Wall clock time and date at job start Tue Mar 31 2020 15:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47341 * 2 1 4 4 C 1.53000 * 109.47434 * 239.99863 * 2 1 3 5 5 C 1.52998 * 109.47353 * 180.02562 * 4 2 1 6 6 C 1.52994 * 109.47054 * 59.99744 * 5 4 2 7 7 C 1.52998 * 109.47513 * 300.00043 * 6 5 4 8 8 H 1.08999 * 109.47181 * 300.00621 * 7 6 5 9 9 C 1.50698 * 109.47656 * 179.97438 * 7 6 5 10 10 O 1.21283 * 120.00476 * 240.00705 * 9 7 6 11 11 N 1.34778 * 119.99657 * 59.99678 * 9 7 6 12 12 C 1.46495 * 119.99930 * 180.02562 * 11 9 7 13 13 C 1.53007 * 109.47389 * 180.02562 * 12 11 9 14 14 C 1.52994 * 109.47268 * 179.97438 * 13 12 11 15 15 C 1.53032 * 109.46195 * 295.06822 * 14 13 12 16 16 C 1.53192 * 109.31481 * 178.61555 * 15 14 13 17 17 N 1.46932 * 108.77529 * 54.63281 * 16 15 14 18 18 C 1.36932 * 120.62937 * 126.41605 * 17 16 15 19 19 H 1.08004 * 120.00402 * 332.60381 * 18 17 16 20 20 C 1.38811 * 120.00072 * 152.60449 * 18 17 16 21 21 N 1.31624 * 120.00373 * 159.35713 * 20 18 17 22 22 Si 1.86803 * 119.99942 * 339.36350 * 20 18 17 23 23 H 1.48502 * 109.46990 * 92.90854 * 22 20 18 24 24 H 1.48501 * 109.47288 * 212.90852 * 22 20 18 25 25 H 1.48503 * 109.47007 * 332.90669 * 22 20 18 26 26 C 1.46929 * 118.73829 * 306.39295 * 17 16 15 27 27 C 1.53041 * 109.45794 * 174.99775 * 14 13 12 28 28 C 1.52994 * 109.46712 * 119.99767 * 2 1 3 29 29 H 1.08995 * 109.47475 * 300.00629 * 1 2 3 30 30 H 1.09009 * 109.46883 * 60.00038 * 1 2 3 31 31 H 1.08999 * 109.47139 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46969 * 300.00365 * 4 2 1 33 33 H 1.09002 * 109.46979 * 59.99814 * 4 2 1 34 34 H 1.08997 * 109.47002 * 180.02562 * 5 4 2 35 35 H 1.09007 * 109.46902 * 300.00319 * 5 4 2 36 36 H 1.08999 * 109.47404 * 60.00526 * 6 5 4 37 37 H 1.09001 * 109.47326 * 180.02562 * 6 5 4 38 38 H 0.97001 * 119.99838 * 0.02562 * 11 9 7 39 39 H 1.09006 * 109.47398 * 300.00170 * 12 11 9 40 40 H 1.08999 * 109.47390 * 60.00716 * 12 11 9 41 41 H 1.08997 * 109.46575 * 300.00241 * 13 12 11 42 42 H 1.08999 * 109.46797 * 59.99707 * 13 12 11 43 43 H 1.08999 * 109.46195 * 55.02973 * 14 13 12 44 44 H 1.09000 * 109.49894 * 298.56208 * 15 14 13 45 45 H 1.09001 * 109.50346 * 58.66468 * 15 14 13 46 46 H 1.09002 * 109.58771 * 294.84575 * 16 15 14 47 47 H 1.08998 * 109.59389 * 174.42103 * 16 15 14 48 48 H 0.97000 * 120.00242 * 179.97438 * 21 20 18 49 49 H 1.08995 * 109.58558 * 293.81989 * 26 17 16 50 50 H 1.09001 * 109.58578 * 173.39687 * 26 17 16 51 51 H 1.09005 * 109.50082 * 301.33184 * 27 14 13 52 52 H 1.08997 * 109.50127 * 61.40301 * 27 14 13 53 53 H 1.08997 * 109.47565 * 299.99972 * 28 2 1 54 54 H 1.08999 * 109.47404 * 60.00416 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5701 -0.7218 -1.2489 6 6 4.0795 -1.4433 0.0004 7 6 3.5695 -0.7221 1.2496 8 1 3.9331 0.3055 1.2498 9 6 4.0708 -1.4331 2.4801 10 8 3.2820 -1.8938 3.2780 11 7 5.3957 -1.5573 2.6939 12 6 5.8830 -2.2489 3.8898 13 6 7.4131 -2.2494 3.8909 14 6 7.9220 -2.9712 5.1402 15 6 7.5150 -2.1819 6.3864 16 6 7.9961 -2.9252 7.6365 17 7 9.4412 -3.1634 7.5183 18 6 10.2970 -2.7674 8.5111 19 1 10.0400 -1.9307 9.1439 20 6 11.4952 -3.4411 8.7043 21 7 12.4836 -2.8554 9.3466 22 14 11.7049 -5.1792 8.0525 23 1 12.3093 -5.1299 6.6969 24 1 12.5933 -5.9454 8.9630 25 1 10.3790 -5.8439 7.9796 26 6 9.9503 -3.8350 6.3147 27 6 9.4472 -3.0814 5.0795 28 6 2.0399 -0.7212 1.2493 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6767 -1.7489 -1.2492 33 1 1.6767 -0.2075 -2.1392 34 1 3.9334 -1.2353 -2.1390 35 1 3.9338 0.3058 -1.2486 36 1 3.7159 -2.4709 0.0002 37 1 5.1695 -1.4433 0.0009 38 1 6.0265 -1.1886 2.0559 39 1 5.5196 -1.7354 4.7800 40 1 5.5191 -3.2764 3.8890 41 1 7.7767 -2.7626 3.0007 42 1 7.7767 -1.2219 3.8919 43 1 7.4874 -3.9698 5.1850 44 1 7.9696 -1.1917 6.3545 45 1 6.4298 -2.0837 6.4167 46 1 7.4741 -3.8786 7.7183 47 1 7.7967 -2.3202 8.5210 48 1 13.3207 -3.3264 9.4819 49 1 9.5877 -4.8626 6.2887 50 1 11.0402 -3.8302 6.3270 51 1 9.7374 -3.6236 4.1795 52 1 9.8836 -2.0828 5.0592 53 1 1.6766 -0.2074 2.1392 54 1 1.6766 -1.7489 1.2493 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753597325.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:14 Heat of formation + Delta-G solvation = -81.711893 kcal Electronic energy + Delta-G solvation = -27640.589439 eV Core-core repulsion = 23995.910652 eV Total energy + Delta-G solvation = -3644.678787 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.25826 -39.80658 -38.87689 -36.77143 -35.12264 -33.80187 -33.21915 -31.99430 -31.86224 -30.18147 -27.33571 -26.80966 -25.07736 -24.41675 -23.36240 -22.58605 -22.36593 -21.21514 -20.71879 -20.51118 -18.78375 -17.92760 -17.23115 -17.02391 -16.61712 -15.99253 -15.93482 -15.61031 -15.37556 -15.27728 -15.14190 -14.92870 -14.79862 -14.52666 -14.33646 -14.15683 -13.94241 -13.52049 -13.39389 -13.28981 -13.14420 -12.89597 -12.70903 -12.47901 -12.40221 -12.27622 -12.16923 -12.11254 -12.01769 -11.84814 -11.65259 -11.56335 -11.44300 -11.33693 -11.18921 -11.06325 -10.96818 -10.70102 -10.55758 -10.04265 -8.91672 -8.17087 -5.47944 1.28143 1.40327 1.49695 1.65353 2.22790 2.40931 3.06385 3.36813 3.62763 3.71338 3.76943 3.78283 3.90016 4.04077 4.16182 4.17862 4.24208 4.31349 4.36627 4.40654 4.42474 4.54585 4.57170 4.61053 4.61341 4.66571 4.69670 4.75751 4.79635 4.87827 4.91789 4.98877 4.99819 5.01164 5.06588 5.11603 5.16959 5.20754 5.24884 5.28094 5.30116 5.31179 5.34951 5.36232 5.39344 5.43552 5.49763 5.61879 5.63229 5.87330 6.12198 6.58942 6.93054 7.28837 7.63638 8.04348 9.03033 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.035839 B = 0.001966 C = 0.001918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.086376 B =14239.455411 C =14593.297213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.088 4.088 3 H 0.079 0.921 4 C -0.116 4.116 5 C -0.115 4.115 6 C -0.107 4.107 7 C -0.099 4.099 8 H 0.117 0.883 9 C 0.509 3.491 10 O -0.590 6.590 11 N -0.717 5.717 12 C 0.121 3.879 13 C -0.108 4.108 14 C -0.072 4.072 15 C -0.121 4.121 16 C 0.140 3.860 17 N -0.621 5.621 18 C -0.248 4.248 19 H 0.048 0.952 20 C -0.038 4.038 21 N -0.958 5.958 22 Si 0.950 3.050 23 H -0.271 1.271 24 H -0.311 1.311 25 H -0.265 1.265 26 C 0.116 3.884 27 C -0.118 4.118 28 C -0.092 4.092 29 H 0.050 0.950 30 H 0.066 0.934 31 H 0.048 0.952 32 H 0.054 0.946 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.054 0.946 37 H 0.084 0.916 38 H 0.415 0.585 39 H 0.056 0.944 40 H 0.056 0.944 41 H 0.088 0.912 42 H 0.075 0.925 43 H 0.070 0.930 44 H 0.052 0.948 45 H 0.077 0.923 46 H 0.030 0.970 47 H 0.048 0.952 48 H 0.261 0.739 49 H 0.030 0.970 50 H 0.047 0.953 51 H 0.084 0.916 52 H 0.055 0.945 53 H 0.051 0.949 54 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.388 5.340 -27.766 34.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.107 4.107 3 H 0.098 0.902 4 C -0.154 4.154 5 C -0.152 4.152 6 C -0.145 4.145 7 C -0.120 4.120 8 H 0.135 0.865 9 C 0.297 3.703 10 O -0.470 6.470 11 N -0.369 5.369 12 C -0.003 4.003 13 C -0.146 4.146 14 C -0.091 4.091 15 C -0.160 4.160 16 C 0.015 3.985 17 N -0.346 5.346 18 C -0.378 4.378 19 H 0.066 0.934 20 C -0.232 4.232 21 N -0.605 5.605 22 Si 0.779 3.221 23 H -0.198 1.198 24 H -0.240 1.240 25 H -0.190 1.190 26 C -0.008 4.008 27 C -0.157 4.157 28 C -0.130 4.130 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.073 0.927 37 H 0.102 0.898 38 H 0.252 0.748 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.107 0.893 42 H 0.094 0.906 43 H 0.089 0.911 44 H 0.071 0.929 45 H 0.095 0.905 46 H 0.048 0.952 47 H 0.067 0.933 48 H 0.070 0.930 49 H 0.048 0.952 50 H 0.065 0.935 51 H 0.102 0.898 52 H 0.074 0.926 53 H 0.070 0.930 54 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -20.806 4.998 -27.127 34.551 hybrid contribution 0.825 -0.719 0.625 1.260 sum -19.981 4.279 -26.503 33.466 Atomic orbital electron populations 1.21826 0.95042 1.01681 1.02010 1.21138 0.95727 0.99791 0.94001 0.90239 1.21635 0.95909 1.00435 0.97403 1.21524 0.95267 1.01436 0.96975 1.21537 1.01385 0.98893 0.92650 1.21375 0.97425 1.01295 0.91943 0.86539 1.21312 0.82173 0.79079 0.87757 1.90690 1.56564 1.50682 1.49098 1.45984 1.07046 1.58261 1.25615 1.21336 0.94642 0.96771 0.87550 1.21694 0.92654 1.02007 0.98253 1.20914 0.94742 0.99329 0.94132 1.21993 1.00319 0.98828 0.94837 1.21121 0.82667 0.97479 0.97248 1.44507 1.02972 1.69944 1.17204 1.18876 0.99167 1.09305 1.10450 0.93384 1.25923 0.96187 1.01720 0.99391 1.69973 1.04113 1.38332 1.48034 0.85863 0.77426 0.81950 0.76886 1.19761 1.24038 1.18963 1.21429 0.97358 0.94805 0.87238 1.21936 0.95918 1.00689 0.97198 1.21354 0.92939 1.00650 0.98074 0.93048 0.91533 0.93247 0.92699 0.90802 0.90617 0.90544 0.92685 0.89766 0.74755 0.92591 0.92592 0.89342 0.90596 0.91149 0.92886 0.90465 0.95205 0.93305 0.92984 0.95239 0.93495 0.89787 0.92634 0.93010 0.93211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.19 71.98 0.66 -0.93 16 2 C -0.09 -0.94 2.72 -10.80 -0.03 -0.97 16 3 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 4 C -0.12 -1.00 5.20 30.59 0.16 -0.84 16 5 C -0.11 -0.79 5.92 30.59 0.18 -0.61 16 6 C -0.11 -1.01 5.10 30.59 0.16 -0.85 16 7 C -0.10 -1.32 2.53 -11.55 -0.03 -1.35 16 8 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 9 C 0.51 10.49 7.15 87.66 0.63 11.12 16 10 O -0.59 -18.07 15.98 -3.04 -0.05 -18.12 16 11 N -0.72 -11.69 5.45 -463.05 -2.52 -14.22 16 12 C 0.12 2.43 5.43 86.38 0.47 2.90 16 13 C -0.11 -1.98 4.80 30.59 0.15 -1.84 16 14 C -0.07 -1.88 2.15 -10.77 -0.02 -1.90 16 15 C -0.12 -3.68 5.14 30.67 0.16 -3.52 16 16 C 0.14 5.49 6.52 86.36 0.56 6.05 16 17 N -0.62 -29.66 2.77 -699.08 -1.94 -31.59 16 18 C -0.25 -14.42 10.03 84.03 0.84 -13.57 16 19 H 0.05 3.06 8.06 -2.91 -0.02 3.04 16 20 C -0.04 -2.25 5.23 84.86 0.44 -1.80 16 21 N -0.96 -61.12 13.97 21.65 0.30 -60.82 16 22 Si 0.95 47.33 24.34 68.60 1.67 49.00 16 23 H -0.27 -12.59 6.62 99.48 0.66 -11.93 16 24 H -0.31 -15.76 7.11 99.48 0.71 -15.06 16 25 H -0.26 -12.76 6.64 99.48 0.66 -12.10 16 26 C 0.12 4.86 4.20 86.36 0.36 5.23 16 27 C -0.12 -3.67 5.36 30.67 0.16 -3.51 16 28 C -0.09 -1.45 3.77 30.58 0.12 -1.33 16 29 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.07 0.55 8.14 -2.38 -0.02 0.53 16 31 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 35 H 0.08 0.39 8.14 -2.38 -0.02 0.37 16 36 H 0.05 0.68 8.14 -2.39 -0.02 0.67 16 37 H 0.08 0.52 7.56 -2.39 -0.02 0.50 16 38 H 0.42 4.01 7.89 -92.71 -0.73 3.28 16 39 H 0.06 1.33 6.53 -2.38 -0.02 1.31 16 40 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 45 H 0.08 2.04 6.50 -2.39 -0.02 2.02 16 46 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 47 H 0.05 2.00 7.93 -2.39 -0.02 1.98 16 48 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 49 H 0.03 1.20 7.07 -2.39 -0.02 1.19 16 50 H 0.05 2.18 4.50 -2.39 -0.01 2.17 16 51 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 52 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 53 H 0.05 0.98 8.10 -2.39 -0.02 0.96 16 54 H 0.05 0.97 8.10 -2.39 -0.02 0.95 16 Total: -1.00 -74.31 400.44 2.45 -71.86 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: 0.02 Total: 11.60 kcal Atomic # 6 Polarization: -12.69 SS G_CDS: 4.97 Total: -7.72 kcal Atomic # 7 Polarization: -102.47 SS G_CDS: -4.16 Total: -106.63 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: -0.05 Total: -18.12 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 1.67 Total: 49.00 kcal Total: -74.31 2.45 -71.86 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753597325.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.851 kcal (2) G-P(sol) polarization free energy of solvation -74.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds