 0.912 52 H 0.069 0.931 53 H 0.097 0.903 54 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -23.154 -2.242 22.570 32.412 hybrid contribution 1.217 -0.344 -1.108 1.681 sum -21.937 -2.586 21.462 30.799 Atomic orbital electron populations 1.21882 0.94504 1.01530 1.02215 1.21799 0.96022 0.99744 0.93166 0.89441 1.22224 0.99464 0.96665 0.97277 1.22347 0.99729 0.98380 0.95879 1.22519 0.97476 0.99672 0.96087 1.21786 0.97150 0.96076 0.93848 0.92003 1.21840 1.04472 0.98963 0.91333 1.21378 0.75903 0.87870 0.85187 1.90662 1.55540 1.16134 1.84305 1.48338 1.65890 1.08198 1.12159 1.22021 0.97441 0.77567 1.04455 1.21956 0.96991 1.01559 0.95899 1.21016 0.96104 0.94222 0.97951 1.21630 0.97333 1.00493 0.95057 1.20899 0.86201 0.96259 0.94318 1.42646 1.18195 1.60546 1.17844 1.19657 0.99957 1.24253 0.94094 0.90777 1.25617 0.97780 1.01155 1.02498 1.69822 1.12790 1.40837 1.38616 0.85108 0.76882 0.78112 0.79477 1.21145 1.22052 1.19530 1.21944 0.96459 0.96546 1.01354 1.21504 0.95736 0.96857 0.86668 0.93489 0.91758 0.92270 0.91073 0.91346 0.91495 0.92450 0.93645 0.91712 0.87011 0.86443 0.86894 0.89540 0.92162 0.88778 0.90085 0.91798 0.93174 0.96352 0.96315 0.79553 0.93951 0.91177 0.93130 0.90340 0.91174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 8.84 71.98 0.64 -0.72 16 2 C -0.09 -0.94 3.07 -10.07 -0.03 -0.97 16 3 H 0.09 0.69 7.84 -2.39 -0.02 0.68 16 4 C -0.12 -1.33 6.46 31.32 0.20 -1.12 16 5 C -0.13 -1.85 6.83 31.67 0.22 -1.63 16 6 C -0.12 -2.17 5.75 31.89 0.18 -1.99 16 7 C -0.07 -1.06 1.98 -9.72 -0.02 -1.08 16 8 H 0.06 1.22 7.61 -2.39 -0.02 1.20 16 9 C -0.13 -1.64 3.40 29.85 0.10 -1.53 16 10 C 0.51 10.79 7.51 87.65 0.66 11.45 16 11 O -0.59 -17.63 14.14 -3.04 -0.04 -17.67 16 12 N -0.61 -11.62 2.97 -818.68 -2.43 -14.05 16 13 C 0.11 1.31 6.34 86.35 0.55 1.86 16 14 C -0.13 -2.03 5.36 30.67 0.16 -1.87 16 15 C -0.07 -1.65 2.15 -10.77 -0.02 -1.67 16 16 C -0.11 -3.29 4.80 30.60 0.15 -3.14 16 17 C 0.15 5.99 6.02 86.38 0.52 6.51 16 18 N -0.75 -39.24 5.60 -343.45 -1.92 -41.17 16 19 C -0.25 -14.22 9.99 84.03 0.84 -13.38 16 20 H 0.07 4.09 7.83 -2.91 -0.02 4.07 16 21 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 22 N -0.97 -60.29 13.06 21.65 0.28 -60.01 16 23 Si 0.98 46.80 29.55 68.60 2.03 48.83 16 24 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 25 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 26 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 27 C -0.12 -3.02 5.15 30.68 0.16 -2.86 16 28 C 0.12 2.54 6.44 86.37 0.56 3.10 16 29 H 0.05 0.52 8.14 -2.39 -0.02 0.51 16 30 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.07 0.70 7.67 -2.38 -0.02 0.68 16 34 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.04 1.10 7.29 -2.39 -0.02 1.08 16 37 H 0.06 1.11 7.97 -2.38 -0.02 1.09 16 38 H 0.11 1.07 7.57 -2.39 -0.02 1.05 16 39 H 0.12 0.92 7.95 -2.39 -0.02 0.91 16 40 H 0.11 0.76 5.94 -2.39 -0.01 0.75 16 41 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 45 H 0.06 1.94 8.14 -2.39 -0.02 1.93 16 46 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 47 H 0.02 0.75 6.53 -2.39 -0.02 0.74 16 48 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 49 H 0.37 20.64 7.67 -92.71 -0.71 19.93 16 50 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 51 H 0.07 1.86 6.50 -2.39 -0.02 1.84 16 52 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 53 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 54 H 0.07 1.84 7.00 -2.39 -0.02 1.83 16 Total: -1.00 -72.26 408.02 3.37 -68.89 By element: Atomic # 1 Polarization: 28.24 SS G_CDS: 0.13 Total: 28.37 kcal Atomic # 6 Polarization: -18.52 SS G_CDS: 5.32 Total: -13.20 kcal Atomic # 7 Polarization: -111.15 SS G_CDS: -4.08 Total: -115.23 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: -0.04 Total: -17.67 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 2.03 Total: 48.83 kcal Total: -72.26 3.37 -68.89 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753569577.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.303 kcal (2) G-P(sol) polarization free energy of solvation -72.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds