Wall clock time and date at job start Tue Mar 31 2020 15:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47076 * 2 1 4 4 C 1.53008 * 109.46959 * 119.99824 * 2 1 3 5 5 C 1.53000 * 109.46959 * 179.97438 * 4 2 1 6 6 C 1.52996 * 109.47024 * 299.99794 * 5 4 2 7 7 H 1.09001 * 109.47116 * 299.99853 * 6 5 4 8 8 C 1.50703 * 109.47054 * 180.02562 * 6 5 4 9 9 O 1.21284 * 120.00019 * 359.97438 * 8 6 5 10 10 N 1.34775 * 120.00147 * 180.02562 * 8 6 5 11 11 C 1.46495 * 120.00039 * 175.30900 * 10 8 6 12 12 H 1.08995 * 109.47503 * 38.56386 * 11 10 8 13 13 C 1.53010 * 109.47245 * 158.56405 * 11 10 8 14 14 N 1.46499 * 109.46769 * 303.05573 * 13 11 10 15 15 C 1.36941 * 119.99792 * 179.97438 * 14 13 11 16 16 H 1.07997 * 120.00002 * 0.02562 * 15 14 13 17 17 C 1.38810 * 120.00042 * 179.97438 * 15 14 13 18 18 N 1.31618 * 119.99782 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 120.00004 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47560 * 90.00245 * 19 17 15 21 21 H 1.48506 * 109.47110 * 210.00724 * 19 17 15 22 22 H 1.48501 * 109.47357 * 330.00052 * 19 17 15 23 23 C 1.52996 * 109.46809 * 278.56134 * 11 10 8 24 24 C 1.54268 * 110.03262 * 298.97865 * 23 11 10 25 25 C 1.54893 * 104.19620 * 217.10656 * 24 23 11 26 26 C 1.54892 * 102.75100 * 37.94136 * 25 24 23 27 27 C 1.53880 * 110.03370 * 181.81536 * 23 11 10 28 28 C 1.52994 * 109.47153 * 60.00449 * 6 5 4 29 29 C 1.52996 * 109.47024 * 239.99617 * 2 1 3 30 30 H 1.09000 * 109.47020 * 300.00629 * 1 2 3 31 31 H 1.09003 * 109.47151 * 59.99818 * 1 2 3 32 32 H 1.09000 * 109.47577 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46588 * 300.00065 * 4 2 1 34 34 H 1.09000 * 109.46784 * 59.99749 * 4 2 1 35 35 H 1.08997 * 109.47076 * 60.00176 * 5 4 2 36 36 H 1.08998 * 109.46686 * 179.97438 * 5 4 2 37 37 H 0.97000 * 119.99793 * 355.30134 * 10 8 6 38 38 H 1.09001 * 109.46606 * 63.05481 * 13 11 10 39 39 H 1.08992 * 109.47079 * 183.05711 * 13 11 10 40 40 H 0.97001 * 120.00235 * 359.97438 * 14 13 11 41 41 H 0.97005 * 119.99941 * 179.97438 * 18 17 15 42 42 H 1.08994 * 110.01858 * 60.42266 * 23 11 10 43 43 H 1.08990 * 110.48796 * 335.78135 * 24 23 11 44 44 H 1.08995 * 110.48637 * 98.43311 * 24 23 11 45 45 H 1.09002 * 110.75712 * 279.63090 * 25 24 23 46 46 H 1.08998 * 110.75575 * 156.25868 * 25 24 23 47 47 H 1.08994 * 110.48702 * 203.37994 * 26 25 24 48 48 H 1.09004 * 110.59243 * 80.78880 * 26 25 24 49 49 H 1.09003 * 110.03112 * 238.57224 * 27 23 11 50 50 H 1.09006 * 110.03060 * 359.94744 * 27 23 11 51 51 H 1.08993 * 109.47728 * 59.99970 * 28 6 5 52 52 H 1.09005 * 109.47352 * 179.97438 * 28 6 5 53 53 H 1.09001 * 109.47116 * 299.99853 * 29 2 1 54 54 H 1.08998 * 109.47380 * 60.00437 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5700 -0.7218 1.2490 6 6 4.0794 -1.4435 -0.0001 7 1 3.7157 -2.4710 0.0002 8 6 5.5864 -1.4446 -0.0002 9 8 6.1932 -0.9194 0.9092 10 7 6.2599 -2.0283 -1.0112 11 6 7.7212 -1.9405 -1.0648 12 1 8.1278 -2.0291 -0.0575 13 6 8.2685 -3.0723 -1.9370 14 7 7.8165 -4.3605 -1.4056 15 6 8.1840 -5.5244 -2.0266 16 1 8.8075 -5.4926 -2.9079 17 6 7.7562 -6.7450 -1.5228 18 7 6.9968 -6.7837 -0.4485 19 14 8.2582 -8.3325 -2.3695 20 1 9.5342 -8.8215 -1.7884 21 1 7.1999 -9.3553 -2.1713 22 1 8.4393 -8.0830 -3.8222 23 6 8.1295 -0.5928 -1.6629 24 6 7.5819 -0.4645 -3.0994 25 6 8.7019 0.2802 -3.8678 26 6 9.9926 -0.3265 -3.2636 27 6 9.6623 -0.5051 -1.7674 28 6 3.5695 -0.7223 -1.2494 29 6 2.0400 -0.7213 -1.2492 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6766 -0.2073 2.1393 34 1 1.6766 -1.7489 1.2493 35 1 3.9337 0.3057 1.2488 36 1 3.9332 -1.2352 2.1392 37 1 5.7770 -2.5066 -1.7032 38 1 7.9051 -2.9526 -2.9577 39 1 9.3579 -3.0398 -1.9331 40 1 7.2568 -4.3891 -0.6138 41 1 6.6975 -7.6367 -0.0966 42 1 7.7503 0.2203 -1.0440 43 1 7.4127 -1.4502 -3.5327 44 1 6.6616 0.1194 -3.1061 45 1 8.6535 1.3525 -3.6778 46 1 8.6410 0.0730 -4.9361 47 1 10.8313 0.3580 -3.3901 48 1 10.2149 -1.2898 -3.7228 49 1 10.0268 0.3511 -1.1997 50 1 10.1153 -1.4223 -1.3911 51 1 3.9332 0.3052 -1.2498 52 1 3.9328 -1.2362 -2.1394 53 1 1.6766 -1.7490 -1.2491 54 1 1.6767 -0.2075 -2.1392 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754654287.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:31:26 Heat of formation + Delta-G solvation = -91.053387 kcal Electronic energy + Delta-G solvation = -29090.394715 eV Core-core repulsion = 25445.310850 eV Total energy + Delta-G solvation = -3645.083865 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.46880 -39.89274 -38.62126 -36.73994 -35.21828 -33.80641 -32.84560 -31.67546 -30.89853 -29.54274 -27.99453 -27.55474 -25.13524 -23.72093 -23.51995 -22.88133 -21.51893 -21.06805 -20.59752 -20.03517 -19.13420 -18.11782 -17.49128 -16.79776 -16.40461 -16.31283 -15.91054 -15.52221 -15.28792 -15.15111 -15.08461 -15.02651 -14.77109 -14.36513 -14.10073 -14.00266 -13.50516 -13.46575 -13.12406 -13.08194 -13.05702 -12.77078 -12.64355 -12.34512 -12.18789 -12.11623 -12.00554 -11.91383 -11.88471 -11.87194 -11.84042 -11.77682 -11.55853 -11.39185 -11.23847 -11.18764 -10.90787 -10.89936 -10.56304 -9.91436 -8.99369 -7.94243 -5.23819 1.47945 1.49355 1.57642 1.70929 2.28184 2.56045 3.40007 3.59629 3.63545 3.71829 3.74282 3.78807 3.84393 4.03757 4.17071 4.18773 4.20137 4.29652 4.35947 4.45235 4.52059 4.53760 4.59269 4.61916 4.66860 4.69354 4.75888 4.85528 4.85949 4.87060 4.93469 4.94540 5.02447 5.06372 5.12032 5.13815 5.15836 5.17124 5.20747 5.26698 5.29683 5.33967 5.38197 5.44548 5.45735 5.48834 5.50453 5.56127 5.62495 5.67407 6.26228 6.63635 7.32152 7.33461 8.06734 8.30870 9.28903 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.008605 B = 0.004176 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3253.294282 B = 6703.983723 C = 8958.307258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.092 4.092 3 H 0.069 0.931 4 C -0.109 4.109 5 C -0.093 4.093 6 C -0.102 4.102 7 H 0.096 0.904 8 C 0.514 3.486 9 O -0.588 6.588 10 N -0.704 5.704 11 C 0.154 3.846 12 H 0.048 0.952 13 C 0.150 3.850 14 N -0.743 5.743 15 C -0.243 4.243 16 H 0.079 0.921 17 C -0.072 4.072 18 N -0.969 5.969 19 Si 0.972 3.028 20 H -0.291 1.291 21 H -0.297 1.297 22 H -0.266 1.266 23 C -0.087 4.087 24 C -0.117 4.117 25 C -0.117 4.117 26 C -0.120 4.120 27 C -0.123 4.123 28 C -0.101 4.101 29 C -0.109 4.109 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.047 0.953 37 H 0.407 0.593 38 H 0.045 0.955 39 H 0.034 0.966 40 H 0.372 0.628 41 H 0.250 0.750 42 H 0.060 0.940 43 H 0.068 0.932 44 H 0.067 0.933 45 H 0.072 0.928 46 H 0.076 0.924 47 H 0.077 0.923 48 H 0.061 0.939 49 H 0.067 0.933 50 H 0.055 0.945 51 H 0.065 0.935 52 H 0.073 0.927 53 H 0.065 0.935 54 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.662 17.915 -5.640 20.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 H 0.088 0.912 4 C -0.147 4.147 5 C -0.131 4.131 6 C -0.123 4.123 7 H 0.114 0.886 8 C 0.302 3.698 9 O -0.469 6.469 10 N -0.354 5.354 11 C 0.048 3.952 12 H 0.066 0.934 13 C 0.024 3.976 14 N -0.386 5.386 15 C -0.374 4.374 16 H 0.096 0.904 17 C -0.264 4.264 18 N -0.619 5.619 19 Si 0.801 3.199 20 H -0.219 1.219 21 H -0.223 1.223 22 H -0.191 1.191 23 C -0.107 4.107 24 C -0.154 4.154 25 C -0.154 4.154 26 C -0.157 4.157 27 C -0.161 4.161 28 C -0.139 4.139 29 C -0.147 4.147 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.243 0.757 38 H 0.062 0.938 39 H 0.052 0.948 40 H 0.204 0.796 41 H 0.059 0.941 42 H 0.079 0.921 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.091 0.909 46 H 0.094 0.906 47 H 0.095 0.905 48 H 0.080 0.920 49 H 0.086 0.914 50 H 0.074 0.926 51 H 0.083 0.917 52 H 0.092 0.908 53 H 0.084 0.916 54 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.134 18.193 -5.159 20.586 hybrid contribution 0.181 -1.581 0.309 1.621 sum -7.953 16.612 -4.850 19.046 Atomic orbital electron populations 1.21800 0.94202 1.02016 1.02127 1.21154 0.96171 0.99418 0.94292 0.91234 1.21603 0.93284 1.01194 0.98612 1.21262 0.96368 1.00051 0.95458 1.21361 0.89229 1.02549 0.99140 0.88638 1.21212 0.91214 0.76753 0.80625 1.90630 1.71494 1.47812 1.36956 1.45934 1.07117 1.54842 1.27464 1.21033 0.80348 0.95253 0.98539 0.93388 1.21155 0.97062 0.83602 0.95831 1.42551 1.61425 1.01175 1.33431 1.19616 1.24710 0.85435 1.07677 0.90360 1.25528 1.01145 1.00826 0.98928 1.69834 1.41413 1.25026 1.25645 0.85168 0.76677 0.79580 0.78482 1.21876 1.22334 1.19079 1.21972 0.96323 0.94991 0.97461 1.22457 0.98569 1.00977 0.93409 1.22463 0.93763 0.99623 0.99587 1.22334 0.98315 1.01044 0.94047 1.22225 0.94123 1.01634 0.98089 1.21461 0.97111 1.00290 0.94997 1.21578 0.93443 1.01328 0.98301 0.92386 0.91949 0.92692 0.91019 0.91823 0.92253 0.93452 0.75715 0.93763 0.94782 0.79573 0.94139 0.92128 0.91356 0.91441 0.90914 0.90569 0.90461 0.92043 0.91382 0.92578 0.91673 0.90813 0.91636 0.90192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.19 71.98 0.66 -1.23 16 2 C -0.09 -1.47 2.72 -10.79 -0.03 -1.50 16 3 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 4 C -0.11 -2.08 5.20 30.60 0.16 -1.92 16 5 C -0.09 -2.35 4.49 30.59 0.14 -2.21 16 6 C -0.10 -2.64 2.52 -11.54 -0.03 -2.67 16 7 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 8 C 0.51 17.31 7.07 87.66 0.62 17.93 16 9 O -0.59 -24.17 15.68 -3.04 -0.05 -24.22 16 10 N -0.70 -22.94 4.15 -442.54 -1.84 -24.77 16 11 C 0.15 5.34 1.82 44.99 0.08 5.42 16 12 H 0.05 2.01 7.63 -2.39 -0.02 1.99 16 13 C 0.15 5.78 5.24 86.38 0.45 6.23 16 14 N -0.74 -37.00 5.45 -343.44 -1.87 -38.87 16 15 C -0.24 -13.23 9.99 84.03 0.84 -12.40 16 16 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 17 C -0.07 -4.07 5.50 84.86 0.47 -3.61 16 18 N -0.97 -59.08 13.06 21.65 0.28 -58.80 16 19 Si 0.97 45.59 29.55 68.60 2.03 47.61 16 20 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 21 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 22 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 23 C -0.09 -2.45 2.91 -10.07 -0.03 -2.47 16 24 C -0.12 -2.70 5.84 31.67 0.18 -2.51 16 25 C -0.12 -2.25 6.91 31.89 0.22 -2.03 16 26 C -0.12 -2.54 6.83 31.67 0.22 -2.32 16 27 C -0.12 -3.15 5.94 31.32 0.19 -2.96 16 28 C -0.10 -2.00 5.10 30.58 0.16 -1.84 16 29 C -0.11 -1.77 5.20 30.58 0.16 -1.61 16 30 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.06 0.71 8.14 -2.39 -0.02 0.70 16 32 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.06 1.56 8.10 -2.39 -0.02 1.54 16 36 H 0.05 1.38 8.10 -2.39 -0.02 1.36 16 37 H 0.41 12.57 8.14 -92.71 -0.75 11.81 16 38 H 0.04 1.61 5.93 -2.39 -0.01 1.60 16 39 H 0.03 1.35 6.47 -2.39 -0.02 1.33 16 40 H 0.37 20.32 7.40 -92.71 -0.69 19.63 16 41 H 0.25 14.85 8.31 -92.70 -0.77 14.08 16 42 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.07 1.71 5.64 -2.39 -0.01 1.70 16 44 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 46 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 47 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 48 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 49 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 50 H 0.06 1.63 6.21 -2.38 -0.01 1.61 16 51 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 52 H 0.07 1.39 7.68 -2.38 -0.02 1.37 16 53 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 54 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -66.68 407.53 2.43 -64.24 By element: Atomic # 1 Polarization: 47.09 SS G_CDS: -0.58 Total: 46.51 kcal Atomic # 6 Polarization: -16.16 SS G_CDS: 4.45 Total: -11.71 kcal Atomic # 7 Polarization: -119.02 SS G_CDS: -3.42 Total: -122.44 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: -0.05 Total: -24.22 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.61 kcal Total: -66.68 2.43 -64.24 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754654287.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.809 kcal (2) G-P(sol) polarization free energy of solvation -66.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds