Wall clock time and date at job start Tue Mar 31 2020 15:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47515 * 2 1 4 4 C 1.53002 * 109.47171 * 120.00302 * 2 1 3 5 5 C 1.52993 * 109.47097 * 179.97438 * 4 2 1 6 6 C 1.53007 * 109.47087 * 299.99685 * 5 4 2 7 7 C 1.53002 * 109.46895 * 60.00191 * 6 5 4 8 8 H 1.08997 * 109.47148 * 60.00260 * 7 6 5 9 9 C 1.50697 * 109.46968 * 180.02562 * 7 6 5 10 10 O 1.21277 * 120.00053 * 97.93707 * 9 7 6 11 11 N 1.34780 * 119.99716 * 277.66447 * 9 7 6 12 12 C 1.46926 * 120.62880 * 175.62651 * 11 9 7 13 13 C 1.53617 * 108.54720 * 126.36606 * 12 11 9 14 14 C 1.53039 * 109.24378 * 54.85132 * 13 12 11 15 15 C 1.52999 * 109.46212 * 178.49323 * 14 13 12 16 16 C 1.53002 * 109.47210 * 295.06714 * 15 14 13 17 17 N 1.46494 * 109.47116 * 179.97438 * 16 15 14 18 18 C 1.36944 * 119.99799 * 179.97438 * 17 16 15 19 19 H 1.07997 * 120.00069 * 0.02562 * 18 17 16 20 20 C 1.38810 * 119.99671 * 179.97438 * 18 17 16 21 21 N 1.31619 * 120.00549 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99815 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.46875 * 90.00130 * 22 20 18 24 24 H 1.48499 * 109.47180 * 209.99954 * 22 20 18 25 25 H 1.48498 * 109.47113 * 330.00219 * 22 20 18 26 26 C 1.53045 * 109.54100 * 298.51572 * 14 13 12 27 27 C 1.46922 * 120.63034 * 355.89925 * 11 9 7 28 28 C 1.52996 * 109.46651 * 239.99999 * 2 1 3 29 29 H 1.08997 * 109.47515 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46878 * 300.00385 * 1 2 3 31 31 H 1.08996 * 109.46933 * 59.99724 * 1 2 3 32 32 H 1.09003 * 109.47089 * 299.99767 * 4 2 1 33 33 H 1.08997 * 109.47148 * 59.99473 * 4 2 1 34 34 H 1.08997 * 109.47495 * 59.99755 * 5 4 2 35 35 H 1.09001 * 109.47302 * 179.97438 * 5 4 2 36 36 H 1.08997 * 109.47011 * 300.00367 * 6 5 4 37 37 H 1.08997 * 109.47144 * 180.02562 * 6 5 4 38 38 H 1.09005 * 109.58606 * 246.19865 * 12 11 9 39 39 H 1.08996 * 109.58703 * 6.61979 * 12 11 9 40 40 H 1.09000 * 109.63776 * 294.86205 * 13 12 11 41 41 H 1.08999 * 109.46193 * 174.73583 * 13 12 11 42 42 H 1.08997 * 109.44891 * 58.52483 * 14 13 12 43 43 H 1.08996 * 109.47477 * 55.06927 * 15 14 13 44 44 H 1.09005 * 109.47113 * 175.06901 * 15 14 13 45 45 H 1.08996 * 109.47075 * 300.00459 * 16 15 14 46 46 H 1.09005 * 109.46929 * 60.00075 * 16 15 14 47 47 H 0.97004 * 120.00197 * 0.02562 * 17 16 15 48 48 H 0.96996 * 120.00212 * 179.97438 * 21 20 18 49 49 H 1.09003 * 109.49499 * 301.41127 * 26 14 13 50 50 H 1.08998 * 109.49917 * 181.31606 * 26 14 13 51 51 H 1.08997 * 109.58819 * 353.37319 * 27 11 9 52 52 H 1.08998 * 109.58663 * 113.66071 * 27 11 9 53 53 H 1.09000 * 109.47708 * 60.00424 * 28 2 1 54 54 H 1.09000 * 109.47653 * 300.00264 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5700 -0.7219 1.2489 6 6 4.0795 -1.4435 -0.0004 7 6 3.5694 -0.7222 -1.2496 8 1 3.9332 0.3053 -1.2499 9 6 4.0707 -1.4333 -2.4801 10 8 3.3543 -2.2227 -3.0584 11 7 5.3132 -1.1879 -2.9410 12 6 5.8511 -1.9421 -4.0814 13 6 6.3362 -0.9431 -5.1428 14 6 7.3333 0.0265 -4.5045 15 6 7.8482 1.0005 -5.5662 16 6 8.6475 0.2308 -6.6197 17 7 9.1400 1.1632 -7.6365 18 6 9.8867 0.6994 -8.6866 19 1 10.1122 -0.3538 -8.7652 20 6 10.3529 1.5829 -9.6504 21 7 10.0777 2.8664 -9.5549 22 14 11.3710 0.9501 -11.0831 23 1 10.4713 0.5872 -12.2075 24 1 12.3142 2.0083 -11.5257 25 1 12.1367 -0.2481 -10.6552 26 6 6.6415 0.8100 -3.3866 27 6 6.1578 -0.1653 -2.3088 28 6 2.0399 -0.7213 -1.2492 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.6767 -0.2075 2.1392 33 1 1.6767 -1.7489 1.2492 34 1 3.9337 0.3056 1.2486 35 1 3.9334 -1.2353 2.1391 36 1 3.7157 -2.4710 -0.0002 37 1 5.1694 -1.4443 -0.0005 38 1 6.6851 -2.5607 -3.7498 39 1 5.0695 -2.5743 -4.5027 40 1 5.4865 -0.3848 -5.5358 41 1 6.8231 -1.4836 -5.9546 42 1 8.1707 -0.5347 -4.0899 43 1 7.0038 1.4982 -6.0429 44 1 8.4903 1.7450 -5.0954 45 1 9.4919 -0.2669 -6.1430 46 1 8.0054 -0.5138 -7.0904 47 1 8.9377 2.1093 -7.5657 48 1 10.4038 3.4838 -10.2282 49 1 5.7888 1.3519 -3.7960 50 1 7.3458 1.5169 -2.9481 51 1 5.5786 0.3753 -1.5603 52 1 7.0149 -0.6421 -1.8334 53 1 1.6766 -0.2074 -2.1393 54 1 1.6765 -1.7489 -1.2493 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753573229.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:21 Heat of formation + Delta-G solvation = -87.067203 kcal Electronic energy + Delta-G solvation = -27922.644435 eV Core-core repulsion = 24277.733424 eV Total energy + Delta-G solvation = -3644.911011 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.63627 -39.59279 -38.52436 -36.90009 -35.10698 -33.75132 -32.91412 -32.36676 -31.53532 -29.87839 -27.30227 -26.68109 -25.18964 -24.66550 -23.49750 -22.70481 -22.32795 -21.29027 -20.62887 -19.77111 -19.14458 -18.09361 -17.00050 -16.70232 -16.45876 -16.06362 -15.78890 -15.53040 -15.40190 -15.32054 -14.98116 -14.94362 -14.86893 -14.43854 -14.29832 -14.04551 -13.86747 -13.47054 -13.29101 -13.18867 -13.04475 -12.85455 -12.74864 -12.53837 -12.37671 -12.28883 -12.22320 -12.13070 -12.02777 -11.95389 -11.85358 -11.63330 -11.46525 -11.37089 -11.29441 -11.16782 -10.98256 -10.91218 -10.51033 -9.64404 -9.00737 -7.97055 -5.26111 1.45694 1.47905 1.56386 1.59859 2.01146 2.54647 3.36277 3.42345 3.67157 3.70539 3.78502 3.79305 3.82700 4.08508 4.12383 4.16360 4.21667 4.25766 4.30565 4.39184 4.41270 4.49091 4.54419 4.55563 4.60425 4.64961 4.69436 4.75856 4.79066 4.85432 4.88083 4.89270 4.97610 4.99150 5.05779 5.09911 5.10560 5.16427 5.17838 5.20560 5.30489 5.31263 5.34751 5.39104 5.41151 5.42957 5.47862 5.56113 5.59137 5.62196 6.25985 6.42998 7.16660 7.31380 8.08786 8.31246 9.26635 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.030473 B = 0.001966 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.623033 B =14237.535602 C =14287.094011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.087 4.087 3 H 0.081 0.919 4 C -0.116 4.116 5 C -0.113 4.113 6 C -0.103 4.103 7 C -0.100 4.100 8 H 0.115 0.885 9 C 0.511 3.489 10 O -0.592 6.592 11 N -0.609 5.609 12 C 0.114 3.886 13 C -0.125 4.125 14 C -0.073 4.073 15 C -0.107 4.107 16 C 0.149 3.851 17 N -0.750 5.750 18 C -0.247 4.247 19 H 0.075 0.925 20 C -0.079 4.079 21 N -0.970 5.970 22 Si 0.976 3.024 23 H -0.287 1.287 24 H -0.293 1.293 25 H -0.269 1.269 26 C -0.126 4.126 27 C 0.105 3.895 28 C -0.094 4.094 29 H 0.048 0.952 30 H 0.067 0.933 31 H 0.050 0.950 32 H 0.076 0.924 33 H 0.053 0.947 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.051 0.949 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.069 0.931 40 H 0.049 0.951 41 H 0.071 0.929 42 H 0.083 0.917 43 H 0.049 0.951 44 H 0.064 0.936 45 H 0.020 0.980 46 H 0.019 0.981 47 H 0.373 0.627 48 H 0.252 0.748 49 H 0.058 0.942 50 H 0.096 0.904 51 H 0.111 0.889 52 H 0.090 0.910 53 H 0.049 0.951 54 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.056 -6.070 28.337 32.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.106 4.106 3 H 0.099 0.901 4 C -0.153 4.153 5 C -0.150 4.150 6 C -0.141 4.141 7 C -0.121 4.121 8 H 0.133 0.867 9 C 0.301 3.699 10 O -0.473 6.473 11 N -0.341 5.341 12 C -0.009 4.009 13 C -0.163 4.163 14 C -0.092 4.092 15 C -0.145 4.145 16 C 0.023 3.977 17 N -0.392 5.392 18 C -0.379 4.379 19 H 0.093 0.907 20 C -0.271 4.271 21 N -0.621 5.621 22 Si 0.804 3.196 23 H -0.215 1.215 24 H -0.219 1.219 25 H -0.193 1.193 26 C -0.164 4.164 27 C -0.017 4.017 28 C -0.132 4.132 29 H 0.067 0.933 30 H 0.086 0.914 31 H 0.069 0.931 32 H 0.094 0.906 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.070 0.930 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.088 0.912 40 H 0.068 0.932 41 H 0.090 0.910 42 H 0.101 0.899 43 H 0.068 0.932 44 H 0.083 0.917 45 H 0.038 0.962 46 H 0.036 0.964 47 H 0.204 0.796 48 H 0.061 0.939 49 H 0.077 0.923 50 H 0.114 0.886 51 H 0.129 0.871 52 H 0.108 0.892 53 H 0.068 0.932 54 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -15.330 -6.632 27.947 32.558 hybrid contribution 0.413 0.050 -1.679 1.730 sum -14.917 -6.582 26.268 30.917 Atomic orbital electron populations 1.21824 0.95000 1.01664 1.02050 1.21131 0.95741 0.99807 0.93884 0.90080 1.21629 0.95844 1.00410 0.97434 1.21520 0.95308 1.01505 0.96664 1.21473 1.01196 0.98831 0.92632 1.21410 0.97394 1.01240 0.92058 0.86743 1.21337 0.80645 0.81822 0.86070 1.90654 1.56736 1.38986 1.60891 1.48299 1.14793 1.38529 1.32446 1.21635 0.98793 0.93937 0.86543 1.22014 0.98776 0.97643 0.97869 1.21015 0.97630 0.95694 0.94903 1.21629 0.98826 0.98234 0.95837 1.20897 0.95012 0.92512 0.89239 1.42651 1.63150 1.06939 1.26508 1.19659 1.23967 0.93334 1.00968 0.90747 1.25622 1.03431 0.95763 1.02268 1.69816 1.52177 1.02585 1.37506 0.85111 0.78082 0.77166 0.79231 1.21453 1.21929 1.19336 1.21964 1.00781 0.97977 0.95687 1.22075 0.95408 0.88837 0.95351 1.21390 0.92808 1.00766 0.98208 0.93277 0.91405 0.93105 0.90573 0.92792 0.90251 0.90507 0.93017 0.90208 0.89906 0.91220 0.93232 0.91047 0.89880 0.93248 0.91735 0.96242 0.96353 0.79560 0.93946 0.92320 0.88592 0.87146 0.89190 0.93248 0.93027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.19 71.98 0.66 -1.03 16 2 C -0.09 -1.00 2.72 -10.79 -0.03 -1.03 16 3 H 0.08 0.78 8.14 -2.39 -0.02 0.77 16 4 C -0.12 -1.08 5.20 30.59 0.16 -0.92 16 5 C -0.11 -0.87 5.92 30.59 0.18 -0.69 16 6 C -0.10 -1.19 5.15 30.60 0.16 -1.04 16 7 C -0.10 -1.51 1.69 -11.56 -0.02 -1.53 16 8 H 0.11 1.23 6.22 -2.39 -0.01 1.22 16 9 C 0.51 11.71 6.83 87.66 0.60 12.31 16 10 O -0.59 -19.04 15.47 -3.02 -0.05 -19.09 16 11 N -0.61 -12.02 2.97 -818.09 -2.43 -14.45 16 12 C 0.11 2.54 6.47 86.51 0.56 3.10 16 13 C -0.12 -3.06 5.16 30.81 0.16 -2.90 16 14 C -0.07 -1.64 2.15 -10.77 -0.02 -1.67 16 15 C -0.11 -3.30 4.80 30.59 0.15 -3.15 16 16 C 0.15 5.99 6.02 86.38 0.52 6.51 16 17 N -0.75 -39.27 5.60 -343.46 -1.92 -41.19 16 18 C -0.25 -14.20 9.99 84.03 0.84 -13.36 16 19 H 0.07 4.10 7.83 -2.91 -0.02 4.08 16 20 C -0.08 -4.62 5.50 84.86 0.47 -4.15 16 21 N -0.97 -60.36 13.06 21.65 0.28 -60.08 16 22 Si 0.98 46.82 29.55 68.60 2.03 48.85 16 23 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 24 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 25 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 26 C -0.13 -2.08 5.36 30.67 0.16 -1.92 16 27 C 0.10 1.35 5.94 86.36 0.51 1.86 16 28 C -0.09 -1.59 3.97 30.58 0.12 -1.47 16 29 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 35 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 36 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.08 0.74 7.78 -2.39 -0.02 0.72 16 38 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 39 H 0.07 1.86 7.00 -2.39 -0.02 1.85 16 40 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.07 1.90 6.50 -2.39 -0.02 1.88 16 42 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 44 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 45 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.02 0.75 6.53 -2.38 -0.02 0.74 16 47 H 0.37 20.65 7.67 -92.71 -0.71 19.94 16 48 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 49 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 50 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 51 H 0.11 0.90 5.41 -2.39 -0.01 0.89 16 52 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 53 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 54 H 0.05 1.09 7.88 -2.39 -0.02 1.08 16 Total: -1.00 -72.74 405.88 3.22 -69.52 By element: Atomic # 1 Polarization: 27.37 SS G_CDS: 0.13 Total: 27.50 kcal Atomic # 6 Polarization: -16.24 SS G_CDS: 5.18 Total: -11.07 kcal Atomic # 7 Polarization: -111.65 SS G_CDS: -4.07 Total: -115.72 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: -0.05 Total: -19.09 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.85 kcal Total: -72.74 3.22 -69.52 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753573229.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.546 kcal (2) G-P(sol) polarization free energy of solvation -72.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds