Wall clock time and date at job start Tue Mar 31 2020 15:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47357 * 2 1 4 4 C 1.53009 * 109.47160 * 239.99691 * 2 1 3 5 5 C 1.53001 * 109.47160 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.47239 * 59.99900 * 5 4 2 7 7 C 1.52996 * 109.47329 * 300.00255 * 6 5 4 8 8 H 1.09000 * 109.47499 * 179.97438 * 7 6 5 9 9 C 1.50703 * 109.47171 * 299.99899 * 7 6 5 10 10 O 1.21284 * 120.00043 * 109.27216 * 9 7 6 11 11 N 1.34777 * 119.99653 * 289.27220 * 9 7 6 12 12 C 1.46921 * 120.63332 * 4.10361 * 11 9 7 13 13 C 1.52758 * 109.00818 * 233.58419 * 12 11 9 14 14 C 1.53045 * 109.38419 * 305.58622 * 13 12 11 15 15 C 1.52997 * 109.46169 * 181.26216 * 14 13 12 16 16 C 1.52995 * 109.47206 * 64.92964 * 15 14 13 17 17 N 1.46503 * 109.46914 * 179.97438 * 16 15 14 18 18 C 1.36937 * 119.99757 * 179.97438 * 17 16 15 19 19 H 1.07994 * 120.00202 * 0.02562 * 18 17 16 20 20 C 1.38813 * 119.99550 * 179.97438 * 18 17 16 21 21 N 1.31625 * 119.99612 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 120.00333 * 0.02562 * 20 18 17 23 23 H 1.48506 * 109.47059 * 89.99949 * 22 20 18 24 24 H 1.48500 * 109.46847 * 209.99786 * 22 20 18 25 25 H 1.48496 * 109.47132 * 330.00028 * 22 20 18 26 26 C 1.53041 * 109.53845 * 61.23719 * 14 13 12 27 27 C 1.46929 * 120.62913 * 184.37829 * 11 9 7 28 28 C 1.53001 * 109.47168 * 59.99701 * 7 6 5 29 29 H 1.09003 * 109.46676 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47124 * 299.99938 * 1 2 3 31 31 H 1.09000 * 109.46923 * 60.00424 * 1 2 3 32 32 H 1.09001 * 109.46576 * 60.00304 * 4 2 1 33 33 H 1.08990 * 109.47139 * 300.00224 * 4 2 1 34 34 H 1.08993 * 109.47124 * 180.02562 * 5 4 2 35 35 H 1.09003 * 109.46676 * 300.00061 * 5 4 2 36 36 H 1.08999 * 109.46612 * 59.99953 * 6 5 4 37 37 H 1.09000 * 109.46951 * 179.97438 * 6 5 4 38 38 H 1.09007 * 109.58412 * 353.41186 * 12 11 9 39 39 H 1.08998 * 109.59024 * 113.83863 * 12 11 9 40 40 H 1.08996 * 109.56671 * 185.54934 * 13 12 11 41 41 H 1.08999 * 109.36286 * 65.49566 * 13 12 11 42 42 H 1.09006 * 109.44473 * 301.22881 * 14 13 12 43 43 H 1.09005 * 109.46726 * 184.93163 * 15 14 13 44 44 H 1.09007 * 109.46784 * 304.92759 * 15 14 13 45 45 H 1.08993 * 109.47299 * 300.00104 * 16 15 14 46 46 H 1.09000 * 109.47084 * 60.00170 * 16 15 14 47 47 H 0.97000 * 120.00132 * 0.02562 * 17 16 15 48 48 H 0.97005 * 119.99601 * 180.02562 * 21 20 18 49 49 H 1.08995 * 109.50026 * 178.68423 * 26 14 13 50 50 H 1.09006 * 109.49689 * 58.58579 * 26 14 13 51 51 H 1.08999 * 109.58747 * 246.15966 * 27 11 9 52 52 H 1.09001 * 109.58759 * 6.58537 * 27 11 9 53 53 H 1.08999 * 109.47357 * 59.99945 * 28 7 6 54 54 H 1.09005 * 109.47111 * 180.02562 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2493 5 6 3.5701 -0.7208 -1.2496 6 6 4.0806 -1.4416 -0.0003 7 6 3.5706 -0.7204 1.2489 8 1 3.9340 -1.2341 2.1389 9 6 4.0724 0.7007 1.2486 10 8 3.3012 1.6161 1.0531 11 7 5.3782 0.9543 1.4655 12 6 6.3398 -0.1465 1.6146 13 6 7.1099 0.0391 2.9208 14 6 7.7410 1.4332 2.9447 15 6 8.5389 1.6094 4.2382 16 6 9.7148 0.6307 4.2495 17 7 10.4791 0.8000 5.4879 18 6 11.5840 0.0256 5.7217 19 1 11.8922 -0.7095 4.9932 20 6 12.3084 0.1864 6.8949 21 7 13.3708 -0.5576 7.1194 22 14 11.7757 1.4585 8.1548 23 1 10.8303 0.8368 9.1166 24 1 12.9670 1.9603 8.8857 25 1 11.1062 2.5895 7.4636 26 6 6.6406 2.4945 2.8757 27 6 5.8661 2.3367 1.5634 28 6 2.0406 -0.7209 1.2492 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.6767 -0.2075 -2.1392 33 1 1.6767 -1.7489 -1.2492 34 1 3.9334 -1.2342 -2.1397 35 1 3.9329 0.3071 -1.2499 36 1 3.7176 -2.4694 -0.0001 37 1 5.1706 -1.4416 -0.0008 38 1 5.8065 -1.0969 1.6384 39 1 7.0380 -0.1377 0.7776 40 1 7.8926 -0.7159 2.9935 41 1 6.4247 -0.0644 3.7621 42 1 8.4072 1.5446 2.0890 43 1 8.9155 2.6307 4.2964 44 1 7.8928 1.4111 5.0934 45 1 9.3382 -0.3904 4.1912 46 1 10.3608 0.8291 3.3943 47 1 10.2020 1.4600 6.1424 48 1 13.8768 -0.4455 7.9394 49 1 7.0893 3.4870 2.9162 50 1 5.9597 2.3678 3.7174 51 1 6.5249 2.5521 0.7221 52 1 5.0204 3.0243 1.5533 53 1 1.6776 -1.7487 1.2495 54 1 1.6773 -0.2066 2.1390 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753573228.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:17 Heat of formation + Delta-G solvation = -74.002199 kcal Electronic energy + Delta-G solvation = -28465.262899 eV Core-core repulsion = 24820.918429 eV Total energy + Delta-G solvation = -3644.344470 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.87810 -39.65680 -38.10941 -36.99026 -35.17856 -33.85593 -33.09830 -32.29031 -31.58059 -30.16919 -27.28462 -26.79072 -24.96501 -24.28726 -23.73650 -22.73014 -22.20260 -21.43295 -20.95929 -19.66214 -19.54507 -17.83673 -16.79463 -16.68100 -16.57699 -16.16109 -15.88037 -15.75470 -15.35471 -15.06592 -15.01246 -14.94413 -14.66072 -14.48801 -14.42170 -14.09331 -13.79078 -13.40526 -13.36290 -13.18900 -13.01842 -12.94605 -12.91229 -12.58365 -12.53650 -12.34208 -12.30818 -12.13937 -12.06076 -11.83456 -11.81540 -11.69718 -11.58440 -11.27032 -11.19757 -10.96787 -10.92140 -10.89879 -10.22046 -9.57953 -9.27985 -8.03211 -5.36373 1.37375 1.40710 1.48268 1.67575 2.06046 2.48028 3.28170 3.48149 3.54253 3.75338 3.78006 3.80280 3.85915 4.02449 4.04667 4.16116 4.24811 4.27161 4.34075 4.37121 4.47001 4.49059 4.55358 4.57632 4.63172 4.66377 4.71230 4.76684 4.82876 4.84205 4.90869 4.93760 4.97299 4.99467 5.03899 5.07205 5.08991 5.10718 5.17307 5.22138 5.27704 5.33180 5.33594 5.39634 5.42594 5.50038 5.55056 5.62084 5.75990 5.78686 6.21395 6.48274 7.08102 7.25823 7.85640 8.03590 9.18214 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.028086 B = 0.002222 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.704916 B =12599.524650 C =12855.811714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.115 4.115 3 H 0.080 0.920 4 C -0.109 4.109 5 C -0.121 4.121 6 C -0.111 4.111 7 C -0.108 4.108 8 H 0.109 0.891 9 C 0.518 3.482 10 O -0.573 6.573 11 N -0.609 5.609 12 C 0.105 3.895 13 C -0.132 4.132 14 C -0.075 4.075 15 C -0.113 4.113 16 C 0.153 3.847 17 N -0.763 5.763 18 C -0.235 4.235 19 H 0.057 0.943 20 C -0.068 4.068 21 N -0.984 5.984 22 Si 0.957 3.043 23 H -0.278 1.278 24 H -0.296 1.296 25 H -0.252 1.252 26 C -0.120 4.120 27 C 0.113 3.887 28 C -0.090 4.090 29 H 0.061 0.939 30 H 0.044 0.956 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.037 0.963 36 H 0.094 0.906 37 H 0.081 0.919 38 H 0.108 0.892 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.062 0.938 42 H 0.079 0.921 43 H 0.062 0.938 44 H 0.060 0.940 45 H 0.032 0.968 46 H 0.021 0.979 47 H 0.365 0.635 48 H 0.258 0.742 49 H 0.083 0.917 50 H 0.057 0.943 51 H 0.076 0.924 52 H 0.075 0.925 53 H 0.084 0.916 54 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.941 0.095 -17.821 31.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.133 4.133 3 H 0.098 0.902 4 C -0.146 4.146 5 C -0.158 4.158 6 C -0.149 4.149 7 C -0.129 4.129 8 H 0.127 0.873 9 C 0.308 3.692 10 O -0.454 6.454 11 N -0.342 5.342 12 C -0.017 4.017 13 C -0.171 4.171 14 C -0.094 4.094 15 C -0.151 4.151 16 C 0.027 3.973 17 N -0.409 5.409 18 C -0.366 4.366 19 H 0.075 0.925 20 C -0.259 4.259 21 N -0.634 5.634 22 Si 0.784 3.216 23 H -0.204 1.204 24 H -0.222 1.222 25 H -0.177 1.177 26 C -0.158 4.158 27 C -0.010 4.010 28 C -0.128 4.128 29 H 0.080 0.920 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.056 0.944 36 H 0.112 0.888 37 H 0.099 0.901 38 H 0.126 0.874 39 H 0.101 0.899 40 H 0.100 0.900 41 H 0.080 0.920 42 H 0.097 0.903 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.050 0.950 46 H 0.039 0.961 47 H 0.198 0.802 48 H 0.066 0.934 49 H 0.101 0.899 50 H 0.076 0.924 51 H 0.094 0.906 52 H 0.094 0.906 53 H 0.103 0.897 54 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -26.193 0.416 -17.999 31.784 hybrid contribution 0.410 0.798 1.191 1.492 sum -25.783 1.215 -16.808 30.802 Atomic orbital electron populations 1.21769 0.95245 1.01767 1.01088 1.21503 0.95540 1.01591 0.94643 0.90226 1.21551 0.95145 1.00786 0.97130 1.21533 0.96167 0.99646 0.98477 1.21693 1.01421 0.99981 0.91782 1.21430 0.97822 0.91865 1.01770 0.87312 1.21122 0.81232 0.92197 0.74634 1.90549 1.55528 1.48408 1.50889 1.48261 1.07501 1.07716 1.70688 1.21978 0.91750 0.90064 0.97937 1.21967 0.99900 0.97391 0.97797 1.21004 0.95974 0.95154 0.97281 1.21698 0.95925 0.99048 0.98419 1.20889 0.91623 0.97683 0.87107 1.42821 1.31636 1.44810 1.21629 1.19068 1.02197 1.12927 1.02381 0.92465 1.25560 0.97748 1.02028 1.00591 1.69893 1.21131 1.44733 1.27680 0.85375 0.77196 0.79811 0.79198 1.20382 1.22227 1.17706 1.21886 0.97088 0.99727 0.97101 1.21555 0.98532 0.83026 0.97842 1.21376 0.92336 1.01193 0.97903 0.92006 0.93652 0.93023 0.92700 0.90952 0.90608 0.94412 0.88768 0.90082 0.87426 0.89924 0.89954 0.91967 0.90258 0.91912 0.92141 0.95009 0.96092 0.80248 0.93351 0.89882 0.92444 0.90602 0.90649 0.89727 0.93257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.20 71.98 0.66 -1.47 16 2 C -0.11 -1.98 2.43 -10.79 -0.03 -2.01 16 3 H 0.08 1.93 5.14 -2.39 -0.01 1.92 16 4 C -0.11 -1.52 5.20 30.60 0.16 -1.36 16 5 C -0.12 -1.65 5.70 30.60 0.17 -1.48 16 6 C -0.11 -1.21 5.06 30.59 0.15 -1.06 16 7 C -0.11 -1.56 2.16 -11.54 -0.02 -1.58 16 8 H 0.11 1.27 7.31 -2.39 -0.02 1.25 16 9 C 0.52 10.62 5.59 87.66 0.49 11.11 16 10 O -0.57 -15.76 12.76 -3.04 -0.04 -15.80 16 11 N -0.61 -10.96 2.98 -819.73 -2.44 -13.40 16 12 C 0.10 1.46 5.18 86.22 0.45 1.91 16 13 C -0.13 -2.36 5.13 30.53 0.16 -2.21 16 14 C -0.08 -1.50 2.15 -10.77 -0.02 -1.52 16 15 C -0.11 -3.01 4.80 30.59 0.15 -2.86 16 16 C 0.15 5.47 6.02 86.38 0.52 5.99 16 17 N -0.76 -35.53 5.41 -343.46 -1.86 -37.38 16 18 C -0.23 -13.45 10.47 84.03 0.88 -12.57 16 19 H 0.06 3.57 8.06 -2.91 -0.02 3.55 16 20 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 21 N -0.98 -63.22 13.97 21.65 0.30 -62.92 16 22 Si 0.96 45.56 27.74 68.60 1.90 47.46 16 23 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 24 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 25 H -0.25 -10.84 6.52 99.48 0.65 -10.19 16 26 C -0.12 -2.20 5.36 30.67 0.16 -2.04 16 27 C 0.11 2.10 6.42 86.36 0.55 2.65 16 28 C -0.09 -1.40 4.46 30.60 0.14 -1.26 16 29 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.04 0.70 7.22 -2.39 -0.02 0.68 16 36 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.08 0.75 5.77 -2.39 -0.01 0.74 16 38 H 0.11 1.11 4.63 -2.38 -0.01 1.10 16 39 H 0.08 1.01 8.14 -2.39 -0.02 1.00 16 40 H 0.08 1.57 6.50 -2.39 -0.02 1.55 16 41 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 43 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 44 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 45 H 0.03 1.13 6.53 -2.39 -0.02 1.12 16 46 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 47 H 0.36 16.20 5.53 -92.71 -0.51 15.69 16 48 H 0.26 15.75 8.31 -92.70 -0.77 14.98 16 49 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 50 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 51 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 52 H 0.08 1.64 7.03 -2.39 -0.02 1.62 16 53 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 54 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 Total: -1.00 -71.62 393.01 3.19 -68.42 By element: Atomic # 1 Polarization: 26.65 SS G_CDS: 0.29 Total: 26.94 kcal Atomic # 6 Polarization: -18.36 SS G_CDS: 5.04 Total: -13.32 kcal Atomic # 7 Polarization: -109.70 SS G_CDS: -4.00 Total: -113.70 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: -0.04 Total: -15.80 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 1.90 Total: 47.46 kcal Total: -71.62 3.19 -68.42 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753573228.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.579 kcal (2) G-P(sol) polarization free energy of solvation -71.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds