Wall clock time and date at job start Tue Mar 31 2020 15:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09003 * 110.43213 * 2 1 4 4 C 1.54887 * 110.48603 * 122.68024 * 2 1 3 5 5 C 1.55004 * 102.75554 * 156.63391 * 4 2 1 6 6 C 1.54269 * 104.13652 * 322.05031 * 5 4 2 7 7 C 1.53001 * 110.03293 * 142.92883 * 6 5 4 8 8 C 1.50699 * 110.03324 * 264.31251 * 6 5 4 9 9 O 1.21280 * 119.99939 * 14.20269 * 8 6 5 10 10 N 1.34778 * 120.00080 * 194.20626 * 8 6 5 11 11 C 1.47418 * 125.64854 * 354.82464 * 10 8 6 12 12 C 1.54912 * 104.83408 * 204.09394 * 11 10 8 13 13 C 1.55155 * 101.61266 * 322.97064 * 12 11 10 14 14 C 1.47019 * 125.64788 * 174.78086 * 10 8 6 15 15 H 1.08999 * 109.88330 * 59.40122 * 14 10 8 16 16 C 1.53005 * 109.88209 * 298.39532 * 14 10 8 17 17 N 1.46498 * 109.47205 * 71.47860 * 16 14 10 18 18 C 1.36937 * 119.99687 * 187.57555 * 17 16 14 19 19 H 1.07995 * 119.99974 * 359.97438 * 18 17 16 20 20 C 1.38815 * 119.99626 * 180.02562 * 18 17 16 21 21 N 1.31617 * 120.00050 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99827 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47034 * 89.99705 * 22 20 18 24 24 H 1.48494 * 109.46846 * 209.99455 * 22 20 18 25 25 H 1.48498 * 109.47146 * 329.99570 * 22 20 18 26 26 C 1.53871 * 106.64055 * 23.62336 * 6 5 4 27 27 C 1.52996 * 110.03577 * 119.25800 * 26 6 5 28 28 C 1.53003 * 110.03302 * 240.64692 * 26 6 5 29 29 H 1.08998 * 109.46793 * 182.54564 * 1 2 3 30 30 H 1.09002 * 109.47419 * 302.54104 * 1 2 3 31 31 H 1.08997 * 109.47397 * 62.54706 * 1 2 3 32 32 H 1.08999 * 110.75923 * 274.94235 * 4 2 1 33 33 H 1.09004 * 110.75498 * 38.12063 * 4 2 1 34 34 H 1.09000 * 110.52969 * 203.39078 * 5 4 2 35 35 H 1.09001 * 110.50347 * 80.70280 * 5 4 2 36 36 H 1.09003 * 109.47254 * 189.61055 * 7 6 5 37 37 H 1.09003 * 109.47335 * 309.61383 * 7 6 5 38 38 H 1.08998 * 109.47089 * 69.61473 * 7 6 5 39 39 H 1.08999 * 110.37225 * 85.25461 * 11 10 8 40 40 H 1.09001 * 110.46291 * 322.97663 * 11 10 8 41 41 H 1.08996 * 111.00712 * 81.06013 * 12 11 10 42 42 H 1.08997 * 111.00412 * 204.87837 * 12 11 10 43 43 H 1.08996 * 110.72224 * 153.88610 * 13 12 11 44 44 H 1.09004 * 110.72134 * 277.15919 * 13 12 11 45 45 H 1.09008 * 109.46628 * 191.47955 * 16 14 10 46 46 H 1.09003 * 109.46667 * 311.47491 * 16 14 10 47 47 H 0.96998 * 119.99973 * 7.57102 * 17 16 14 48 48 H 0.96998 * 119.99995 * 180.02562 * 21 20 18 49 49 H 1.09005 * 109.46879 * 60.00543 * 27 26 6 50 50 H 1.09002 * 109.47464 * 179.97438 * 27 26 6 51 51 H 1.08992 * 109.47495 * 300.00397 * 27 26 6 52 52 H 1.09000 * 109.47366 * 63.25826 * 28 26 6 53 53 H 1.08995 * 109.47480 * 183.26657 * 28 26 6 54 54 H 1.09004 * 109.46297 * 303.26147 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9106 1.0215 0.0000 4 6 2.0721 -0.7834 1.2212 5 6 3.4920 -1.1989 0.7585 6 6 3.3166 -1.5395 -0.7358 7 6 4.5464 -1.0854 -1.5247 8 6 3.1130 -3.0229 -0.9068 9 8 2.8494 -3.7136 0.0547 10 7 3.2238 -3.5820 -2.1281 11 6 3.4319 -2.8517 -3.3917 12 6 2.8827 -3.7957 -4.4904 13 6 3.3080 -5.1860 -3.9488 14 6 3.1582 -5.0213 -2.4207 15 1 2.1986 -5.4225 -2.0947 16 6 4.2970 -5.7503 -1.7047 17 7 4.0292 -5.7791 -0.2646 18 6 4.9843 -6.2430 0.6002 19 1 5.9346 -6.5880 0.2206 20 6 4.7304 -6.2707 1.9646 21 7 3.5719 -5.8506 2.4271 22 14 6.0329 -6.9042 3.1443 23 1 6.8965 -5.7773 3.5796 24 1 5.3746 -7.5098 4.3296 25 1 6.8629 -7.9289 2.4615 26 6 2.0700 -0.7773 -1.2182 27 6 2.4507 0.1969 -2.3347 28 6 1.0144 -1.7640 -1.7213 29 1 -0.3633 -1.0267 0.0456 30 1 -0.3634 0.5528 0.8663 31 1 -0.3634 0.4738 -0.9119 32 1 2.1251 -0.1407 2.1000 33 1 1.4562 -1.6600 1.4223 34 1 3.8335 -2.0739 1.3116 35 1 4.1910 -0.3717 0.8818 36 1 4.3456 -1.1724 -2.5926 37 1 4.7715 -0.0471 -1.2808 38 1 5.3982 -1.7130 -1.2629 39 1 4.4936 -2.6625 -3.5502 40 1 2.8769 -1.9136 -3.3855 41 1 1.7978 -3.7202 -4.5638 42 1 3.3525 -3.5906 -5.4523 43 1 2.6423 -5.9649 -4.3206 44 1 4.3429 -5.4030 -4.2137 45 1 4.3687 -6.7707 -2.0814 46 1 5.2357 -5.2279 -1.8894 47 1 3.1755 -5.4694 0.0762 48 1 3.3946 -5.8697 3.3806 49 1 2.8774 -0.3574 -3.1707 50 1 1.5616 0.7312 -2.6696 51 1 3.1842 0.9106 -1.9598 52 1 0.6896 -2.3999 -0.8978 53 1 0.1599 -1.2131 -2.1140 54 1 1.4420 -2.3821 -2.5108 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754617660.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:27 Heat of formation + Delta-G solvation = -22.296186 kcal Electronic energy + Delta-G solvation = -31514.445187 eV Core-core repulsion = 27872.342858 eV Total energy + Delta-G solvation = -3642.102329 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.41270 -39.81922 -38.03592 -36.23114 -34.33394 -33.38682 -33.05255 -32.01070 -30.26452 -29.08698 -28.33338 -26.75981 -25.40578 -24.53522 -24.24949 -23.58357 -22.26263 -21.23266 -19.91747 -19.30738 -18.52200 -17.95590 -17.04977 -16.79300 -16.50220 -16.32993 -15.44431 -15.27734 -15.15872 -14.92663 -14.75853 -14.45883 -14.30989 -14.24461 -13.85609 -13.78263 -13.64730 -13.29923 -13.20088 -13.10696 -13.01248 -12.86923 -12.67640 -12.42686 -12.39441 -12.27544 -12.17557 -12.06451 -11.93664 -11.83305 -11.61219 -11.56582 -11.50039 -11.38505 -11.29173 -11.20098 -10.94287 -10.90719 -10.14100 -9.33173 -8.78498 -7.79683 -5.08160 1.37740 1.41573 1.49697 2.03458 2.26864 2.56893 3.42722 3.46089 3.54753 3.60419 3.73373 3.77935 4.01216 4.13539 4.22910 4.25264 4.31206 4.36501 4.40895 4.44461 4.46497 4.47886 4.51895 4.65249 4.68111 4.79645 4.81923 4.83468 4.85057 4.88288 4.89689 4.93744 4.97941 5.01403 5.06107 5.08854 5.17558 5.17784 5.20765 5.22648 5.27696 5.29539 5.32493 5.41379 5.45313 5.46475 5.50432 5.59932 5.68921 5.74658 6.36047 6.87864 7.41768 7.67272 8.36452 8.69578 9.40602 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.012152 B = 0.005742 C = 0.004418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.626708 B = 4875.437878 C = 6336.581897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.077 4.077 3 H 0.099 0.901 4 C -0.116 4.116 5 C -0.108 4.108 6 C -0.064 4.064 7 C -0.148 4.148 8 C 0.522 3.478 9 O -0.530 6.530 10 N -0.615 5.615 11 C 0.076 3.924 12 C -0.120 4.120 13 C -0.114 4.114 14 C 0.131 3.869 15 H 0.040 0.960 16 C 0.142 3.858 17 N -0.739 5.739 18 C -0.247 4.247 19 H 0.060 0.940 20 C -0.074 4.074 21 N -0.948 5.948 22 Si 0.965 3.035 23 H -0.292 1.292 24 H -0.294 1.294 25 H -0.269 1.269 26 C -0.041 4.041 27 C -0.142 4.142 28 C -0.154 4.154 29 H 0.037 0.963 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.032 0.968 34 H 0.025 0.975 35 H 0.086 0.914 36 H 0.099 0.901 37 H 0.088 0.912 38 H 0.026 0.974 39 H 0.074 0.926 40 H 0.107 0.893 41 H 0.081 0.919 42 H 0.117 0.883 43 H 0.093 0.907 44 H 0.084 0.916 45 H 0.016 0.984 46 H 0.010 0.990 47 H 0.393 0.607 48 H 0.241 0.759 49 H 0.073 0.927 50 H 0.074 0.926 51 H 0.073 0.927 52 H 0.018 0.982 53 H 0.080 0.920 54 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.234 17.442 -18.943 26.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.095 4.095 3 H 0.117 0.883 4 C -0.153 4.153 5 C -0.146 4.146 6 C -0.068 4.068 7 C -0.204 4.204 8 C 0.311 3.689 9 O -0.404 6.404 10 N -0.351 5.351 11 C -0.045 4.045 12 C -0.158 4.158 13 C -0.153 4.153 14 C 0.027 3.973 15 H 0.058 0.942 16 C 0.014 3.986 17 N -0.392 5.392 18 C -0.380 4.380 19 H 0.078 0.922 20 C -0.267 4.267 21 N -0.598 5.598 22 Si 0.795 3.205 23 H -0.219 1.219 24 H -0.221 1.221 25 H -0.194 1.194 26 C -0.041 4.041 27 C -0.198 4.198 28 C -0.211 4.211 29 H 0.056 0.944 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.051 0.949 34 H 0.044 0.956 35 H 0.104 0.896 36 H 0.117 0.883 37 H 0.106 0.894 38 H 0.046 0.954 39 H 0.092 0.908 40 H 0.124 0.876 41 H 0.100 0.900 42 H 0.135 0.865 43 H 0.111 0.889 44 H 0.103 0.897 45 H 0.034 0.966 46 H 0.028 0.972 47 H 0.236 0.764 48 H 0.050 0.950 49 H 0.092 0.908 50 H 0.093 0.907 51 H 0.092 0.908 52 H 0.037 0.963 53 H 0.099 0.901 54 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.275 17.042 -18.281 25.356 hybrid contribution 0.582 -1.245 1.967 2.399 sum -3.693 15.798 -16.314 23.008 Atomic orbital electron populations 1.21849 0.94460 1.01095 1.02420 1.22047 0.96007 0.99058 0.92412 0.88305 1.22478 0.95296 0.98766 0.98779 1.22311 0.98206 0.99987 0.94076 1.21419 0.98579 0.89859 0.96914 1.22373 0.94403 1.01902 1.01757 1.20725 0.76147 0.90653 0.81369 1.90704 1.46881 1.63239 1.39622 1.48514 1.73298 1.06451 1.06860 1.23105 1.01566 0.97344 0.82510 1.22839 1.02111 0.92339 0.98514 1.22619 1.03454 0.99632 0.89572 1.21770 0.96562 0.81992 0.97012 0.94220 1.21207 0.95914 0.96261 0.85247 1.43363 1.18600 1.76241 1.00950 1.19540 0.95977 1.33307 0.89149 0.92159 1.25530 0.99141 1.03624 0.98443 1.70000 1.24003 1.54164 1.11597 0.85268 0.78602 0.77808 0.78871 1.21944 1.22093 1.19415 1.21097 0.91781 0.94807 0.96439 1.22182 1.02658 0.98256 0.96715 1.22316 0.99502 0.98833 1.00487 0.94398 0.92482 0.90498 0.91052 0.94945 0.95570 0.89554 0.88266 0.89370 0.95442 0.90764 0.87556 0.89984 0.86515 0.88854 0.89743 0.96604 0.97228 0.76422 0.95049 0.90819 0.90709 0.90800 0.96324 0.90139 0.91035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 8.03 71.98 0.58 -2.33 16 2 C -0.08 -1.73 2.91 -9.72 -0.03 -1.76 16 3 H 0.10 1.75 7.83 -2.39 -0.02 1.73 16 4 C -0.12 -3.68 6.33 31.92 0.20 -3.48 16 5 C -0.11 -3.82 5.62 31.71 0.18 -3.65 16 6 C -0.06 -1.95 0.61 -52.20 -0.03 -1.98 16 7 C -0.15 -3.50 6.48 71.98 0.47 -3.03 16 8 C 0.52 20.92 4.35 87.66 0.38 21.30 16 9 O -0.53 -28.81 11.86 -3.03 -0.04 -28.85 16 10 N -0.62 -20.16 2.27 -787.87 -1.79 -21.94 16 11 C 0.08 1.52 3.75 86.86 0.33 1.85 16 12 C -0.12 -1.83 7.08 31.99 0.23 -1.60 16 13 C -0.11 -2.53 6.48 31.82 0.21 -2.32 16 14 C 0.13 4.66 3.08 45.38 0.14 4.80 16 15 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 16 C 0.14 6.51 5.64 86.38 0.49 7.00 16 17 N -0.74 -43.77 4.42 -343.44 -1.52 -45.29 16 18 C -0.25 -15.78 9.99 84.03 0.84 -14.94 16 19 H 0.06 3.71 7.83 -2.91 -0.02 3.69 16 20 C -0.07 -4.82 5.50 84.86 0.47 -4.36 16 21 N -0.95 -65.64 13.06 21.65 0.28 -65.36 16 22 Si 0.97 51.42 29.55 68.60 2.03 53.45 16 23 H -0.29 -15.32 7.11 99.48 0.71 -14.61 16 24 H -0.29 -15.58 7.11 99.48 0.71 -14.87 16 25 H -0.27 -13.47 7.11 99.48 0.71 -12.77 16 26 C -0.04 -0.91 0.56 -51.46 -0.03 -0.94 16 27 C -0.14 -1.90 7.04 71.98 0.51 -1.40 16 28 C -0.15 -3.84 5.85 71.98 0.42 -3.42 16 29 H 0.04 0.96 6.49 -2.39 -0.02 0.94 16 30 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.08 1.19 7.72 -2.39 -0.02 1.17 16 32 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.03 1.29 8.04 -2.38 -0.02 1.27 16 34 H 0.03 1.25 7.09 -2.39 -0.02 1.23 16 35 H 0.09 2.53 7.73 -2.39 -0.02 2.52 16 36 H 0.10 1.76 3.12 -2.39 -0.01 1.75 16 37 H 0.09 1.62 6.97 -2.39 -0.02 1.60 16 38 H 0.03 0.81 8.13 -2.39 -0.02 0.79 16 39 H 0.07 1.38 7.10 -2.39 -0.02 1.36 16 40 H 0.11 1.70 2.69 -2.39 -0.01 1.70 16 41 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.08 1.77 7.85 -2.38 -0.02 1.75 16 45 H 0.02 0.73 8.13 -2.38 -0.02 0.71 16 46 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 47 H 0.39 25.21 4.56 -94.95 -0.43 24.78 16 48 H 0.24 16.19 8.31 -92.71 -0.77 15.42 16 49 H 0.07 0.83 4.38 -2.38 -0.01 0.81 16 50 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 51 H 0.07 0.86 6.91 -2.39 -0.02 0.85 16 52 H 0.02 0.61 6.85 -2.39 -0.02 0.60 16 53 H 0.08 1.55 7.05 -2.39 -0.02 1.53 16 54 H 0.07 1.72 4.03 -2.38 -0.01 1.71 16 Total: -1.00 -87.54 375.72 4.76 -82.78 By element: Atomic # 1 Polarization: 35.02 SS G_CDS: 0.46 Total: 35.48 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: 5.34 Total: -10.27 kcal Atomic # 7 Polarization: -129.57 SS G_CDS: -3.02 Total: -132.59 kcal Atomic # 8 Polarization: -28.81 SS G_CDS: -0.04 Total: -28.85 kcal Atomic # 14 Polarization: 51.42 SS G_CDS: 2.03 Total: 53.45 kcal Total: -87.54 4.76 -82.78 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754617660.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.485 kcal (2) G-P(sol) polarization free energy of solvation -87.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds