Wall clock time and date at job start Tue Mar 31 2020 15:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.47252 * 2 1 4 4 C 1.53000 * 109.47483 * 120.00058 * 2 1 3 5 5 C 1.53000 * 109.47483 * 179.97438 * 4 2 1 6 6 C 1.53007 * 109.46579 * 300.00177 * 5 4 2 7 7 H 1.08996 * 109.47089 * 299.99713 * 6 5 4 8 8 C 1.50704 * 109.46523 * 179.97438 * 6 5 4 9 9 O 1.21283 * 119.99784 * 239.99649 * 8 6 5 10 10 N 1.34770 * 120.00149 * 59.99928 * 8 6 5 11 11 C 1.46501 * 119.99932 * 179.97438 * 10 8 6 12 12 C 1.53005 * 109.46992 * 179.97438 * 11 10 8 13 13 C 1.53001 * 109.47056 * 179.97438 * 12 11 10 14 14 C 1.53035 * 109.46354 * 295.02968 * 13 12 11 15 15 C 1.53188 * 109.31307 * 178.59719 * 14 13 12 16 16 N 1.46926 * 108.76289 * 54.65867 * 15 14 13 17 17 C 1.36939 * 120.62937 * 126.40596 * 16 15 14 18 18 H 1.07998 * 120.00006 * 207.65977 * 17 16 15 19 19 C 1.38817 * 120.00086 * 27.66249 * 17 16 15 20 20 N 1.31617 * 119.99708 * 17.36865 * 19 17 16 21 21 Si 1.86801 * 119.99957 * 197.36510 * 19 17 16 22 22 H 1.48504 * 109.46683 * 89.99937 * 21 19 17 23 23 H 1.48500 * 109.47311 * 210.00048 * 21 19 17 24 24 H 1.48499 * 109.47122 * 330.00454 * 21 19 17 25 25 C 1.46926 * 118.74028 * 306.37845 * 16 15 14 26 26 C 1.53042 * 109.46069 * 174.97433 * 13 12 11 27 27 C 1.52992 * 109.47327 * 60.00216 * 6 5 4 28 28 C 1.53000 * 109.47114 * 299.99456 * 27 6 5 29 29 H 1.09001 * 109.46561 * 299.99950 * 1 2 3 30 30 H 1.08998 * 109.47269 * 59.99505 * 1 2 3 31 31 H 1.08996 * 109.47175 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.46924 * 59.99741 * 4 2 1 33 33 H 1.08998 * 109.46849 * 300.00252 * 4 2 1 34 34 H 1.08998 * 109.47269 * 180.02562 * 5 4 2 35 35 H 1.08996 * 109.47175 * 59.99837 * 5 4 2 36 36 H 0.97006 * 119.99936 * 359.97438 * 10 8 6 37 37 H 1.08998 * 109.47662 * 300.00097 * 11 10 8 38 38 H 1.08996 * 109.46750 * 60.00561 * 11 10 8 39 39 H 1.08997 * 109.47645 * 300.00425 * 12 11 10 40 40 H 1.09006 * 109.46894 * 60.00249 * 12 11 10 41 41 H 1.08998 * 109.45381 * 55.00704 * 13 12 11 42 42 H 1.08990 * 109.50099 * 298.56710 * 14 13 12 43 43 H 1.08999 * 109.49545 * 58.66317 * 14 13 12 44 44 H 1.09003 * 109.60286 * 294.87339 * 15 14 13 45 45 H 1.09003 * 109.59118 * 174.44075 * 15 14 13 46 46 H 0.97006 * 119.99250 * 179.97438 * 20 19 17 47 47 H 1.08995 * 109.58965 * 293.82565 * 25 16 15 48 48 H 1.08994 * 109.58482 * 173.39387 * 25 16 15 49 49 H 1.09005 * 109.49615 * 301.34482 * 26 13 12 50 50 H 1.08995 * 109.49601 * 61.43347 * 26 13 12 51 51 H 1.08996 * 109.47447 * 59.99716 * 27 6 5 52 52 H 1.09001 * 109.47186 * 180.02562 * 27 6 5 53 53 H 1.08997 * 109.47545 * 180.02562 * 28 27 6 54 54 H 1.09006 * 109.47252 * 300.00321 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5701 -0.7218 1.2489 6 6 4.0795 -1.4434 -0.0005 7 1 3.7158 -2.4709 -0.0002 8 6 5.5865 -1.4434 -0.0011 9 8 6.1925 -0.9185 -0.9112 10 7 6.2608 -2.0267 1.0095 11 6 7.7258 -2.0272 1.0086 12 6 8.2364 -2.7474 2.2582 13 6 9.7664 -2.7485 2.2569 14 6 10.2747 -3.5771 1.0750 15 6 11.8062 -3.5469 1.0566 16 7 12.3035 -3.9940 2.3649 17 6 13.2115 -5.0152 2.4543 18 1 13.2451 -5.6318 3.3404 19 6 14.0888 -5.2577 1.4062 20 7 14.2943 -4.3328 0.4927 21 14 14.9776 -6.8968 1.2924 22 1 14.1591 -7.8496 0.5002 23 1 16.2917 -6.7023 0.6288 24 1 15.1882 -7.4415 2.6578 25 6 11.8085 -3.3243 3.5753 26 6 10.2769 -3.3566 3.5652 27 6 3.5695 -0.7221 -1.2496 28 6 2.0395 -0.7216 -1.2493 29 1 -0.3632 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.6767 -1.7490 1.2492 33 1 1.6767 -0.2074 2.1392 34 1 3.9335 -1.2360 2.1386 35 1 3.9338 0.3057 1.2486 36 1 5.7761 -2.4462 1.7376 37 1 8.0885 -2.5415 0.1187 38 1 8.0894 -0.9996 1.0080 39 1 7.8737 -2.2328 3.1480 40 1 7.8727 -3.7750 2.2594 41 1 10.1300 -1.7250 2.1661 42 1 9.9322 -4.6066 1.1784 43 1 9.8916 -3.1573 0.1449 44 1 12.1497 -2.5307 0.8630 45 1 12.1756 -4.2142 0.2778 46 1 14.9076 -4.5022 -0.2395 47 1 12.1520 -2.2899 3.5871 48 1 12.1791 -3.8447 4.4583 49 1 9.8953 -2.7799 4.4078 50 1 9.9343 -4.3882 3.6449 51 1 3.9332 0.3053 -1.2499 52 1 3.9320 -1.2365 -2.1397 53 1 1.6761 -0.2081 -2.1394 54 1 1.6757 -1.7492 -1.2491 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753599214.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:30:29 Heat of formation + Delta-G solvation = -85.324084 kcal Electronic energy + Delta-G solvation = -27553.032529 eV Core-core repulsion = 23908.197106 eV Total energy + Delta-G solvation = -3644.835423 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.25068 -39.62652 -38.87946 -36.70271 -35.11001 -33.78352 -32.95997 -31.66125 -31.48918 -30.13354 -27.89616 -26.65427 -24.63070 -23.77717 -23.53513 -22.92520 -22.13202 -21.14109 -20.66660 -20.48323 -18.70520 -18.08281 -17.17125 -16.77924 -16.65538 -15.89900 -15.75422 -15.32388 -15.25543 -15.18262 -15.08972 -14.94309 -14.77749 -14.43381 -14.13519 -13.93277 -13.84434 -13.44635 -13.12473 -13.07472 -13.04601 -12.91219 -12.72599 -12.57428 -12.41425 -12.28193 -12.17470 -11.99649 -11.89828 -11.88493 -11.78150 -11.59425 -11.50775 -11.24701 -11.08176 -10.99408 -10.90367 -10.61820 -10.53463 -10.05835 -8.68065 -7.87266 -5.32678 1.45171 1.46742 1.55734 1.64745 2.22323 2.50711 3.26581 3.61676 3.71138 3.73489 3.77867 3.84269 3.95222 4.10977 4.15858 4.18644 4.27320 4.33054 4.43158 4.45559 4.52560 4.57838 4.59424 4.65193 4.68822 4.73888 4.79311 4.85608 4.89435 4.95505 5.01441 5.03914 5.04568 5.08254 5.11638 5.15662 5.21924 5.27638 5.30382 5.34000 5.35107 5.42004 5.43857 5.44904 5.46945 5.49587 5.56701 5.63049 5.66728 5.79384 6.38973 6.59086 7.14677 7.29116 7.87698 8.39147 9.18745 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.030590 B = 0.001929 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.101700 B =14508.532217 C =14951.858638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.097 4.097 3 H 0.060 0.940 4 C -0.108 4.108 5 C -0.107 4.107 6 C -0.097 4.097 7 H 0.118 0.882 8 C 0.507 3.493 9 O -0.592 6.592 10 N -0.715 5.715 11 C 0.120 3.880 12 C -0.105 4.105 13 C -0.071 4.071 14 C -0.124 4.124 15 C 0.175 3.825 16 N -0.611 5.611 17 C -0.261 4.261 18 H 0.068 0.932 19 C -0.056 4.056 20 N -0.938 5.938 21 Si 0.968 3.032 22 H -0.286 1.286 23 H -0.296 1.296 24 H -0.266 1.266 25 C 0.136 3.864 26 C -0.112 4.112 27 C -0.100 4.100 28 C -0.108 4.108 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.054 0.946 36 H 0.416 0.584 37 H 0.049 0.951 38 H 0.052 0.948 39 H 0.092 0.908 40 H 0.078 0.922 41 H 0.057 0.943 42 H 0.051 0.949 43 H 0.057 0.943 44 H -0.011 1.011 45 H 0.048 0.952 46 H 0.249 0.751 47 H 0.009 0.991 48 H 0.053 0.947 49 H 0.086 0.914 50 H 0.058 0.942 51 H 0.049 0.951 52 H 0.051 0.949 53 H 0.064 0.936 54 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.774 6.395 4.237 31.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.115 4.115 3 H 0.079 0.921 4 C -0.145 4.145 5 C -0.144 4.144 6 C -0.118 4.118 7 H 0.136 0.864 8 C 0.295 3.705 9 O -0.473 6.473 10 N -0.367 5.367 11 C -0.004 4.004 12 C -0.143 4.143 13 C -0.091 4.091 14 C -0.163 4.163 15 C 0.049 3.951 16 N -0.335 5.335 17 C -0.391 4.391 18 H 0.086 0.914 19 C -0.251 4.251 20 N -0.584 5.584 21 Si 0.796 3.204 22 H -0.213 1.213 23 H -0.223 1.223 24 H -0.190 1.190 25 C 0.011 3.989 26 C -0.151 4.151 27 C -0.138 4.138 28 C -0.146 4.146 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.104 0.896 35 H 0.073 0.927 36 H 0.254 0.746 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.111 0.889 40 H 0.096 0.904 41 H 0.075 0.925 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.007 0.993 45 H 0.066 0.934 46 H 0.058 0.942 47 H 0.027 0.973 48 H 0.072 0.928 49 H 0.105 0.895 50 H 0.077 0.923 51 H 0.068 0.932 52 H 0.070 0.930 53 H 0.083 0.917 54 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -30.219 6.752 3.508 31.162 hybrid contribution 1.300 -0.693 -0.473 1.548 sum -28.919 6.058 3.034 29.702 Atomic orbital electron populations 1.21802 0.94347 1.02214 1.01858 1.21186 0.96102 0.99311 0.94905 0.92110 1.21578 0.93475 1.01718 0.97763 1.21539 0.97093 1.00257 0.95545 1.21381 0.88524 1.03413 0.98506 0.86434 1.21407 0.91490 0.76696 0.80937 1.90697 1.71758 1.47041 1.37795 1.45959 1.07031 1.58212 1.25495 1.21314 0.79775 1.00210 0.99090 1.21693 0.94214 1.01423 0.96964 1.20902 0.94643 0.98552 0.94970 1.22081 0.96543 0.99555 0.98076 1.20583 0.90927 0.95537 0.88077 1.44348 1.48349 1.39127 1.01684 1.19565 1.09873 1.06169 1.03533 0.91413 1.25838 0.98620 1.01109 0.99496 1.70213 1.38801 1.33398 1.16015 0.85253 0.77166 0.79908 0.78070 1.21265 1.22290 1.19044 1.21120 0.94114 0.94521 0.89175 1.21893 0.95316 1.00897 0.97018 1.21312 0.96386 0.99980 0.96102 1.21586 0.93255 1.01522 0.98189 0.92257 0.92852 0.92127 0.90498 0.90624 0.89579 0.92695 0.74623 0.93303 0.93000 0.88918 0.90370 0.92468 0.92979 0.92457 0.99285 0.93362 0.94247 0.97293 0.92848 0.89540 0.92313 0.93219 0.92973 0.91691 0.90832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 9.19 71.98 0.66 -0.47 16 2 C -0.10 -0.95 2.72 -10.79 -0.03 -0.98 16 3 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 4 C -0.11 -0.85 5.20 30.59 0.16 -0.70 16 5 C -0.11 -1.12 5.10 30.60 0.16 -0.97 16 6 C -0.10 -1.44 2.53 -11.54 -0.03 -1.47 16 7 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 8 C 0.51 11.69 7.15 87.66 0.63 12.32 16 9 O -0.59 -20.02 15.98 -3.04 -0.05 -20.07 16 10 N -0.71 -13.44 5.45 -463.06 -2.52 -15.97 16 11 C 0.12 2.90 5.43 86.38 0.47 3.36 16 12 C -0.11 -2.21 4.80 30.60 0.15 -2.06 16 13 C -0.07 -2.15 2.15 -10.77 -0.02 -2.18 16 14 C -0.12 -4.70 5.14 30.67 0.16 -4.54 16 15 C 0.17 8.79 5.31 86.36 0.46 9.25 16 16 N -0.61 -31.47 2.99 -699.10 -2.09 -33.56 16 17 C -0.26 -14.70 9.59 84.03 0.81 -13.90 16 18 H 0.07 3.69 7.89 -2.91 -0.02 3.67 16 19 C -0.06 -3.20 4.91 84.86 0.42 -2.78 16 20 N -0.94 -57.54 11.19 21.65 0.24 -57.30 16 21 Si 0.97 45.90 29.59 68.60 2.03 47.93 16 22 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 23 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 24 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 25 C 0.14 5.61 6.52 86.36 0.56 6.18 16 26 C -0.11 -3.46 5.36 30.67 0.16 -3.29 16 27 C -0.10 -1.72 4.49 30.59 0.14 -1.58 16 28 C -0.11 -1.26 5.20 30.60 0.16 -1.10 16 29 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.08 0.47 8.14 -2.38 -0.02 0.45 16 33 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.09 0.60 7.56 -2.39 -0.02 0.59 16 35 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.42 4.70 7.89 -92.70 -0.73 3.97 16 37 H 0.05 1.43 6.53 -2.39 -0.02 1.41 16 38 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 41 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 43 H 0.06 2.07 6.50 -2.39 -0.02 2.05 16 44 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 45 H 0.05 2.77 6.04 -2.39 -0.01 2.75 16 46 H 0.25 14.77 8.31 -92.70 -0.77 14.00 16 47 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 48 H 0.05 2.15 7.93 -2.39 -0.02 2.13 16 49 H 0.09 2.06 8.14 -2.38 -0.02 2.04 16 50 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 51 H 0.05 1.04 8.10 -2.39 -0.02 1.02 16 52 H 0.05 1.07 8.10 -2.39 -0.02 1.05 16 53 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 54 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 Total: -1.00 -73.23 406.87 2.71 -70.52 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: 0.11 Total: 13.37 kcal Atomic # 6 Polarization: -9.91 SS G_CDS: 5.00 Total: -4.91 kcal Atomic # 7 Polarization: -102.45 SS G_CDS: -4.37 Total: -106.83 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: -0.05 Total: -20.07 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -73.23 2.71 -70.52 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753599214.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.808 kcal (2) G-P(sol) polarization free energy of solvation -73.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds