Wall clock time and date at job start Tue Mar 31 2020 15:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47026 * 2 1 4 4 C 1.53001 * 109.47099 * 119.99745 * 2 1 3 5 5 C 1.53005 * 109.47183 * 179.97438 * 4 2 1 6 6 C 1.53007 * 109.47075 * 300.00724 * 5 4 2 7 7 C 1.52994 * 109.47417 * 59.99600 * 6 5 4 8 8 H 1.09004 * 109.47121 * 60.00189 * 7 6 5 9 9 C 1.50702 * 109.47007 * 180.02562 * 7 6 5 10 10 O 1.21277 * 120.00106 * 120.00358 * 9 7 6 11 11 N 1.34779 * 119.99818 * 299.99715 * 9 7 6 12 12 C 1.46499 * 119.99771 * 179.97438 * 11 9 7 13 13 C 1.52995 * 109.47148 * 180.02562 * 12 11 9 14 14 C 1.52997 * 109.47174 * 180.02562 * 13 12 11 15 15 C 1.53046 * 109.46089 * 295.02539 * 14 13 12 16 16 C 1.53189 * 109.31329 * 178.60165 * 15 14 13 17 17 N 1.46930 * 108.76589 * 54.65664 * 16 15 14 18 18 C 1.36934 * 120.63034 * 126.40200 * 17 16 15 19 19 H 1.08005 * 120.00189 * 331.83113 * 18 17 16 20 20 C 1.38812 * 119.99704 * 151.82663 * 18 17 16 21 21 N 1.31619 * 120.00315 * 343.06993 * 20 18 17 22 22 Si 1.86804 * 119.99754 * 163.07090 * 20 18 17 23 23 H 1.48499 * 109.47232 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47050 * 120.00243 * 22 20 18 25 25 H 1.48505 * 109.46975 * 240.00048 * 22 20 18 26 26 C 1.46921 * 118.73791 * 306.38431 * 17 16 15 27 27 C 1.53039 * 109.46044 * 174.97130 * 14 13 12 28 28 C 1.52995 * 109.47241 * 300.00235 * 7 6 5 29 29 H 1.09004 * 109.47026 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47417 * 299.99969 * 1 2 3 31 31 H 1.08992 * 109.47270 * 60.00092 * 1 2 3 32 32 H 1.08997 * 109.47563 * 300.00008 * 4 2 1 33 33 H 1.09003 * 109.46923 * 60.01009 * 4 2 1 34 34 H 1.09004 * 109.46974 * 60.00236 * 5 4 2 35 35 H 1.08992 * 109.47353 * 180.02562 * 5 4 2 36 36 H 1.09004 * 109.46821 * 299.99606 * 6 5 4 37 37 H 1.09001 * 109.46662 * 179.97438 * 6 5 4 38 38 H 0.96995 * 120.00229 * 0.02562 * 11 9 7 39 39 H 1.09004 * 109.47248 * 300.00401 * 12 11 9 40 40 H 1.09010 * 109.46953 * 60.00276 * 12 11 9 41 41 H 1.09004 * 109.47026 * 300.00111 * 13 12 11 42 42 H 1.08992 * 109.47270 * 60.00019 * 13 12 11 43 43 H 1.08999 * 109.46277 * 54.99794 * 14 13 12 44 44 H 1.09001 * 109.49344 * 298.56804 * 15 14 13 45 45 H 1.08995 * 109.49337 * 58.65982 * 15 14 13 46 46 H 1.08997 * 109.59956 * 294.86949 * 16 15 14 47 47 H 1.08998 * 109.69845 * 174.50345 * 16 15 14 48 48 H 0.96998 * 120.00309 * 180.02562 * 21 20 18 49 49 H 1.09006 * 109.58584 * 293.82102 * 26 17 16 50 50 H 1.08999 * 109.70430 * 173.46593 * 26 17 16 51 51 H 1.09003 * 109.50004 * 301.33538 * 27 14 13 52 52 H 1.09000 * 109.49929 * 61.43503 * 27 14 13 53 53 H 1.08998 * 109.47714 * 180.02562 * 28 7 6 54 54 H 1.09004 * 109.47026 * 300.00012 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5700 -0.7218 1.2490 6 6 4.0795 -1.4433 -0.0004 7 6 3.5695 -0.7221 -1.2496 8 1 3.9332 0.3055 -1.2498 9 6 4.0708 -1.4332 -2.4800 10 8 3.2821 -1.8938 -3.2779 11 7 5.3958 -1.5573 -2.6938 12 6 5.8831 -2.2491 -3.8897 13 6 7.4131 -2.2505 -3.8901 14 6 7.9221 -2.9724 -5.1393 15 6 7.5151 -4.4465 -5.0778 16 6 7.9960 -5.1583 -6.3462 17 7 9.4411 -4.9371 -6.4933 18 6 10.2969 -5.9952 -6.6458 19 1 10.0453 -6.9580 -6.2262 20 6 11.4876 -5.8302 -7.3399 21 7 11.6522 -4.7874 -8.1259 22 14 12.8565 -7.0882 -7.1582 23 1 12.4246 -8.1584 -6.2237 24 1 13.1613 -7.6831 -8.4843 25 1 14.0718 -6.4235 -6.6228 26 6 9.9504 -3.5591 -6.4740 27 6 9.4473 -2.8651 -5.2043 28 6 2.0395 -0.7215 -1.2492 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.6767 -0.2074 2.1393 33 1 1.6767 -1.7489 1.2492 34 1 3.9337 0.3058 1.2487 35 1 3.9333 -1.2359 2.1387 36 1 3.7158 -2.4709 -0.0001 37 1 5.1695 -1.4433 -0.0008 38 1 6.0266 -1.1892 -2.0555 39 1 5.5191 -3.2765 -3.8888 40 1 5.5197 -1.7356 -4.7799 41 1 7.7774 -1.2231 -3.8908 42 1 7.7762 -2.7641 -3.0000 43 1 7.4875 -2.5126 -6.0269 44 1 7.9698 -4.9131 -4.2039 45 1 6.4300 -4.5217 -5.0077 46 1 7.4742 -4.7529 -7.2130 47 1 7.7962 -6.2268 -6.2661 48 1 12.4841 -4.6723 -8.6112 49 1 9.5879 -3.0233 -7.3514 50 1 11.0403 -3.5701 -6.4770 51 1 9.7376 -1.8146 -5.2245 52 1 9.8836 -3.3469 -4.3293 53 1 1.6761 -0.2081 -2.1394 54 1 1.6758 -1.7491 -1.2490 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753597323.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:05 Heat of formation + Delta-G solvation = -85.266637 kcal Electronic energy + Delta-G solvation = -27576.893841 eV Core-core repulsion = 23932.060909 eV Total energy + Delta-G solvation = -3644.832932 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.25450 -39.63053 -38.84680 -36.69546 -35.11185 -33.73550 -32.93170 -31.95742 -31.53909 -29.93272 -27.33750 -26.88961 -25.08169 -24.09713 -23.39528 -22.58267 -22.15432 -21.13909 -20.65024 -20.50487 -18.70558 -17.90148 -17.07420 -16.82722 -16.62899 -16.00377 -15.70827 -15.51664 -15.30113 -15.29740 -15.00526 -14.95371 -14.75753 -14.32637 -14.17701 -13.97989 -13.80310 -13.48640 -13.27859 -13.02843 -12.94826 -12.83214 -12.70396 -12.57738 -12.39564 -12.24923 -12.15096 -12.09423 -11.92104 -11.83806 -11.81602 -11.53303 -11.43236 -11.33316 -11.09811 -10.99179 -10.95539 -10.60263 -10.52874 -10.04704 -8.67060 -7.87493 -5.33244 1.45038 1.46438 1.57549 1.65433 2.22898 2.50727 3.26454 3.62470 3.71058 3.72990 3.77439 3.84968 3.93005 4.11688 4.17518 4.18623 4.28657 4.32714 4.40725 4.44588 4.54771 4.57170 4.59160 4.65669 4.69541 4.74922 4.77613 4.80476 4.88311 4.90128 4.99649 5.03123 5.06143 5.11117 5.12230 5.17429 5.21483 5.26798 5.31579 5.35738 5.35959 5.39884 5.40207 5.43876 5.46650 5.49409 5.56430 5.62415 5.67134 5.80938 6.39496 6.59339 7.15335 7.29071 7.87215 8.38990 9.18671 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.034241 B = 0.001890 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.538790 B =14814.510885 C =14989.436884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.088 4.088 3 H 0.081 0.919 4 C -0.117 4.117 5 C -0.114 4.114 6 C -0.108 4.108 7 C -0.098 4.098 8 H 0.119 0.881 9 C 0.508 3.492 10 O -0.591 6.591 11 N -0.716 5.716 12 C 0.122 3.878 13 C -0.107 4.107 14 C -0.071 4.071 15 C -0.117 4.117 16 C 0.137 3.863 17 N -0.611 5.611 18 C -0.262 4.262 19 H 0.064 0.936 20 C -0.053 4.053 21 N -0.936 5.936 22 Si 0.968 3.032 23 H -0.267 1.267 24 H -0.293 1.293 25 H -0.288 1.288 26 C 0.174 3.826 27 C -0.120 4.120 28 C -0.092 4.092 29 H 0.047 0.953 30 H 0.066 0.934 31 H 0.051 0.949 32 H 0.074 0.926 33 H 0.053 0.947 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.053 0.947 37 H 0.083 0.917 38 H 0.416 0.584 39 H 0.056 0.944 40 H 0.052 0.948 41 H 0.084 0.916 42 H 0.079 0.921 43 H 0.057 0.943 44 H 0.057 0.943 45 H 0.072 0.928 46 H 0.007 0.993 47 H 0.048 0.952 48 H 0.250 0.750 49 H -0.009 1.009 50 H 0.051 0.949 51 H 0.070 0.930 52 H 0.053 0.947 53 H 0.052 0.948 54 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.184 13.624 22.440 31.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.106 4.106 3 H 0.099 0.901 4 C -0.154 4.154 5 C -0.151 4.151 6 C -0.146 4.146 7 C -0.119 4.119 8 H 0.137 0.863 9 C 0.296 3.704 10 O -0.471 6.471 11 N -0.368 5.368 12 C -0.002 4.002 13 C -0.145 4.145 14 C -0.090 4.090 15 C -0.156 4.156 16 C 0.012 3.988 17 N -0.335 5.335 18 C -0.392 4.392 19 H 0.082 0.918 20 C -0.248 4.248 21 N -0.583 5.583 22 Si 0.796 3.204 23 H -0.191 1.191 24 H -0.220 1.220 25 H -0.214 1.214 26 C 0.048 3.952 27 C -0.159 4.159 28 C -0.130 4.130 29 H 0.067 0.933 30 H 0.085 0.915 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.072 0.928 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.071 0.929 37 H 0.102 0.898 38 H 0.253 0.747 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.103 0.897 42 H 0.097 0.903 43 H 0.075 0.925 44 H 0.076 0.924 45 H 0.090 0.910 46 H 0.025 0.975 47 H 0.067 0.933 48 H 0.059 0.941 49 H 0.009 0.991 50 H 0.070 0.930 51 H 0.089 0.911 52 H 0.072 0.928 53 H 0.071 0.929 54 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -17.608 13.306 21.777 31.006 hybrid contribution 1.102 -0.768 -0.732 1.530 sum -16.506 12.538 21.045 29.539 Atomic orbital electron populations 1.21824 0.95032 1.01652 1.02043 1.21136 0.95729 0.99818 0.93912 0.90086 1.21639 0.95885 1.00413 0.97475 1.21524 0.95287 1.01456 0.96876 1.21548 1.01368 0.98881 0.92791 1.21379 0.97437 1.01323 0.91781 0.86323 1.21348 0.82132 0.79102 0.87794 1.90688 1.56561 1.50693 1.49144 1.45983 1.07089 1.58229 1.25547 1.21315 0.94658 0.96761 0.87464 1.21688 0.92616 1.01828 0.98320 1.20885 0.95140 0.95187 0.97763 1.21963 0.99907 0.95702 0.97979 1.21072 0.84317 0.98046 0.95356 1.44346 1.01713 1.02642 1.84799 1.19555 1.00301 0.92100 1.27268 0.91821 1.25823 1.02401 1.00043 0.96557 1.70200 1.25764 1.32281 1.30023 0.85204 0.79266 0.78794 0.77164 1.19130 1.21992 1.21415 1.20620 0.98102 0.83495 0.92981 1.22015 0.95528 0.99800 0.98554 1.21365 0.92896 1.00627 0.98143 0.93336 0.91482 0.92996 0.90721 0.92812 0.90389 0.90699 0.92851 0.89841 0.74737 0.92548 0.92927 0.89727 0.90280 0.92454 0.92420 0.90970 0.97481 0.93337 0.94119 0.99108 0.93011 0.91106 0.92780 0.92910 0.93338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.19 71.98 0.66 -0.99 16 2 C -0.09 -0.97 2.72 -10.80 -0.03 -1.00 16 3 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 4 C -0.12 -1.09 5.20 30.60 0.16 -0.93 16 5 C -0.11 -0.88 5.92 30.60 0.18 -0.70 16 6 C -0.11 -1.15 5.10 30.59 0.16 -1.00 16 7 C -0.10 -1.39 2.53 -11.54 -0.03 -1.42 16 8 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 9 C 0.51 11.14 7.15 87.66 0.63 11.76 16 10 O -0.59 -18.91 15.98 -3.02 -0.05 -18.96 16 11 N -0.72 -12.86 5.45 -463.05 -2.52 -15.38 16 12 C 0.12 2.75 5.43 86.38 0.47 3.22 16 13 C -0.11 -2.26 4.80 30.59 0.15 -2.11 16 14 C -0.07 -2.13 2.15 -10.77 -0.02 -2.16 16 15 C -0.12 -3.88 5.14 30.67 0.16 -3.73 16 16 C 0.14 5.93 6.52 86.36 0.56 6.49 16 17 N -0.61 -31.54 2.99 -699.10 -2.09 -33.63 16 18 C -0.26 -14.79 9.58 84.03 0.81 -13.98 16 19 H 0.06 3.52 7.89 -2.91 -0.02 3.50 16 20 C -0.05 -3.03 4.92 84.86 0.42 -2.61 16 21 N -0.94 -56.45 11.19 21.65 0.24 -56.21 16 22 Si 0.97 45.50 29.59 68.60 2.03 47.53 16 23 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 24 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 25 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 26 C 0.17 8.47 5.30 86.36 0.46 8.93 16 27 C -0.12 -4.28 5.36 30.67 0.16 -4.12 16 28 C -0.09 -1.52 3.77 30.59 0.12 -1.40 16 29 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 35 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.08 0.64 7.56 -2.39 -0.02 0.62 16 38 H 0.42 4.62 7.89 -92.71 -0.73 3.88 16 39 H 0.06 1.46 6.54 -2.39 -0.02 1.44 16 40 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 41 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 45 H 0.07 2.12 6.50 -2.39 -0.02 2.10 16 46 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 47 H 0.05 2.07 7.93 -2.39 -0.02 2.05 16 48 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 49 H -0.01 -0.48 8.14 -2.38 -0.02 -0.50 16 50 H 0.05 2.86 6.07 -2.39 -0.01 2.84 16 51 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 52 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 53 H 0.05 1.02 8.10 -2.39 -0.02 1.01 16 54 H 0.05 0.99 8.10 -2.39 -0.02 0.98 16 Total: -1.00 -71.58 406.90 2.71 -68.87 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: 0.11 Total: 13.52 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: 5.00 Total: -5.74 kcal Atomic # 7 Polarization: -100.85 SS G_CDS: -4.37 Total: -105.22 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: -0.05 Total: -18.96 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -71.58 2.71 -68.87 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753597323.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.400 kcal (2) G-P(sol) polarization free energy of solvation -71.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds