Wall clock time and date at job start Tue Mar 31 2020 15:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08998 * 109.47714 * 2 1 4 4 C 1.53004 * 109.47101 * 239.99765 * 2 1 3 5 5 C 1.52995 * 109.47418 * 180.02562 * 4 2 1 6 6 C 1.52995 * 109.47242 * 60.00082 * 5 4 2 7 7 C 1.53009 * 109.47339 * 300.00319 * 6 5 4 8 8 H 1.08996 * 109.46662 * 299.99981 * 7 6 5 9 9 C 1.50700 * 109.47113 * 179.97438 * 7 6 5 10 10 O 1.21284 * 119.99752 * 264.69615 * 9 7 6 11 11 N 1.34774 * 119.99818 * 84.97638 * 9 7 6 12 12 C 1.46924 * 120.63357 * 4.14300 * 11 9 7 13 13 C 1.52760 * 109.00967 * 233.58604 * 12 11 9 14 14 C 1.53047 * 109.38175 * 305.58994 * 13 12 11 15 15 C 1.52998 * 109.45895 * 181.26020 * 14 13 12 16 16 C 1.52998 * 109.47401 * 64.92944 * 15 14 13 17 17 N 1.46499 * 109.47358 * 179.97438 * 16 15 14 18 18 C 1.36941 * 119.99990 * 179.97438 * 17 16 15 19 19 H 1.07999 * 119.99961 * 0.02562 * 18 17 16 20 20 C 1.38813 * 119.99985 * 180.02562 * 18 17 16 21 21 N 1.31623 * 119.99894 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00226 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47129 * 59.99569 * 22 20 18 24 24 H 1.48501 * 109.47488 * 179.97438 * 22 20 18 25 25 H 1.48506 * 109.47170 * 300.00152 * 22 20 18 26 26 C 1.53034 * 109.54126 * 61.23746 * 14 13 12 27 27 C 1.46930 * 120.62697 * 184.42530 * 11 9 7 28 28 C 1.52998 * 109.46704 * 59.99673 * 7 6 5 29 29 H 1.09006 * 109.47078 * 299.99849 * 1 2 3 30 30 H 1.08999 * 109.47293 * 59.99639 * 1 2 3 31 31 H 1.08998 * 109.47714 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47029 * 300.00655 * 4 2 1 33 33 H 1.08999 * 109.46560 * 60.00147 * 4 2 1 34 34 H 1.08997 * 109.47340 * 180.02562 * 5 4 2 35 35 H 1.09004 * 109.47114 * 300.00575 * 5 4 2 36 36 H 1.09001 * 109.47610 * 180.02562 * 6 5 4 37 37 H 1.08996 * 109.47228 * 59.99954 * 6 5 4 38 38 H 1.08997 * 109.58656 * 353.41948 * 12 11 9 39 39 H 1.08998 * 109.58627 * 113.84501 * 12 11 9 40 40 H 1.08992 * 109.56948 * 185.55257 * 13 12 11 41 41 H 1.09003 * 109.36206 * 65.49418 * 13 12 11 42 42 H 1.08996 * 109.44767 * 301.21918 * 14 13 12 43 43 H 1.09005 * 109.47302 * 184.92930 * 15 14 13 44 44 H 1.08999 * 109.47142 * 304.92849 * 15 14 13 45 45 H 1.08997 * 109.47207 * 300.00221 * 16 15 14 46 46 H 1.08999 * 109.47050 * 59.99849 * 16 15 14 47 47 H 0.96999 * 120.00121 * 0.02562 * 17 16 15 48 48 H 0.96996 * 120.00077 * 180.02562 * 21 20 18 49 49 H 1.08996 * 109.50023 * 178.68091 * 26 14 13 50 50 H 1.09001 * 109.49805 * 58.58709 * 26 14 13 51 51 H 1.09003 * 109.58718 * 246.15424 * 27 11 9 52 52 H 1.09002 * 109.58562 * 6.57669 * 27 11 9 53 53 H 1.08996 * 109.47309 * 60.00705 * 28 7 6 54 54 H 1.09003 * 109.46687 * 180.02562 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5699 -0.7219 -1.2490 6 6 4.0794 -1.4435 0.0002 7 6 3.5694 -0.7222 1.2496 8 1 3.9331 0.3052 1.2497 9 6 4.0708 -1.4334 2.4800 10 8 3.3724 -2.2580 3.0306 11 7 5.2930 -1.1489 2.9717 12 6 6.1112 -0.0849 2.3742 13 6 7.4820 -0.6545 2.0135 14 6 8.1032 -1.3056 3.2515 15 6 9.4896 -1.8490 2.9002 16 6 10.4178 -0.6863 2.5435 17 7 11.7455 -1.2066 2.2076 18 6 12.7490 -0.3449 1.8530 19 1 12.5618 0.7183 1.8214 20 6 14.0069 -0.8379 1.5343 21 7 14.2349 -2.1337 1.5725 22 14 15.3760 0.3374 1.0513 23 1 15.6334 1.2828 2.1672 24 1 16.6115 -0.4339 0.7617 25 1 14.9717 1.0980 -0.1584 26 6 7.2111 -2.4541 3.7280 27 6 5.8349 -1.9011 4.1115 28 6 2.0394 -0.7217 1.2492 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.6765 -1.7489 -1.2492 33 1 1.6766 -0.2074 -2.1392 34 1 3.9332 -1.2354 -2.1392 35 1 3.9336 0.3056 -1.2487 36 1 5.1694 -1.4436 0.0007 37 1 3.7157 -2.4710 0.0000 38 1 5.6239 0.2887 1.4737 39 1 6.2332 0.7279 3.0902 40 1 8.1296 0.1482 1.6610 41 1 7.3676 -1.4018 1.2283 42 1 8.1944 -0.5635 4.0446 43 1 9.8958 -2.3889 3.7556 44 1 9.4099 -2.5247 2.0486 45 1 10.0118 -0.1464 1.6881 46 1 10.4975 -0.0106 3.3950 47 1 11.9136 -2.1615 2.2357 48 1 15.1139 -2.4782 1.3501 49 1 7.6658 -2.9322 4.5955 50 1 7.0992 -3.1844 2.9266 51 1 5.9339 -1.2395 4.9721 52 1 5.1653 -2.7254 4.3569 53 1 1.6757 -1.7492 1.2490 54 1 1.6761 -0.2075 2.1390 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753573231.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:29 Heat of formation + Delta-G solvation = -86.737950 kcal Electronic energy + Delta-G solvation = -28129.279933 eV Core-core repulsion = 24484.383200 eV Total energy + Delta-G solvation = -3644.896733 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.65540 -39.59365 -38.54789 -36.87206 -35.07596 -33.80619 -32.93460 -32.32319 -31.57053 -29.87227 -27.31750 -26.72527 -25.20460 -24.28461 -23.91098 -22.64517 -22.21826 -21.32900 -20.69552 -19.68420 -19.11635 -18.12413 -17.04793 -16.67598 -16.37693 -16.02467 -15.82162 -15.57548 -15.39477 -15.31685 -15.13582 -14.99547 -14.74347 -14.43371 -14.24227 -14.05419 -13.85285 -13.45701 -13.29688 -13.19125 -13.03402 -12.80499 -12.75117 -12.52728 -12.37618 -12.29358 -12.18344 -12.13514 -12.09096 -11.94521 -11.86679 -11.62680 -11.49708 -11.40521 -11.21364 -11.18245 -10.99050 -10.86639 -10.52807 -9.65148 -8.98273 -7.94492 -5.23581 1.47646 1.51120 1.57264 1.57961 2.01215 2.56930 3.38876 3.41931 3.67361 3.69245 3.77109 3.77781 3.86737 4.08377 4.13338 4.15828 4.19507 4.26242 4.32110 4.38281 4.41756 4.47644 4.53250 4.58953 4.60150 4.64369 4.65424 4.78601 4.80076 4.83269 4.86536 4.90288 4.97633 4.99234 5.06276 5.07370 5.08421 5.15946 5.18236 5.23663 5.28105 5.31707 5.34162 5.39064 5.41313 5.42333 5.49959 5.55652 5.60626 5.62122 6.28075 6.41166 7.15342 7.33459 8.11536 8.33176 9.29111 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.019022 B = 0.002266 C = 0.002102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.654596 B =12355.323693 C =13318.987016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.087 4.087 3 H 0.082 0.918 4 C -0.115 4.115 5 C -0.114 4.114 6 C -0.105 4.105 7 C -0.101 4.101 8 H 0.115 0.885 9 C 0.514 3.486 10 O -0.588 6.588 11 N -0.608 5.608 12 C 0.106 3.894 13 C -0.129 4.129 14 C -0.073 4.073 15 C -0.108 4.108 16 C 0.152 3.848 17 N -0.751 5.751 18 C -0.246 4.246 19 H 0.078 0.922 20 C -0.081 4.081 21 N -0.972 5.972 22 Si 0.976 3.024 23 H -0.277 1.277 24 H -0.296 1.296 25 H -0.275 1.275 26 C -0.121 4.121 27 C 0.112 3.888 28 C -0.092 4.092 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.048 0.952 32 H 0.053 0.947 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.050 0.950 38 H 0.107 0.893 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.059 0.941 42 H 0.081 0.919 43 H 0.054 0.946 44 H 0.051 0.949 45 H 0.029 0.971 46 H 0.018 0.982 47 H 0.371 0.629 48 H 0.251 0.749 49 H 0.081 0.919 50 H 0.054 0.946 51 H 0.080 0.920 52 H 0.074 0.926 53 H 0.051 0.949 54 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.035 6.509 -2.363 28.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.106 4.106 3 H 0.101 0.899 4 C -0.153 4.153 5 C -0.151 4.151 6 C -0.143 4.143 7 C -0.122 4.122 8 H 0.133 0.867 9 C 0.304 3.696 10 O -0.469 6.469 11 N -0.340 5.340 12 C -0.016 4.016 13 C -0.167 4.167 14 C -0.092 4.092 15 C -0.146 4.146 16 C 0.026 3.974 17 N -0.394 5.394 18 C -0.377 4.377 19 H 0.095 0.905 20 C -0.273 4.273 21 N -0.623 5.623 22 Si 0.804 3.196 23 H -0.203 1.203 24 H -0.223 1.223 25 H -0.201 1.201 26 C -0.159 4.159 27 C -0.010 4.010 28 C -0.130 4.130 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.088 0.912 37 H 0.069 0.931 38 H 0.125 0.875 39 H 0.104 0.896 40 H 0.103 0.897 41 H 0.078 0.922 42 H 0.099 0.901 43 H 0.073 0.927 44 H 0.070 0.930 45 H 0.047 0.953 46 H 0.036 0.964 47 H 0.203 0.797 48 H 0.060 0.940 49 H 0.100 0.900 50 H 0.073 0.927 51 H 0.099 0.901 52 H 0.092 0.908 53 H 0.070 0.930 54 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -28.332 6.261 -2.094 29.091 hybrid contribution 1.277 -0.451 0.022 1.355 sum -27.055 5.810 -2.072 27.749 Atomic orbital electron populations 1.21813 0.94739 1.01684 1.02179 1.21131 0.95895 0.99813 0.93713 0.89919 1.21625 0.95352 1.00486 0.97806 1.21516 0.95728 1.01386 0.96491 1.21462 1.00719 0.98935 0.93215 1.21413 0.97716 1.01254 0.91801 0.86669 1.21248 0.80688 0.82099 0.85605 1.90647 1.57093 1.37034 1.62137 1.48289 1.16399 1.36431 1.32928 1.21934 0.90683 0.89025 0.99961 1.21937 0.96026 1.01242 0.97537 1.20999 0.92565 0.97408 0.98266 1.21625 0.94814 0.97487 1.00689 1.20889 0.84293 0.95416 0.96833 1.42672 1.08053 1.06247 1.82400 1.19637 0.90781 0.90736 1.36581 0.90455 1.25637 1.00400 0.97553 1.03668 1.69821 1.22508 1.12759 1.57182 0.85174 0.78254 0.77740 0.78383 1.20308 1.22273 1.20140 1.21887 0.94449 0.97742 1.01805 1.21584 0.94421 0.96511 0.88494 1.21395 0.92338 1.00838 0.98392 0.92648 0.91551 0.93332 0.92850 0.90609 0.91116 0.90295 0.91213 0.93149 0.87485 0.89579 0.89691 0.92200 0.90078 0.92712 0.93022 0.95315 0.96400 0.79722 0.94044 0.89996 0.92733 0.90131 0.90772 0.93044 0.92411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.19 71.98 0.66 -0.94 16 2 C -0.09 -1.02 2.72 -10.79 -0.03 -1.04 16 3 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 4 C -0.12 -1.30 5.20 30.59 0.16 -1.14 16 5 C -0.11 -1.29 5.92 30.59 0.18 -1.11 16 6 C -0.11 -1.61 5.07 30.60 0.16 -1.46 16 7 C -0.10 -1.62 1.69 -11.54 -0.02 -1.64 16 8 H 0.12 1.31 6.30 -2.39 -0.02 1.30 16 9 C 0.51 11.71 6.81 87.66 0.60 12.31 16 10 O -0.59 -18.26 15.52 -3.04 -0.05 -18.30 16 11 N -0.61 -12.04 2.98 -819.74 -2.44 -14.48 16 12 C 0.11 1.58 6.20 86.22 0.53 2.12 16 13 C -0.13 -2.49 5.13 30.53 0.16 -2.33 16 14 C -0.07 -1.63 2.15 -10.77 -0.02 -1.65 16 15 C -0.11 -3.30 4.80 30.59 0.15 -3.15 16 16 C 0.15 5.81 6.02 86.38 0.52 6.33 16 17 N -0.75 -38.48 5.60 -343.46 -1.92 -40.41 16 18 C -0.25 -13.75 9.99 84.03 0.84 -12.91 16 19 H 0.08 4.11 7.83 -2.91 -0.02 4.08 16 20 C -0.08 -4.66 5.50 84.86 0.47 -4.19 16 21 N -0.97 -60.07 13.06 21.65 0.28 -59.78 16 22 Si 0.98 45.98 29.55 68.60 2.03 48.01 16 23 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 24 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 25 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 26 C -0.12 -2.53 5.36 30.67 0.16 -2.37 16 27 C 0.11 2.30 6.42 86.36 0.55 2.86 16 28 C -0.09 -1.51 4.01 30.59 0.12 -1.39 16 29 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 30 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.07 1.07 7.89 -2.39 -0.02 1.05 16 37 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.11 1.18 5.19 -2.39 -0.01 1.16 16 39 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.08 1.68 6.50 -2.39 -0.02 1.66 16 41 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 44 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.03 1.06 6.53 -2.39 -0.02 1.05 16 46 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 47 H 0.37 20.40 7.67 -92.71 -0.71 19.68 16 48 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 49 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 50 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 51 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 52 H 0.07 1.77 7.03 -2.39 -0.02 1.76 16 53 H 0.05 1.08 7.87 -2.39 -0.02 1.06 16 54 H 0.06 1.00 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -70.18 406.03 3.22 -66.97 By element: Atomic # 1 Polarization: 29.59 SS G_CDS: 0.13 Total: 29.72 kcal Atomic # 6 Polarization: -16.91 SS G_CDS: 5.19 Total: -11.72 kcal Atomic # 7 Polarization: -110.59 SS G_CDS: -4.08 Total: -114.67 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: -0.05 Total: -18.30 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -70.18 3.22 -66.97 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753573231.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.772 kcal (2) G-P(sol) polarization free energy of solvation -70.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds