Wall clock time and date at job start Tue Mar 31 2020 15:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 110.05377 * 2 1 4 4 C 1.54268 * 110.03338 * 121.41177 * 2 1 3 5 5 C 1.54892 * 104.19396 * 142.89868 * 4 2 1 6 6 C 1.54893 * 102.75060 * 322.05973 * 5 4 2 7 7 C 1.53873 * 110.03636 * 238.58428 * 2 1 3 8 8 H 1.09002 * 110.03423 * 121.42836 * 7 2 1 9 9 C 1.53005 * 110.07153 * 0.02562 * 7 2 1 10 10 C 1.50698 * 109.46955 * 175.71685 * 9 7 2 11 11 O 1.21279 * 120.00016 * 0.02562 * 10 9 7 12 12 N 1.34776 * 119.99753 * 179.97438 * 10 9 7 13 13 C 1.46925 * 120.63185 * 359.72462 * 12 10 9 14 14 C 1.52760 * 109.00883 * 233.57912 * 13 12 10 15 15 C 1.53041 * 109.38425 * 305.58830 * 14 13 12 16 16 C 1.53004 * 109.45691 * 181.25638 * 15 14 13 17 17 C 1.52995 * 109.47122 * 64.93646 * 16 15 14 18 18 N 1.46503 * 109.47281 * 179.97438 * 17 16 15 19 19 C 1.36942 * 120.00033 * 179.97438 * 18 17 16 20 20 H 1.07995 * 119.99442 * 359.97438 * 19 18 17 21 21 C 1.38811 * 119.99614 * 179.97438 * 19 18 17 22 22 N 1.31616 * 119.99633 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 120.00411 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.47059 * 89.99960 * 23 21 19 25 25 H 1.48491 * 109.47106 * 210.00262 * 23 21 19 26 26 H 1.48503 * 109.46989 * 330.00197 * 23 21 19 27 27 C 1.53043 * 109.53652 * 61.23840 * 15 14 13 28 28 C 1.46930 * 120.63005 * 180.02562 * 12 10 9 29 29 H 1.09012 * 109.46757 * 181.41671 * 1 2 3 30 30 H 1.08997 * 109.47669 * 301.41480 * 1 2 3 31 31 H 1.08998 * 109.47057 * 61.42111 * 1 2 3 32 32 H 1.08995 * 110.48707 * 24.22292 * 4 2 1 33 33 H 1.08996 * 110.48891 * 261.57524 * 4 2 1 34 34 H 1.09000 * 110.75542 * 203.74768 * 5 4 2 35 35 H 1.08996 * 110.91409 * 80.44459 * 5 4 2 36 36 H 1.08997 * 110.48365 * 279.26674 * 6 5 4 37 37 H 1.08991 * 110.60286 * 156.67716 * 6 5 4 38 38 H 1.08994 * 109.47047 * 295.71540 * 9 7 2 39 39 H 1.09001 * 109.47072 * 55.71929 * 9 7 2 40 40 H 1.08996 * 109.58411 * 353.41701 * 13 12 10 41 41 H 1.09001 * 109.58968 * 113.84226 * 13 12 10 42 42 H 1.08995 * 109.56419 * 185.54829 * 14 13 12 43 43 H 1.09004 * 109.38103 * 65.51563 * 14 13 12 44 44 H 1.08993 * 109.44733 * 301.22317 * 15 14 13 45 45 H 1.09002 * 109.46880 * 184.93369 * 16 15 14 46 46 H 1.08996 * 109.47223 * 304.93003 * 16 15 14 47 47 H 1.09002 * 109.47016 * 299.99640 * 17 16 15 48 48 H 1.08996 * 109.47596 * 59.99586 * 17 16 15 49 49 H 0.96997 * 119.99807 * 359.97438 * 18 17 16 50 50 H 0.97000 * 120.00101 * 179.97438 * 22 21 19 51 51 H 1.09000 * 109.49497 * 178.68299 * 27 15 14 52 52 H 1.09008 * 109.49808 * 58.58670 * 27 15 14 53 53 H 1.09004 * 109.58320 * 246.15966 * 28 12 10 54 54 H 1.08999 * 109.58451 * 6.58206 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9037 1.0239 0.0000 4 6 2.0584 -0.7554 1.2369 5 6 3.3137 -1.5006 0.7192 6 6 2.8876 -1.9406 -0.7035 7 6 2.0572 -0.7535 -1.2337 8 1 2.6868 -0.0953 -1.8324 9 6 0.8869 -1.2668 -2.0752 10 6 1.4156 -1.9097 -3.3315 11 8 2.6106 -1.9536 -3.5335 12 7 0.5604 -2.4369 -4.2299 13 6 -0.8896 -2.3977 -3.9956 14 6 -1.4516 -3.8129 -4.1174 15 6 -1.0489 -4.4049 -5.4700 16 6 -1.6373 -5.8106 -5.6067 17 6 -3.1644 -5.7232 -5.6400 18 7 -3.7278 -7.0691 -5.7715 19 6 -5.0855 -7.2411 -5.8221 20 1 -5.7407 -6.3846 -5.7647 21 6 -5.6192 -8.5164 -5.9473 22 7 -6.9241 -8.6818 -5.9954 23 14 -4.4857 -9.9978 -6.0473 24 1 -4.2214 -10.5121 -4.6795 25 1 -5.1305 -11.0605 -6.8597 26 1 -3.2040 -9.5984 -6.6822 27 6 0.4770 -4.4797 -5.5619 28 6 1.0606 -3.0675 -5.4590 29 1 -0.3633 -1.0275 0.0254 30 1 -0.3634 0.5356 0.8770 31 1 -0.3633 0.4916 -0.9024 32 1 1.3143 -1.4659 1.5967 33 1 2.3297 -0.0535 2.0255 34 1 3.5326 -2.3677 1.3423 35 1 4.1730 -0.8314 0.6754 36 1 2.2773 -2.8425 -0.6570 37 1 3.7625 -2.1051 -1.3322 38 1 0.3214 -2.0010 -1.5016 39 1 0.2365 -0.4330 -2.3398 40 1 -1.0878 -2.0120 -2.9957 41 1 -1.3625 -1.7547 -4.7380 42 1 -2.5386 -3.7816 -4.0431 43 1 -1.0499 -4.4320 -3.3151 44 1 -1.4304 -3.7720 -6.2711 45 1 -1.2792 -6.2661 -6.5299 46 1 -1.3265 -6.4187 -4.7572 47 1 -3.5224 -5.2677 -4.7167 48 1 -3.4751 -5.1150 -6.4894 49 1 -3.1392 -7.8384 -5.8226 50 1 -7.2971 -9.5729 -6.0833 51 1 0.7626 -4.9229 -6.5159 52 1 0.8611 -5.0922 -4.7461 53 1 0.7503 -2.4803 -6.3233 54 1 2.1486 -3.1236 -5.4242 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753569579.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:12:57 Heat of formation + Delta-G solvation = -75.298592 kcal Electronic energy + Delta-G solvation = -27994.910486 eV Core-core repulsion = 24350.509801 eV Total energy + Delta-G solvation = -3644.400686 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.46549 -39.79038 -38.65043 -36.98718 -35.04194 -33.48261 -32.89693 -32.13805 -31.47258 -30.19992 -27.40651 -26.18524 -25.71395 -24.27448 -24.14334 -22.59764 -21.73455 -21.41439 -20.12624 -19.60471 -19.25004 -18.26053 -17.24439 -16.63339 -16.53919 -16.30259 -15.89957 -15.84398 -15.54407 -15.10472 -15.02828 -14.87364 -14.57746 -14.46805 -14.33265 -14.23728 -13.84209 -13.37087 -13.35264 -13.28681 -13.08830 -12.92383 -12.80083 -12.54592 -12.31940 -12.15741 -12.06646 -11.85809 -11.83209 -11.70073 -11.65288 -11.57137 -11.50209 -11.40740 -11.34509 -11.20997 -11.11913 -10.91464 -10.63715 -9.60361 -9.28148 -8.03347 -5.36529 1.37346 1.40613 1.48174 1.68072 2.07140 2.47940 3.28131 3.49553 3.54297 3.67471 3.72918 3.80289 3.81128 3.96231 4.05212 4.17408 4.31441 4.34105 4.35977 4.43069 4.44036 4.49704 4.54875 4.57453 4.63077 4.67345 4.74270 4.76605 4.77486 4.86115 4.88170 4.91017 4.94062 4.99472 5.05015 5.07415 5.09744 5.11789 5.17227 5.21906 5.27654 5.30004 5.39532 5.42492 5.43947 5.51751 5.55212 5.61550 5.63868 5.75979 6.21316 6.46799 7.08007 7.23144 7.85542 8.03450 9.18156 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.018153 B = 0.002251 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.056619 B =12438.485933 C =12935.906590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.090 4.090 3 H 0.074 0.926 4 C -0.118 4.118 5 C -0.127 4.127 6 C -0.113 4.113 7 C -0.070 4.070 8 H 0.060 0.940 9 C -0.130 4.130 10 C 0.506 3.494 11 O -0.583 6.583 12 N -0.612 5.612 13 C 0.108 3.892 14 C -0.132 4.132 15 C -0.075 4.075 16 C -0.113 4.113 17 C 0.153 3.847 18 N -0.764 5.764 19 C -0.235 4.235 20 H 0.057 0.943 21 C -0.067 4.067 22 N -0.984 5.984 23 Si 0.957 3.043 24 H -0.278 1.278 25 H -0.295 1.295 26 H -0.252 1.252 27 C -0.120 4.120 28 C 0.112 3.888 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.054 0.946 37 H 0.047 0.953 38 H 0.109 0.891 39 H 0.117 0.883 40 H 0.107 0.893 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.060 0.940 44 H 0.080 0.920 45 H 0.062 0.938 46 H 0.059 0.941 47 H 0.032 0.968 48 H 0.021 0.979 49 H 0.365 0.635 50 H 0.258 0.742 51 H 0.082 0.918 52 H 0.055 0.945 53 H 0.078 0.922 54 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.780 20.209 11.594 31.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.108 4.108 3 H 0.093 0.907 4 C -0.155 4.155 5 C -0.164 4.164 6 C -0.150 4.150 7 C -0.089 4.089 8 H 0.078 0.922 9 C -0.169 4.169 10 C 0.296 3.704 11 O -0.464 6.464 12 N -0.345 5.345 13 C -0.014 4.014 14 C -0.170 4.170 15 C -0.094 4.094 16 C -0.151 4.151 17 C 0.027 3.973 18 N -0.409 5.409 19 C -0.366 4.366 20 H 0.075 0.925 21 C -0.259 4.259 22 N -0.635 5.635 23 Si 0.784 3.216 24 H -0.204 1.204 25 H -0.222 1.222 26 H -0.177 1.177 27 C -0.158 4.158 28 C -0.011 4.011 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.065 0.935 38 H 0.127 0.873 39 H 0.135 0.865 40 H 0.125 0.875 41 H 0.102 0.898 42 H 0.101 0.899 43 H 0.079 0.921 44 H 0.098 0.902 45 H 0.081 0.919 46 H 0.078 0.922 47 H 0.050 0.950 48 H 0.039 0.961 49 H 0.197 0.803 50 H 0.067 0.933 51 H 0.101 0.899 52 H 0.074 0.926 53 H 0.096 0.904 54 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 21.186 20.285 11.478 31.497 hybrid contribution 0.137 -1.408 -0.412 1.473 sum 21.322 18.877 11.065 30.552 Atomic orbital electron populations 1.22033 0.94007 1.02350 1.02350 1.21774 0.96595 0.99062 0.93403 0.90731 1.22452 0.96896 0.99017 0.97158 1.22512 0.98191 1.00084 0.95662 1.22323 0.99214 0.97385 0.96106 1.21520 0.95082 0.96666 0.95619 0.92168 1.22065 0.99957 1.02215 0.92662 1.21382 0.85924 0.77702 0.85366 1.90652 1.17275 1.60081 1.78364 1.48301 1.07706 1.57521 1.20978 1.21858 0.78279 0.97268 1.04021 1.21952 1.01755 0.96198 0.97113 1.21007 0.94695 0.95365 0.98369 1.21698 0.93773 0.97773 1.01867 1.20887 0.92829 0.85390 0.98173 1.42825 1.02874 1.04957 1.90265 1.19070 0.83332 0.93399 1.40797 0.92450 1.25550 0.97091 1.00521 1.02693 1.69885 1.11765 1.22448 1.59362 0.85380 0.79066 0.79188 0.77985 1.20389 1.22212 1.17706 1.21877 0.94966 0.96256 1.02735 1.21550 0.99550 0.93353 0.86606 0.91998 0.92285 0.91561 0.91219 0.90992 0.91501 0.91681 0.92722 0.93454 0.87326 0.86490 0.87501 0.89806 0.89908 0.92092 0.90164 0.91922 0.92206 0.95004 0.96058 0.80258 0.93332 0.89903 0.92600 0.90397 0.90737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 7.88 71.98 0.57 -0.71 16 2 C -0.09 -1.01 3.50 -10.07 -0.04 -1.05 16 3 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 4 C -0.12 -1.34 6.36 31.67 0.20 -1.13 16 5 C -0.13 -1.78 6.91 31.89 0.22 -1.56 16 6 C -0.11 -2.02 5.39 31.67 0.17 -1.85 16 7 C -0.07 -1.08 2.55 -10.07 -0.03 -1.10 16 8 H 0.06 1.14 7.95 -2.39 -0.02 1.12 16 9 C -0.13 -1.76 2.23 29.85 0.07 -1.69 16 10 C 0.51 10.40 7.48 87.66 0.66 11.05 16 11 O -0.58 -16.52 14.19 -3.03 -0.04 -16.56 16 12 N -0.61 -11.00 2.98 -819.83 -2.44 -13.44 16 13 C 0.11 1.46 6.31 86.22 0.54 2.00 16 14 C -0.13 -2.35 5.13 30.53 0.16 -2.19 16 15 C -0.08 -1.51 2.15 -10.76 -0.02 -1.53 16 16 C -0.11 -3.03 4.80 30.59 0.15 -2.88 16 17 C 0.15 5.48 6.02 86.38 0.52 6.00 16 18 N -0.76 -35.58 5.41 -343.46 -1.86 -37.44 16 19 C -0.23 -13.47 10.47 84.03 0.88 -12.59 16 20 H 0.06 3.58 8.06 -2.91 -0.02 3.56 16 21 C -0.07 -3.98 5.50 84.86 0.47 -3.52 16 22 N -0.98 -63.25 13.97 21.65 0.30 -62.95 16 23 Si 0.96 45.58 27.73 68.60 1.90 47.48 16 24 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 25 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 26 H -0.25 -10.85 6.52 99.48 0.65 -10.20 16 27 C -0.12 -2.24 5.36 30.66 0.16 -2.08 16 28 C 0.11 2.09 6.43 86.35 0.56 2.65 16 29 H 0.06 0.51 6.84 -2.38 -0.02 0.50 16 30 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.07 0.46 6.63 -2.39 -0.02 0.45 16 32 H 0.07 0.77 7.84 -2.39 -0.02 0.75 16 33 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.05 1.02 7.77 -2.39 -0.02 1.00 16 37 H 0.05 1.08 7.62 -2.39 -0.02 1.06 16 38 H 0.11 1.22 6.42 -2.39 -0.02 1.21 16 39 H 0.12 1.09 6.29 -2.39 -0.02 1.07 16 40 H 0.11 0.98 5.93 -2.39 -0.01 0.97 16 41 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.08 1.56 6.50 -2.39 -0.02 1.55 16 43 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 44 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 46 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 47 H 0.03 1.13 6.53 -2.39 -0.02 1.12 16 48 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 49 H 0.36 16.23 5.53 -92.71 -0.51 15.72 16 50 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 51 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 52 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 53 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 54 H 0.07 1.65 7.00 -2.39 -0.02 1.63 16 Total: -1.00 -72.53 398.70 3.38 -69.15 By element: Atomic # 1 Polarization: 25.64 SS G_CDS: 0.28 Total: 25.93 kcal Atomic # 6 Polarization: -17.41 SS G_CDS: 5.23 Total: -12.18 kcal Atomic # 7 Polarization: -109.83 SS G_CDS: -4.00 Total: -113.82 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: -0.04 Total: -16.56 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 1.90 Total: 47.48 kcal Total: -72.53 3.38 -69.15 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753569579.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.149 kcal (2) G-P(sol) polarization free energy of solvation -72.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds