Wall clock time and date at job start Tue Mar 31 2020 15:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47487 * 2 1 4 4 C 1.53005 * 109.46957 * 120.00296 * 2 1 3 5 5 C 1.52998 * 109.46957 * 180.02562 * 4 2 1 6 6 C 1.53001 * 109.47071 * 299.99782 * 5 4 2 7 7 C 1.53005 * 109.47052 * 60.00276 * 6 5 4 8 8 H 1.09000 * 109.47157 * 180.02562 * 7 6 5 9 9 C 1.50698 * 109.47120 * 60.00004 * 7 6 5 10 10 O 1.21278 * 120.00235 * 244.95474 * 9 7 6 11 11 N 1.34777 * 119.99862 * 64.95414 * 9 7 6 12 12 C 1.46927 * 120.63331 * 5.15670 * 11 9 7 13 13 C 1.53622 * 108.54153 * 126.36828 * 12 11 9 14 14 C 1.53039 * 109.24356 * 54.85872 * 13 12 11 15 15 C 1.53005 * 109.44789 * 178.49549 * 14 13 12 16 16 C 1.53000 * 109.47207 * 295.05989 * 15 14 13 17 17 N 1.46501 * 109.47020 * 180.02562 * 16 15 14 18 18 C 1.36935 * 119.99807 * 180.02562 * 17 16 15 19 19 H 1.07996 * 119.99886 * 359.97438 * 18 17 16 20 20 C 1.38812 * 119.99776 * 180.02562 * 18 17 16 21 21 N 1.31622 * 120.00045 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99991 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47398 * 89.99359 * 22 20 18 24 24 H 1.48500 * 109.47215 * 209.99752 * 22 20 18 25 25 H 1.48505 * 109.47012 * 329.99810 * 22 20 18 26 26 C 1.53042 * 109.53693 * 298.51022 * 14 13 12 27 27 C 1.46929 * 120.62913 * 185.43506 * 11 9 7 28 28 C 1.52998 * 109.46957 * 299.99794 * 7 6 5 29 29 H 1.08990 * 109.47287 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47287 * 300.00293 * 1 2 3 31 31 H 1.09007 * 109.46961 * 59.99751 * 1 2 3 32 32 H 1.09000 * 109.46683 * 60.00019 * 4 2 1 33 33 H 1.08998 * 109.46641 * 299.99806 * 4 2 1 34 34 H 1.08995 * 109.47319 * 180.02562 * 5 4 2 35 35 H 1.08994 * 109.47366 * 59.99556 * 5 4 2 36 36 H 1.09003 * 109.47397 * 300.00096 * 6 5 4 37 37 H 1.09005 * 109.47102 * 180.02562 * 6 5 4 38 38 H 1.08997 * 109.58706 * 246.19905 * 12 11 9 39 39 H 1.08997 * 109.58445 * 6.62912 * 12 11 9 40 40 H 1.09007 * 109.63371 * 294.86459 * 13 12 11 41 41 H 1.09005 * 109.45458 * 174.74498 * 13 12 11 42 42 H 1.08997 * 109.46166 * 58.52978 * 14 13 12 43 43 H 1.09003 * 109.47132 * 55.06101 * 15 14 13 44 44 H 1.08998 * 109.46577 * 175.06073 * 15 14 13 45 45 H 1.09003 * 109.47166 * 300.00091 * 16 15 14 46 46 H 1.08998 * 109.46879 * 60.00160 * 16 15 14 47 47 H 0.97000 * 119.99795 * 359.97438 * 17 16 15 48 48 H 0.97006 * 119.99699 * 180.02562 * 21 20 18 49 49 H 1.09000 * 109.49476 * 301.41534 * 26 14 13 50 50 H 1.09002 * 109.52227 * 181.33848 * 26 14 13 51 51 H 1.09002 * 109.58747 * 353.37944 * 27 11 9 52 52 H 1.09008 * 109.58362 * 113.79651 * 27 11 9 53 53 H 1.09007 * 109.46961 * 180.02562 * 28 7 6 54 54 H 1.09003 * 109.47088 * 299.99933 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5699 -0.7208 1.2496 6 6 4.0805 -1.4417 0.0003 7 6 3.5705 -0.7203 -1.2489 8 1 3.9338 -1.2341 -2.1389 9 6 4.0724 0.7006 -1.2486 10 8 3.2877 1.6209 -1.1578 11 7 5.3933 0.9488 -1.3490 12 6 6.3460 -0.1471 -1.5726 13 6 7.2009 0.1922 -2.8030 14 6 7.8544 1.5612 -2.6012 15 6 8.7370 1.8872 -3.8078 16 6 9.8954 0.8902 -3.8766 17 7 10.7408 1.2028 -5.0316 18 6 11.8460 0.4394 -5.2977 19 1 12.0947 -0.3928 -4.6559 20 6 12.6473 0.7359 -6.3917 21 7 12.3444 1.7505 -7.1735 22 14 14.1554 -0.3050 -6.7543 23 1 13.7781 -1.4285 -7.6491 24 1 15.1866 0.5320 -7.4186 25 1 14.7006 -0.8462 -5.4834 26 6 6.7689 2.6306 -2.4597 27 6 5.9085 2.3197 -1.2310 28 6 2.0405 -0.7209 -1.2493 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.6766 -1.7490 1.2491 33 1 1.6766 -0.2075 2.1392 34 1 3.9333 -1.2350 2.1393 35 1 3.9329 0.3069 1.2498 36 1 3.7175 -2.4695 0.0000 37 1 5.1705 -1.4417 0.0008 38 1 6.9872 -0.2580 -0.6981 39 1 5.8012 -1.0746 -1.7489 40 1 6.5700 0.2175 -3.6916 41 1 7.9746 -0.5655 -2.9277 42 1 8.4655 1.5424 -1.6989 43 1 8.1445 1.8194 -4.7203 44 1 9.1328 2.8977 -3.7059 45 1 10.4879 0.9580 -2.9642 46 1 9.4995 -0.1202 -3.9785 47 1 10.5172 1.9500 -5.6082 48 1 12.9042 1.9574 -7.9383 49 1 6.1421 2.6330 -3.3515 50 1 7.2346 3.6088 -2.3397 51 1 5.0750 3.0204 -1.1817 52 1 6.5147 2.4058 -0.3291 53 1 1.6772 -0.2074 -2.1395 54 1 1.6775 -1.7487 -1.2496 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753573230.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:25 Heat of formation + Delta-G solvation = -78.936386 kcal Electronic energy + Delta-G solvation = -28402.702421 eV Core-core repulsion = 24758.143989 eV Total energy + Delta-G solvation = -3644.558432 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.86175 -39.61677 -38.10125 -36.86433 -35.17254 -33.80418 -32.80885 -32.24788 -31.54927 -29.85777 -27.26933 -26.73551 -25.15160 -24.31313 -23.85506 -22.72188 -22.13016 -21.42110 -20.96896 -19.55590 -19.10840 -17.79926 -16.79195 -16.70779 -16.59591 -16.17846 -15.77535 -15.50265 -15.39629 -15.20762 -15.03138 -14.97014 -14.68013 -14.36408 -14.32705 -13.97613 -13.79960 -13.32885 -13.19274 -13.06767 -12.99683 -12.91412 -12.83321 -12.56475 -12.48917 -12.32219 -12.31209 -12.16405 -12.08925 -11.93405 -11.81010 -11.62516 -11.54257 -11.27740 -11.17958 -10.96999 -10.91100 -10.87651 -10.29051 -9.56811 -8.98973 -7.95191 -5.24322 1.47375 1.49601 1.58066 1.68340 2.06879 2.56377 3.38445 3.49047 3.69509 3.74747 3.79124 3.80984 3.87238 4.03805 4.13767 4.19605 4.26905 4.29430 4.35214 4.38888 4.47110 4.49399 4.56341 4.59568 4.63521 4.66667 4.72725 4.78801 4.83183 4.84214 4.90480 4.93700 4.97195 4.99059 5.06029 5.07523 5.09598 5.11164 5.17862 5.23082 5.30061 5.33470 5.34281 5.41125 5.43081 5.49594 5.50476 5.56227 5.62686 5.75841 6.27496 6.48893 7.25674 7.32809 8.10710 8.32407 9.28659 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.029203 B = 0.002123 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.588940 B =13185.292513 C =13533.061724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.111 4.111 3 H 0.072 0.928 4 C -0.109 4.109 5 C -0.121 4.121 6 C -0.110 4.110 7 C -0.108 4.108 8 H 0.110 0.890 9 C 0.517 3.483 10 O -0.577 6.577 11 N -0.610 5.610 12 C 0.108 3.892 13 C -0.131 4.131 14 C -0.073 4.073 15 C -0.109 4.109 16 C 0.152 3.848 17 N -0.752 5.752 18 C -0.244 4.244 19 H 0.078 0.922 20 C -0.081 4.081 21 N -0.972 5.972 22 Si 0.976 3.024 23 H -0.286 1.286 24 H -0.296 1.296 25 H -0.267 1.267 26 C -0.121 4.121 27 C 0.114 3.886 28 C -0.090 4.090 29 H 0.063 0.937 30 H 0.051 0.949 31 H 0.043 0.957 32 H 0.074 0.926 33 H 0.055 0.945 34 H 0.077 0.923 35 H 0.037 0.963 36 H 0.094 0.906 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.107 0.893 40 H 0.056 0.944 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.049 0.951 44 H 0.054 0.946 45 H 0.019 0.981 46 H 0.029 0.971 47 H 0.371 0.629 48 H 0.251 0.749 49 H 0.051 0.949 50 H 0.080 0.920 51 H 0.074 0.926 52 H 0.080 0.920 53 H 0.047 0.953 54 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.077 -7.769 19.274 30.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.129 4.129 3 H 0.090 0.910 4 C -0.147 4.147 5 C -0.158 4.158 6 C -0.147 4.147 7 C -0.129 4.129 8 H 0.128 0.872 9 C 0.308 3.692 10 O -0.457 6.457 11 N -0.342 5.342 12 C -0.014 4.014 13 C -0.169 4.169 14 C -0.092 4.092 15 C -0.147 4.147 16 C 0.026 3.974 17 N -0.394 5.394 18 C -0.376 4.376 19 H 0.096 0.904 20 C -0.273 4.273 21 N -0.623 5.623 22 Si 0.805 3.195 23 H -0.213 1.213 24 H -0.223 1.223 25 H -0.192 1.192 26 C -0.159 4.159 27 C -0.008 4.008 28 C -0.128 4.128 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.092 0.908 33 H 0.074 0.926 34 H 0.095 0.905 35 H 0.055 0.945 36 H 0.113 0.887 37 H 0.100 0.900 38 H 0.106 0.894 39 H 0.125 0.875 40 H 0.075 0.925 41 H 0.102 0.898 42 H 0.100 0.900 43 H 0.068 0.932 44 H 0.073 0.927 45 H 0.037 0.963 46 H 0.046 0.954 47 H 0.203 0.797 48 H 0.059 0.941 49 H 0.070 0.930 50 H 0.098 0.902 51 H 0.093 0.907 52 H 0.098 0.902 53 H 0.066 0.934 54 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -22.364 -7.432 19.381 30.512 hybrid contribution 0.923 0.458 -1.050 1.471 sum -21.441 -6.974 18.331 29.058 Atomic orbital electron populations 1.21764 0.95141 1.01858 1.01086 1.21418 0.95653 1.01064 0.94794 0.90968 1.21564 0.95214 1.00877 0.97007 1.21535 0.96076 0.99644 0.98569 1.21680 1.01514 0.99922 0.91628 1.21442 0.97792 0.91773 1.01904 0.87216 1.21150 0.81429 0.92270 0.74397 1.90575 1.55326 1.48074 1.51719 1.48253 1.06347 1.08611 1.71016 1.22136 0.91491 0.89665 0.98140 1.22102 0.99362 0.97362 0.98052 1.20995 0.95359 0.95058 0.97757 1.21635 0.95892 0.98716 0.98438 1.20890 0.90744 0.96858 0.88921 1.42686 1.29173 1.36428 1.31124 1.19675 1.01701 1.08461 1.07774 0.90401 1.25646 1.02975 1.00258 0.98455 1.69834 1.41658 1.32015 1.18811 0.85096 0.78827 0.77557 0.78028 1.21288 1.22291 1.19196 1.21879 0.96829 0.99377 0.97827 1.21544 0.97779 0.83375 0.98143 1.21370 0.92392 1.01203 0.97850 0.91839 0.92980 0.93734 0.90775 0.92644 0.90474 0.94461 0.88704 0.90014 0.89438 0.87473 0.92533 0.89825 0.89991 0.93187 0.92718 0.96298 0.95356 0.79742 0.94050 0.92993 0.90172 0.90733 0.90170 0.93369 0.89558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 9.19 71.98 0.66 -1.51 16 2 C -0.11 -1.95 2.43 -10.79 -0.03 -1.98 16 3 H 0.07 1.79 5.33 -2.39 -0.01 1.78 16 4 C -0.11 -1.51 5.20 30.60 0.16 -1.35 16 5 C -0.12 -1.62 5.70 30.59 0.17 -1.45 16 6 C -0.11 -1.18 5.09 30.60 0.16 -1.02 16 7 C -0.11 -1.61 2.16 -11.54 -0.02 -1.63 16 8 H 0.11 1.31 7.20 -2.39 -0.02 1.29 16 9 C 0.52 11.11 5.56 87.66 0.49 11.59 16 10 O -0.58 -16.67 12.91 -3.02 -0.04 -16.71 16 11 N -0.61 -11.60 2.97 -818.07 -2.43 -14.02 16 12 C 0.11 1.57 4.93 86.51 0.43 2.00 16 13 C -0.13 -2.57 5.16 30.82 0.16 -2.41 16 14 C -0.07 -1.63 2.15 -10.77 -0.02 -1.65 16 15 C -0.11 -3.37 4.80 30.60 0.15 -3.22 16 16 C 0.15 5.86 6.02 86.38 0.52 6.38 16 17 N -0.75 -38.72 5.60 -343.45 -1.92 -40.65 16 18 C -0.24 -13.73 9.99 84.03 0.84 -12.89 16 19 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 20 C -0.08 -4.73 5.50 84.86 0.47 -4.26 16 21 N -0.97 -60.32 13.06 21.65 0.28 -60.04 16 22 Si 0.98 46.13 29.55 68.60 2.03 48.16 16 23 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 24 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 25 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 26 C -0.12 -2.57 5.36 30.67 0.16 -2.41 16 27 C 0.11 2.29 6.44 86.36 0.56 2.84 16 28 C -0.09 -1.44 4.40 30.59 0.13 -1.30 16 29 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.04 0.74 8.14 -2.38 -0.02 0.72 16 32 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.04 0.68 7.22 -2.39 -0.02 0.66 16 36 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.08 0.74 5.79 -2.38 -0.01 0.72 16 38 H 0.09 1.04 8.13 -2.39 -0.02 1.02 16 39 H 0.11 1.14 4.98 -2.39 -0.01 1.13 16 40 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 41 H 0.08 1.69 6.50 -2.38 -0.02 1.67 16 42 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 45 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 46 H 0.03 1.06 6.53 -2.39 -0.02 1.04 16 47 H 0.37 20.52 7.67 -92.71 -0.71 19.80 16 48 H 0.25 15.05 8.31 -92.70 -0.77 14.28 16 49 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 50 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 51 H 0.07 1.75 7.00 -2.39 -0.02 1.73 16 52 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 53 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 54 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -69.98 396.40 3.04 -66.94 By element: Atomic # 1 Polarization: 30.46 SS G_CDS: 0.15 Total: 30.60 kcal Atomic # 6 Polarization: -19.26 SS G_CDS: 4.98 Total: -14.28 kcal Atomic # 7 Polarization: -110.64 SS G_CDS: -4.07 Total: -114.71 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: -0.04 Total: -16.71 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Total: -69.98 3.04 -66.94 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753573230.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.997 kcal (2) G-P(sol) polarization free energy of solvation -69.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds