Wall clock time and date at job start Tue Mar 31 2020 15:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47061 * 2 1 4 4 C 1.53002 * 109.46875 * 120.00452 * 2 1 3 5 5 C 1.53003 * 109.46875 * 179.97438 * 4 2 1 6 6 C 1.52999 * 109.46824 * 299.99890 * 5 4 2 7 7 H 1.09001 * 109.47351 * 300.00023 * 6 5 4 8 8 C 1.50698 * 109.47069 * 180.02562 * 6 5 4 9 9 O 1.21287 * 119.99990 * 359.97438 * 8 6 5 10 10 N 1.34780 * 120.00154 * 179.97438 * 8 6 5 11 11 C 1.46500 * 119.99810 * 184.99352 * 10 8 6 12 12 H 1.08998 * 109.47408 * 4.79079 * 11 10 8 13 13 C 1.53004 * 109.47242 * 244.78446 * 11 10 8 14 14 N 1.46508 * 109.46588 * 55.00581 * 13 11 10 15 15 C 1.36936 * 119.99715 * 179.97438 * 14 13 11 16 16 H 1.08000 * 120.00210 * 0.02562 * 15 14 13 17 17 C 1.38814 * 119.99696 * 180.02562 * 15 14 13 18 18 N 1.31610 * 120.00194 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99766 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47294 * 59.99490 * 19 17 15 21 21 H 1.48496 * 109.47068 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.46993 * 300.00156 * 19 17 15 23 23 C 1.53010 * 109.47002 * 124.79238 * 11 10 8 24 24 C 1.54881 * 110.48575 * 187.08269 * 23 11 10 25 25 C 1.55241 * 102.58622 * 156.67477 * 24 23 11 26 26 C 1.54260 * 104.23243 * 322.08004 * 25 24 23 27 27 C 1.53874 * 106.59839 * 23.61076 * 26 25 24 28 28 C 1.53001 * 109.47769 * 60.00105 * 6 5 4 29 29 C 1.52999 * 109.46824 * 240.00342 * 2 1 3 30 30 H 1.09003 * 109.47156 * 299.99679 * 1 2 3 31 31 H 1.09000 * 109.46953 * 59.99450 * 1 2 3 32 32 H 1.08996 * 109.47061 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47202 * 60.00037 * 4 2 1 34 34 H 1.08998 * 109.47078 * 299.99423 * 4 2 1 35 35 H 1.08997 * 109.47461 * 180.02562 * 5 4 2 36 36 H 1.09001 * 109.47420 * 59.99277 * 5 4 2 37 37 H 0.96996 * 120.00084 * 4.99363 * 10 8 6 38 38 H 1.08998 * 109.47036 * 174.99786 * 13 11 10 39 39 H 1.08996 * 109.47218 * 295.00958 * 13 11 10 40 40 H 0.97000 * 119.99757 * 359.97438 * 14 13 11 41 41 H 0.96998 * 119.99962 * 180.02562 * 18 17 15 42 42 H 1.08997 * 110.43619 * 64.53454 * 23 11 10 43 43 H 1.09004 * 110.75831 * 275.06488 * 24 23 11 44 44 H 1.09000 * 110.76098 * 38.43187 * 24 23 11 45 45 H 1.09000 * 110.46588 * 203.39384 * 25 24 23 46 46 H 1.08998 * 110.46903 * 80.77289 * 25 24 23 47 47 H 1.09000 * 110.03487 * 264.33108 * 26 25 24 48 48 H 1.08999 * 110.03532 * 142.89620 * 26 25 24 49 49 H 1.08990 * 110.03626 * 240.71510 * 27 26 25 50 50 H 1.09004 * 110.07248 * 119.30144 * 27 26 25 51 51 H 1.09001 * 109.46751 * 59.99550 * 28 6 5 52 52 H 1.08998 * 109.47542 * 180.02562 * 28 6 5 53 53 H 1.09001 * 109.47351 * 300.00023 * 29 2 1 54 54 H 1.08996 * 109.47586 * 59.99506 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5700 -0.7219 1.2489 6 6 4.0794 -1.4435 -0.0004 7 1 3.7157 -2.4710 -0.0003 8 6 5.5864 -1.4446 -0.0005 9 8 6.1932 -0.9195 0.9090 10 7 6.2598 -2.0291 -1.0111 11 6 7.7206 -2.1270 -0.9579 12 1 8.0750 -1.7539 0.0029 13 6 8.3292 -1.2911 -2.0857 14 7 7.8323 0.0843 -1.9968 15 6 8.2430 1.0208 -2.9075 16 1 8.9329 0.7455 -3.6915 17 6 7.7726 2.3241 -2.8229 18 7 6.9315 2.6595 -1.8678 19 14 8.3323 3.6015 -4.0657 20 1 7.9429 3.1673 -5.4314 21 1 7.6901 4.9049 -3.7591 22 1 9.8084 3.7475 -3.9948 23 6 8.1401 -3.5891 -1.1235 24 6 9.6639 -3.7451 -0.8943 25 6 9.7951 -5.2402 -0.4975 26 6 8.5503 -5.5123 0.3721 27 6 7.4980 -4.4626 -0.0259 28 6 3.5695 -0.7222 -1.2497 29 6 2.0400 -0.7212 -1.2493 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6766 -1.7490 1.2491 34 1 1.6767 -0.2075 2.1392 35 1 3.9334 -1.2362 2.1386 36 1 3.9338 0.3056 1.2486 37 1 5.7774 -2.3849 -1.7736 38 1 9.4152 -1.2917 -1.9929 39 1 8.0463 -1.7181 -3.0478 40 1 7.2124 0.3314 -1.2928 41 1 6.6026 3.5701 -1.8090 42 1 7.8636 -3.9547 -2.1124 43 1 10.2158 -3.5362 -1.8108 44 1 10.0008 -3.0990 -0.0836 45 1 10.7059 -5.4031 0.0786 46 1 9.7859 -5.8724 -1.3853 47 1 8.8018 -5.4073 1.4274 48 1 8.1701 -6.5149 0.1764 49 1 7.2389 -3.8482 0.8362 50 1 6.6067 -4.9550 -0.4146 51 1 3.9332 0.3053 -1.2498 52 1 3.9320 -1.2366 -2.1397 53 1 1.6766 -1.7488 -1.2494 54 1 1.6766 -0.2074 -2.1393 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754654288.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:31:29 Heat of formation + Delta-G solvation = -96.180519 kcal Electronic energy + Delta-G solvation = -29244.423034 eV Core-core repulsion = 25599.116840 eV Total energy + Delta-G solvation = -3645.306194 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.37638 -39.68624 -38.57056 -36.83161 -35.24278 -33.83422 -32.85358 -31.69375 -30.95888 -29.50662 -27.97861 -27.50367 -25.16395 -23.61637 -23.51563 -22.39938 -21.52221 -20.99110 -20.80011 -20.45286 -19.21162 -18.02992 -17.35532 -16.77345 -16.38698 -16.35344 -15.96097 -15.41076 -15.26571 -15.13470 -15.08579 -14.96797 -14.69359 -14.20758 -14.15229 -13.95497 -13.78524 -13.35133 -13.08167 -13.05842 -13.05033 -12.80920 -12.51585 -12.39158 -12.26611 -12.14132 -12.02057 -11.99086 -11.89099 -11.87807 -11.81875 -11.62233 -11.56797 -11.45623 -11.25748 -11.20773 -10.96968 -10.90591 -10.52389 -9.86388 -8.99260 -7.92800 -5.23040 1.43115 1.47143 1.53305 1.78416 2.33265 2.54576 3.38963 3.54274 3.68291 3.71931 3.75164 3.79731 3.85600 4.15427 4.17317 4.19926 4.23246 4.30783 4.41599 4.46089 4.53106 4.59843 4.60633 4.63029 4.64919 4.72678 4.74380 4.79987 4.86195 4.89319 4.92113 4.94466 5.00911 5.04360 5.06272 5.13010 5.14411 5.17693 5.24864 5.29218 5.30838 5.35019 5.36258 5.44682 5.46394 5.47270 5.51422 5.53582 5.63231 5.71314 6.26074 6.69142 7.32760 7.43436 8.11505 8.34517 9.29473 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.006522 B = 0.005750 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4292.150658 B = 4868.814090 C = 8566.242872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.099 4.099 3 H 0.042 0.958 4 C -0.101 4.101 5 C -0.098 4.098 6 C -0.091 4.091 7 H 0.128 0.872 8 C 0.513 3.487 9 O -0.590 6.590 10 N -0.703 5.703 11 C 0.149 3.851 12 H 0.061 0.939 13 C 0.141 3.859 14 N -0.743 5.743 15 C -0.247 4.247 16 H 0.077 0.923 17 C -0.076 4.076 18 N -0.966 5.966 19 Si 0.974 3.026 20 H -0.274 1.274 21 H -0.298 1.298 22 H -0.279 1.279 23 C -0.087 4.087 24 C -0.121 4.121 25 C -0.116 4.116 26 C -0.122 4.122 27 C -0.110 4.110 28 C -0.105 4.105 29 C -0.102 4.102 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.030 0.970 37 H 0.408 0.592 38 H 0.026 0.974 39 H 0.032 0.968 40 H 0.374 0.626 41 H 0.248 0.752 42 H 0.095 0.905 43 H 0.072 0.928 44 H 0.050 0.950 45 H 0.070 0.930 46 H 0.079 0.921 47 H 0.056 0.944 48 H 0.079 0.921 49 H 0.037 0.963 50 H 0.076 0.924 51 H 0.027 0.973 52 H 0.072 0.928 53 H 0.090 0.910 54 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.078 -19.066 2.284 21.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.118 4.118 3 H 0.061 0.939 4 C -0.139 4.139 5 C -0.136 4.136 6 C -0.112 4.112 7 H 0.146 0.854 8 C 0.301 3.699 9 O -0.470 6.470 10 N -0.353 5.353 11 C 0.044 3.956 12 H 0.079 0.921 13 C 0.014 3.986 14 N -0.386 5.386 15 C -0.379 4.379 16 H 0.094 0.906 17 C -0.268 4.268 18 N -0.617 5.617 19 Si 0.803 3.197 20 H -0.200 1.200 21 H -0.224 1.224 22 H -0.206 1.206 23 C -0.107 4.107 24 C -0.159 4.159 25 C -0.154 4.154 26 C -0.159 4.159 27 C -0.147 4.147 28 C -0.143 4.143 29 C -0.139 4.139 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.105 0.895 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.049 0.951 37 H 0.244 0.756 38 H 0.044 0.956 39 H 0.050 0.950 40 H 0.206 0.794 41 H 0.057 0.943 42 H 0.113 0.887 43 H 0.091 0.909 44 H 0.069 0.931 45 H 0.088 0.912 46 H 0.098 0.902 47 H 0.075 0.925 48 H 0.098 0.902 49 H 0.056 0.944 50 H 0.095 0.905 51 H 0.046 0.954 52 H 0.091 0.909 53 H 0.109 0.891 54 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.550 -18.661 2.787 20.715 hybrid contribution 0.350 1.670 -0.495 1.776 sum -8.200 -16.992 2.292 19.006 Atomic orbital electron populations 1.21766 0.93447 1.02673 1.01780 1.21186 0.96713 0.98682 0.95222 0.93903 1.21552 0.92730 1.01896 0.97692 1.21297 0.96834 0.99240 0.96231 1.21315 0.89044 1.03140 0.97662 0.85399 1.21257 0.91367 0.76008 0.81244 1.90672 1.71475 1.45818 1.39016 1.45699 1.07011 1.60037 1.22514 1.21158 0.80316 0.95636 0.98498 0.92068 1.21219 0.96219 0.84658 0.96504 1.42554 1.55095 1.05980 1.34967 1.19611 1.21104 0.90568 1.06575 0.90556 1.25597 1.00681 0.99580 1.00926 1.69884 1.37346 1.18391 1.36072 0.85211 0.77630 0.78084 0.78812 1.19954 1.22393 1.20555 1.22243 0.96269 0.91592 1.00588 1.22608 0.94589 0.97470 1.01276 1.22383 0.97992 0.94925 1.00055 1.22125 0.95222 0.99049 0.99512 1.22064 0.98883 0.96582 0.97210 1.21436 0.97658 0.99276 0.95969 1.21530 0.92663 1.02056 0.97649 0.92520 0.92736 0.91109 0.89514 0.91406 0.91998 0.95136 0.75565 0.95628 0.94979 0.79361 0.94347 0.88711 0.90881 0.93076 0.91167 0.90198 0.92527 0.90243 0.94361 0.90529 0.95419 0.90888 0.89138 0.91761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 9.19 71.98 0.66 -1.67 16 2 C -0.10 -2.21 2.72 -10.79 -0.03 -2.24 16 3 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 4 C -0.10 -2.17 5.20 30.60 0.16 -2.01 16 5 C -0.10 -2.89 4.49 30.59 0.14 -2.75 16 6 C -0.09 -2.54 2.53 -11.54 -0.03 -2.57 16 7 H 0.13 2.58 8.14 -2.39 -0.02 2.56 16 8 C 0.51 18.85 6.55 87.66 0.57 19.42 16 9 O -0.59 -27.87 15.34 -3.05 -0.05 -27.92 16 10 N -0.70 -22.58 3.96 -442.51 -1.75 -24.33 16 11 C 0.15 5.14 1.88 45.00 0.08 5.23 16 12 H 0.06 2.60 6.88 -2.39 -0.02 2.58 16 13 C 0.14 5.82 5.73 86.38 0.50 6.32 16 14 N -0.74 -40.16 5.43 -343.44 -1.87 -42.03 16 15 C -0.25 -14.38 9.99 84.03 0.84 -13.54 16 16 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 17 C -0.08 -4.54 5.50 84.86 0.47 -4.07 16 18 N -0.97 -62.67 13.06 21.65 0.28 -62.39 16 19 Si 0.97 47.88 29.55 68.60 2.03 49.90 16 20 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 21 H -0.30 -14.79 7.11 99.48 0.71 -14.09 16 22 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 23 C -0.09 -2.14 2.60 -9.72 -0.03 -2.16 16 24 C -0.12 -2.85 5.62 32.01 0.18 -2.67 16 25 C -0.12 -2.06 6.84 31.79 0.22 -1.85 16 26 C -0.12 -2.20 6.80 31.32 0.21 -1.99 16 27 C -0.11 -2.41 5.97 31.32 0.19 -2.22 16 28 C -0.11 -3.04 5.10 30.58 0.16 -2.89 16 29 C -0.10 -2.20 5.20 30.58 0.16 -2.04 16 30 H 0.06 0.90 8.14 -2.39 -0.02 0.89 16 31 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.06 1.83 8.10 -2.39 -0.02 1.81 16 36 H 0.03 1.14 8.10 -2.39 -0.02 1.12 16 37 H 0.41 10.75 8.12 -92.71 -0.75 10.00 16 38 H 0.03 1.07 7.65 -2.39 -0.02 1.06 16 39 H 0.03 1.24 8.14 -2.39 -0.02 1.23 16 40 H 0.37 22.31 6.81 -92.71 -0.63 21.68 16 41 H 0.25 15.66 8.31 -92.71 -0.77 14.89 16 42 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.07 1.66 8.13 -2.39 -0.02 1.64 16 44 H 0.05 1.39 8.02 -2.39 -0.02 1.37 16 45 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 46 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 47 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 48 H 0.08 1.14 8.14 -2.39 -0.02 1.13 16 49 H 0.04 1.05 7.84 -2.39 -0.02 1.03 16 50 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 51 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 52 H 0.07 1.95 7.46 -2.39 -0.02 1.93 16 53 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 54 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -76.23 412.24 2.56 -73.67 By element: Atomic # 1 Polarization: 47.32 SS G_CDS: -0.54 Total: 46.78 kcal Atomic # 6 Polarization: -18.14 SS G_CDS: 4.45 Total: -13.70 kcal Atomic # 7 Polarization: -125.41 SS G_CDS: -3.34 Total: -128.75 kcal Atomic # 8 Polarization: -27.87 SS G_CDS: -0.05 Total: -27.92 kcal Atomic # 14 Polarization: 47.88 SS G_CDS: 2.03 Total: 49.90 kcal Total: -76.23 2.56 -73.67 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754654288.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.508 kcal (2) G-P(sol) polarization free energy of solvation -76.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds