Wall clock time and date at job start Tue Mar 31 2020 15:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 110.05244 * 2 1 4 4 C 1.53869 * 110.03059 * 238.58605 * 2 1 3 5 5 C 1.54266 * 106.60080 * 240.71479 * 4 2 1 6 6 C 1.54899 * 104.19319 * 336.39001 * 5 4 2 7 7 C 1.54266 * 110.03131 * 121.41891 * 2 1 3 8 8 H 1.08995 * 110.48742 * 24.21272 * 7 2 1 9 9 C 1.53005 * 110.48331 * 261.57243 * 7 2 1 10 10 C 1.50701 * 109.46602 * 175.00059 * 9 7 2 11 11 O 1.21283 * 120.00207 * 0.02562 * 10 9 7 12 12 N 1.34777 * 120.00134 * 179.97438 * 10 9 7 13 13 C 1.46933 * 120.62520 * 359.72241 * 12 10 9 14 14 C 1.52758 * 109.00809 * 233.58123 * 13 12 10 15 15 C 1.53048 * 109.38196 * 305.59165 * 14 13 12 16 16 C 1.52998 * 109.45963 * 181.25955 * 15 14 13 17 17 C 1.53005 * 109.46992 * 64.92921 * 16 15 14 18 18 N 1.46503 * 109.46886 * 179.97438 * 17 16 15 19 19 C 1.36938 * 119.99848 * 179.97438 * 18 17 16 20 20 H 1.08001 * 119.99983 * 0.02562 * 19 18 17 21 21 C 1.38809 * 120.00060 * 180.02562 * 19 18 17 22 22 N 1.31622 * 119.99896 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 120.00095 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46723 * 89.99952 * 23 21 19 25 25 H 1.48499 * 109.47096 * 209.99695 * 23 21 19 26 26 H 1.48498 * 109.46832 * 329.99845 * 23 21 19 27 27 C 1.53044 * 109.53985 * 61.23878 * 15 14 13 28 28 C 1.46923 * 120.63261 * 179.97438 * 12 10 9 29 29 H 1.09001 * 109.47227 * 298.58535 * 1 2 3 30 30 H 1.09005 * 109.47435 * 58.58087 * 1 2 3 31 31 H 1.09002 * 109.47393 * 178.57759 * 1 2 3 32 32 H 1.08999 * 110.03445 * 0.02562 * 4 2 1 33 33 H 1.09009 * 110.03169 * 121.43243 * 4 2 1 34 34 H 1.08998 * 110.48811 * 217.71986 * 5 4 2 35 35 H 1.08993 * 110.60227 * 95.12013 * 5 4 2 36 36 H 1.08997 * 110.75810 * 279.62763 * 6 5 4 37 37 H 1.08996 * 110.91000 * 156.32706 * 6 5 4 38 38 H 1.08995 * 109.47325 * 294.99932 * 9 7 2 39 39 H 1.08993 * 109.46974 * 55.00545 * 9 7 2 40 40 H 1.08993 * 109.58532 * 353.41860 * 13 12 10 41 41 H 1.09002 * 109.58438 * 113.84423 * 13 12 10 42 42 H 1.08998 * 109.56348 * 185.55785 * 14 13 12 43 43 H 1.09000 * 109.36207 * 65.49627 * 14 13 12 44 44 H 1.08998 * 109.45824 * 301.21780 * 15 14 13 45 45 H 1.09000 * 109.47347 * 184.92871 * 16 15 14 46 46 H 1.09003 * 109.47461 * 304.93265 * 16 15 14 47 47 H 1.09001 * 109.47321 * 299.99677 * 17 16 15 48 48 H 1.08999 * 109.47122 * 60.00186 * 17 16 15 49 49 H 0.96997 * 120.00015 * 0.02562 * 18 17 16 50 50 H 0.97003 * 119.99531 * 179.97438 * 22 21 19 51 51 H 1.08991 * 109.49249 * 178.68263 * 27 15 14 52 52 H 1.08997 * 109.49319 * 58.58296 * 27 15 14 53 53 H 1.09001 * 109.58489 * 246.15299 * 28 12 10 54 54 H 1.08991 * 109.58921 * 6.44073 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9037 1.0239 0.0000 4 6 2.0570 -0.7535 -1.2337 5 6 2.8874 -1.9406 -0.7037 6 6 3.3137 -1.5007 0.7191 7 6 2.0584 -0.7555 1.2368 8 1 1.3142 -1.4660 1.5966 9 6 2.4392 0.2297 2.3438 10 6 2.8350 -0.5338 3.5813 11 8 2.8151 -1.7464 3.5781 12 7 3.2123 0.1309 4.6914 13 6 3.2484 1.5997 4.7084 14 6 4.6313 2.0581 5.1675 15 6 4.9626 1.4052 6.5115 16 6 6.3341 1.8875 6.9882 17 6 6.2767 3.3904 7.2696 18 7 7.5898 3.8521 7.7267 19 6 7.7806 5.1714 8.0403 20 1 6.9629 5.8713 7.9512 21 6 9.0248 5.6090 8.4729 22 7 10.0211 4.7558 8.5820 23 14 9.2849 7.4085 8.9014 24 1 8.9855 7.6230 10.3401 25 1 10.6956 7.7836 8.6282 26 1 8.3805 8.2494 8.0768 27 6 4.9853 -0.1165 6.3495 28 6 3.6004 -0.5994 5.9057 29 1 -0.3634 0.4917 0.9024 30 1 -0.3634 0.5357 -0.8770 31 1 -0.3634 -1.0273 -0.0255 32 1 1.2228 -1.1188 -1.8327 33 1 2.6867 -0.0952 -1.8325 34 1 3.7637 -2.1036 -1.3310 35 1 2.2791 -2.8438 -0.6574 36 1 4.1710 -0.8291 0.6751 37 1 3.5344 -2.3660 1.3440 38 1 3.2767 0.8432 2.0119 39 1 1.5865 0.8701 2.5693 40 1 3.0522 1.9816 3.7066 41 1 2.4938 1.9758 5.3993 42 1 4.6383 3.1424 5.2783 43 1 5.3743 1.7628 4.4267 44 1 4.2056 1.6810 7.2456 45 1 6.6090 1.3574 7.9000 46 1 7.0773 1.6908 6.2154 47 1 6.0018 3.9206 6.3578 48 1 5.5335 3.5872 8.0424 49 1 8.3242 3.2235 7.8064 50 1 10.8907 5.0618 8.8839 51 1 5.2443 -0.5797 7.3015 52 1 5.7249 -0.3912 5.5975 53 1 2.8752 -0.4059 6.6961 54 1 3.6341 -1.6681 5.6944 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753569581.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:13:01 Heat of formation + Delta-G solvation = -83.936834 kcal Electronic energy + Delta-G solvation = -27693.003431 eV Core-core repulsion = 24048.228163 eV Total energy + Delta-G solvation = -3644.775268 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.39171 -39.67858 -38.62731 -36.85048 -35.02683 -33.30946 -32.62667 -32.05061 -31.70377 -29.90744 -27.48568 -26.41638 -25.41378 -24.32877 -24.23041 -22.51176 -21.64503 -21.16903 -20.36723 -19.83186 -19.12068 -17.95014 -17.10978 -16.68067 -16.55559 -16.05185 -15.90668 -15.65964 -15.47397 -15.32811 -15.07828 -14.79175 -14.61274 -14.35983 -14.31779 -13.94874 -13.84252 -13.62030 -13.22088 -13.09615 -13.02256 -12.84163 -12.73946 -12.49837 -12.27613 -12.18838 -12.10542 -11.97446 -11.87311 -11.76394 -11.61793 -11.59364 -11.47534 -11.41562 -11.31544 -11.19790 -11.17895 -10.88070 -10.63938 -9.60458 -8.98899 -7.95179 -5.24287 1.47384 1.49613 1.58068 1.67845 2.06703 2.56374 3.38476 3.48118 3.66858 3.69837 3.77200 3.80766 3.82185 3.99068 4.15665 4.22123 4.32887 4.36018 4.36311 4.43367 4.44962 4.51659 4.56846 4.59700 4.64094 4.68250 4.72743 4.77193 4.80064 4.82602 4.86039 4.90824 4.96044 4.99621 5.05359 5.06830 5.10730 5.13021 5.20699 5.23295 5.29983 5.31141 5.36404 5.38113 5.42061 5.49793 5.52899 5.56361 5.63574 5.63796 6.27581 6.46873 7.22804 7.32894 8.10814 8.32477 9.28672 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.019603 B = 0.002047 C = 0.001966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.012972 B =13674.424861 C =14236.154156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.090 4.090 3 H 0.084 0.916 4 C -0.119 4.119 5 C -0.125 4.125 6 C -0.120 4.120 7 C -0.069 4.069 8 H 0.064 0.936 9 C -0.129 4.129 10 C 0.508 3.492 11 O -0.583 6.583 12 N -0.613 5.613 13 C 0.109 3.891 14 C -0.131 4.131 15 C -0.073 4.073 16 C -0.109 4.109 17 C 0.152 3.848 18 N -0.752 5.752 19 C -0.244 4.244 20 H 0.078 0.922 21 C -0.081 4.081 22 N -0.972 5.972 23 Si 0.976 3.024 24 H -0.287 1.287 25 H -0.296 1.296 26 H -0.267 1.267 27 C -0.121 4.121 28 C 0.113 3.887 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.048 0.952 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.047 0.953 38 H 0.109 0.891 39 H 0.115 0.885 40 H 0.108 0.892 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.057 0.943 44 H 0.081 0.919 45 H 0.054 0.946 46 H 0.050 0.950 47 H 0.029 0.971 48 H 0.019 0.981 49 H 0.371 0.629 50 H 0.251 0.749 51 H 0.080 0.920 52 H 0.053 0.947 53 H 0.079 0.921 54 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.771 -10.669 -17.837 30.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.109 4.109 3 H 0.103 0.897 4 C -0.156 4.156 5 C -0.162 4.162 6 C -0.157 4.157 7 C -0.088 4.088 8 H 0.082 0.918 9 C -0.168 4.168 10 C 0.299 3.701 11 O -0.464 6.464 12 N -0.345 5.345 13 C -0.013 4.013 14 C -0.169 4.169 15 C -0.092 4.092 16 C -0.147 4.147 17 C 0.026 3.974 18 N -0.394 5.394 19 C -0.376 4.376 20 H 0.096 0.904 21 C -0.273 4.273 22 N -0.623 5.623 23 Si 0.805 3.195 24 H -0.214 1.214 25 H -0.222 1.222 26 H -0.191 1.191 27 C -0.159 4.159 28 C -0.009 4.009 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.066 0.934 38 H 0.127 0.873 39 H 0.134 0.866 40 H 0.127 0.873 41 H 0.104 0.896 42 H 0.102 0.898 43 H 0.076 0.924 44 H 0.099 0.901 45 H 0.073 0.927 46 H 0.069 0.931 47 H 0.047 0.953 48 H 0.037 0.963 49 H 0.203 0.797 50 H 0.060 0.940 51 H 0.098 0.902 52 H 0.071 0.929 53 H 0.098 0.902 54 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -21.870 -11.114 -17.832 30.328 hybrid contribution 1.149 0.423 0.731 1.426 sum -20.721 -10.691 -17.101 28.915 Atomic orbital electron populations 1.21880 0.94455 1.01597 1.02164 1.21803 0.96079 0.99668 0.93313 0.89736 1.22222 0.99498 0.96690 0.97240 1.22340 0.99732 0.98339 0.95839 1.22518 0.97376 0.99705 0.96129 1.21779 0.97236 0.96018 0.93727 0.91781 1.21844 1.04337 0.99034 0.91623 1.21292 0.75910 0.87847 0.85084 1.90653 1.55561 1.15896 1.84256 1.48310 1.65891 1.07974 1.12364 1.21868 0.97356 0.77856 1.04247 1.21941 0.97078 1.01366 0.96499 1.21002 0.96140 0.94506 0.97597 1.21633 0.97703 0.94861 1.00470 1.20893 0.86622 0.93690 0.96228 1.42686 1.09435 1.07026 1.80263 1.19675 0.95608 0.86942 1.35389 0.90415 1.25643 0.96024 1.02260 1.03391 1.69832 1.02059 1.35250 1.55168 0.85100 0.76664 0.79819 0.77954 1.21397 1.22250 1.19127 1.21889 0.96577 0.95606 1.01843 1.21552 0.95850 0.96967 0.86564 0.92345 0.91833 0.93300 0.91265 0.91227 0.91511 0.92262 0.91914 0.93370 0.87335 0.86646 0.87346 0.89617 0.89774 0.92400 0.90073 0.92738 0.93103 0.95328 0.96343 0.79732 0.94047 0.90156 0.92863 0.90241 0.90712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 8.84 71.98 0.64 -0.82 16 2 C -0.09 -1.03 3.07 -10.07 -0.03 -1.06 16 3 H 0.08 0.80 7.84 -2.39 -0.02 0.78 16 4 C -0.12 -1.40 6.46 31.32 0.20 -1.20 16 5 C -0.12 -1.85 6.83 31.67 0.22 -1.64 16 6 C -0.12 -2.18 5.76 31.89 0.18 -2.00 16 7 C -0.07 -1.08 1.98 -9.72 -0.02 -1.10 16 8 H 0.06 1.26 7.61 -2.39 -0.02 1.24 16 9 C -0.13 -1.79 3.40 29.85 0.10 -1.69 16 10 C 0.51 10.81 7.51 87.66 0.66 11.47 16 11 O -0.58 -17.00 14.14 -3.04 -0.04 -17.04 16 12 N -0.61 -11.60 2.98 -819.66 -2.44 -14.04 16 13 C 0.11 1.55 6.31 86.22 0.54 2.09 16 14 C -0.13 -2.52 5.13 30.53 0.16 -2.36 16 15 C -0.07 -1.64 2.15 -10.76 -0.02 -1.66 16 16 C -0.11 -3.34 4.80 30.60 0.15 -3.20 16 17 C 0.15 5.83 6.02 86.38 0.52 6.35 16 18 N -0.75 -38.64 5.60 -343.44 -1.92 -40.57 16 19 C -0.24 -13.71 9.99 84.03 0.84 -12.88 16 20 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 21 C -0.08 -4.71 5.50 84.86 0.47 -4.25 16 22 N -0.97 -60.24 13.06 21.65 0.28 -59.96 16 23 Si 0.98 46.08 29.55 68.60 2.03 48.11 16 24 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 25 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 26 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 27 C -0.12 -2.55 5.36 30.69 0.16 -2.39 16 28 C 0.11 2.28 6.44 86.38 0.56 2.83 16 29 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 31 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.07 0.74 7.67 -2.39 -0.02 0.72 16 33 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 34 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.06 1.11 7.97 -2.39 -0.02 1.09 16 37 H 0.05 1.14 7.28 -2.39 -0.02 1.12 16 38 H 0.11 1.23 7.55 -2.39 -0.02 1.21 16 39 H 0.12 1.07 7.95 -2.39 -0.02 1.05 16 40 H 0.11 1.03 5.93 -2.39 -0.01 1.02 16 41 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.08 1.67 6.50 -2.39 -0.02 1.65 16 43 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 45 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 46 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 47 H 0.03 1.07 6.53 -2.39 -0.02 1.05 16 48 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 49 H 0.37 20.47 7.67 -92.71 -0.71 19.76 16 50 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 51 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 52 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 53 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 54 H 0.07 1.76 7.00 -2.39 -0.02 1.74 16 Total: -1.00 -70.28 407.98 3.36 -66.93 By element: Atomic # 1 Polarization: 29.93 SS G_CDS: 0.13 Total: 30.06 kcal Atomic # 6 Polarization: -18.81 SS G_CDS: 5.32 Total: -13.49 kcal Atomic # 7 Polarization: -110.48 SS G_CDS: -4.08 Total: -114.56 kcal Atomic # 8 Polarization: -17.00 SS G_CDS: -0.04 Total: -17.04 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Total: -70.28 3.36 -66.93 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753569581.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.011 kcal (2) G-P(sol) polarization free energy of solvation -70.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds