Wall clock time and date at job start Tue Mar 31 2020 15:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47120 * 2 1 4 4 C 1.53004 * 109.47108 * 239.99967 * 2 1 3 5 5 C 1.52993 * 109.46876 * 180.02562 * 4 2 1 6 6 C 1.53004 * 109.47353 * 60.00024 * 5 4 2 7 7 C 1.53000 * 109.47145 * 300.00180 * 6 5 4 8 8 H 1.09008 * 109.46951 * 299.99520 * 7 6 5 9 9 C 1.50692 * 109.46874 * 179.97438 * 7 6 5 10 10 O 1.21284 * 119.99898 * 239.99295 * 9 7 6 11 11 N 1.34778 * 120.00502 * 59.99870 * 9 7 6 12 12 C 1.46493 * 120.00144 * 179.97438 * 11 9 7 13 13 C 1.53009 * 109.47254 * 180.02562 * 12 11 9 14 14 C 1.53006 * 109.45396 * 299.97300 * 13 12 11 15 15 C 1.53035 * 109.46206 * 180.02562 * 13 12 11 16 16 C 1.53190 * 109.31186 * 178.62603 * 15 13 12 17 17 N 1.46920 * 108.77534 * 54.63658 * 16 15 13 18 18 C 1.36934 * 120.63327 * 126.37002 * 17 16 15 19 19 H 1.08000 * 120.00008 * 332.44325 * 18 17 16 20 20 C 1.38813 * 120.00453 * 152.44467 * 18 17 16 21 21 N 1.31621 * 119.99625 * 342.77037 * 20 18 17 22 22 Si 1.86796 * 120.00414 * 163.04524 * 20 18 17 23 23 H 1.48499 * 109.47357 * 269.73037 * 22 20 18 24 24 H 1.48499 * 109.46907 * 29.72650 * 22 20 18 25 25 H 1.48491 * 109.47491 * 149.72719 * 22 20 18 26 26 C 1.46931 * 118.73646 * 306.63915 * 17 16 15 27 27 C 1.52755 * 109.00578 * 53.31434 * 26 17 16 28 28 C 1.52994 * 109.47021 * 120.00229 * 2 1 3 29 29 H 1.08996 * 109.47155 * 300.00003 * 1 2 3 30 30 H 1.09003 * 109.46951 * 59.99808 * 1 2 3 31 31 H 1.08999 * 109.47120 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47157 * 300.00010 * 4 2 1 33 33 H 1.09003 * 109.47031 * 60.00274 * 4 2 1 34 34 H 1.09004 * 109.47202 * 180.02562 * 5 4 2 35 35 H 1.09008 * 109.47337 * 300.00140 * 5 4 2 36 36 H 1.09001 * 109.46876 * 179.97438 * 6 5 4 37 37 H 1.08999 * 109.47015 * 59.99802 * 6 5 4 38 38 H 0.97002 * 119.99797 * 0.02562 * 11 9 7 39 39 H 1.08999 * 109.47200 * 59.99972 * 12 11 9 40 40 H 1.09003 * 109.47664 * 299.99419 * 12 11 9 41 41 H 1.08999 * 109.47123 * 300.02255 * 14 13 12 42 42 H 1.08995 * 109.46968 * 60.02645 * 14 13 12 43 43 H 1.09000 * 109.46480 * 180.02562 * 14 13 12 44 44 H 1.09007 * 109.49834 * 58.67161 * 15 13 12 45 45 H 1.09003 * 109.52558 * 298.59742 * 15 13 12 46 46 H 1.09000 * 109.58487 * 294.84366 * 16 15 13 47 47 H 1.09008 * 109.70094 * 174.49089 * 16 15 13 48 48 H 0.97001 * 120.00047 * 179.97438 * 21 20 18 49 49 H 1.09003 * 109.58556 * 173.14475 * 26 17 16 50 50 H 1.08995 * 109.58969 * 293.57184 * 26 17 16 51 51 H 1.08999 * 109.56337 * 185.54912 * 27 26 17 52 52 H 1.08999 * 109.38734 * 65.51450 * 27 26 17 53 53 H 1.08999 * 109.47361 * 59.99918 * 28 2 1 54 54 H 1.09007 * 109.47356 * 300.00169 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5699 -0.7218 -1.2489 6 6 4.0795 -1.4434 0.0004 7 6 3.5694 -0.7222 1.2496 8 1 3.9332 0.3054 1.2499 9 6 4.0707 -1.4334 2.4800 10 8 3.2819 -1.8939 3.2779 11 7 5.3956 -1.5575 2.6938 12 6 5.8829 -2.2484 3.8902 13 6 7.4130 -2.2490 3.8912 14 6 7.9231 -2.9711 2.6424 15 6 7.9218 -2.9713 5.1408 16 6 9.4533 -3.0000 5.1211 17 7 9.9502 -1.6252 4.9745 18 6 10.8575 -1.1128 5.8628 19 1 10.8907 -1.4852 6.8761 20 6 11.7347 -0.1147 5.4612 21 7 11.9388 0.1054 4.1797 22 14 12.6313 0.9108 6.7394 23 1 11.8196 2.1095 7.0704 24 1 12.8404 0.1005 7.9662 25 1 13.9464 1.3376 6.1980 26 6 9.4504 -0.8085 3.8599 27 6 7.9232 -0.8062 3.8906 28 6 2.0400 -0.7213 1.2492 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6767 -1.7489 -1.2493 33 1 1.6767 -0.2074 -2.1393 34 1 3.9334 -1.2353 -2.1391 35 1 3.9337 0.3058 -1.2486 36 1 5.1695 -1.4442 0.0003 37 1 3.7158 -2.4709 0.0002 38 1 6.0265 -1.1888 2.0559 39 1 5.5188 -3.2757 3.8902 40 1 5.5197 -1.7342 4.7801 41 1 7.5588 -3.9985 2.6425 42 1 7.5608 -2.4572 1.7521 43 1 9.0131 -2.9721 2.6432 44 1 7.5388 -3.9918 5.1524 45 1 7.5792 -2.4441 6.0312 46 1 9.7966 -3.6043 4.2813 47 1 9.8249 -3.4254 6.0534 48 1 12.5515 0.8031 3.8990 49 1 9.8181 0.2126 3.9616 50 1 9.7935 -1.2303 2.9153 51 1 7.5413 -0.2856 3.0124 52 1 7.5802 -0.2986 4.7922 53 1 1.6766 -1.7489 1.2492 54 1 1.6766 -0.2075 2.1392 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754718782.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:17:43 Heat of formation + Delta-G solvation = -74.908221 kcal Electronic energy + Delta-G solvation = -28741.534128 eV Core-core repulsion = 25097.150371 eV Total energy + Delta-G solvation = -3644.383758 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.41558 -40.18713 -38.77282 -36.58361 -34.74558 -33.61791 -32.59405 -31.84495 -31.60146 -28.72419 -28.03533 -27.18743 -25.92784 -24.36734 -23.78375 -22.59774 -22.31951 -21.10007 -20.60334 -19.63276 -18.40429 -17.89025 -17.01418 -16.80274 -16.49864 -15.93811 -15.79669 -15.48897 -15.35671 -15.19635 -15.03167 -14.98911 -14.73309 -14.38614 -14.12145 -14.06646 -13.60275 -13.34730 -13.26016 -13.13065 -12.95595 -12.70301 -12.67791 -12.58014 -12.40367 -12.33243 -12.22525 -12.10101 -11.89311 -11.83750 -11.79402 -11.46792 -11.43253 -11.33012 -11.15402 -11.04427 -10.95576 -10.59538 -10.48388 -10.02886 -8.62952 -7.86017 -5.29559 1.45744 1.47490 1.55593 1.66774 2.25798 2.51632 3.27564 3.63460 3.72115 3.72547 3.77504 3.82239 3.87075 3.95613 4.17833 4.19106 4.29999 4.41010 4.43089 4.52149 4.54946 4.57811 4.61886 4.69054 4.72332 4.78004 4.81464 4.84541 4.86569 4.90471 4.96283 5.00292 5.07890 5.11401 5.13755 5.17953 5.21409 5.28043 5.31786 5.32026 5.36440 5.40141 5.40706 5.44282 5.47878 5.51213 5.57497 5.62677 5.67930 5.86037 6.41384 6.58144 7.18017 7.27271 7.90575 8.40709 9.19697 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.021468 B = 0.002546 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.943351 B =10995.434562 C =11344.445953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.089 4.089 3 H 0.076 0.924 4 C -0.114 4.114 5 C -0.115 4.115 6 C -0.107 4.107 7 C -0.101 4.101 8 H 0.111 0.889 9 C 0.512 3.488 10 O -0.588 6.588 11 N -0.714 5.714 12 C 0.141 3.859 13 C -0.053 4.053 14 C -0.135 4.135 15 C -0.113 4.113 16 C 0.143 3.857 17 N -0.610 5.610 18 C -0.260 4.260 19 H 0.061 0.939 20 C -0.049 4.049 21 N -0.931 5.931 22 Si 0.962 3.038 23 H -0.287 1.287 24 H -0.271 1.271 25 H -0.294 1.294 26 C 0.179 3.821 27 C -0.116 4.116 28 C -0.089 4.089 29 H 0.051 0.949 30 H 0.066 0.934 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.059 0.941 38 H 0.410 0.590 39 H 0.066 0.934 40 H 0.049 0.951 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.047 0.953 44 H 0.081 0.919 45 H 0.050 0.950 46 H 0.023 0.977 47 H 0.047 0.953 48 H 0.249 0.751 49 H 0.047 0.953 50 H 0.008 0.992 51 H 0.070 0.930 52 H 0.040 0.960 53 H 0.053 0.947 54 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.534 -1.977 -12.731 23.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.108 4.108 3 H 0.095 0.905 4 C -0.152 4.152 5 C -0.153 4.153 6 C -0.145 4.145 7 C -0.122 4.122 8 H 0.129 0.871 9 C 0.300 3.700 10 O -0.469 6.469 11 N -0.366 5.366 12 C 0.017 3.983 13 C -0.054 4.054 14 C -0.192 4.192 15 C -0.152 4.152 16 C 0.018 3.982 17 N -0.334 5.334 18 C -0.391 4.391 19 H 0.079 0.921 20 C -0.245 4.245 21 N -0.578 5.578 22 Si 0.790 3.210 23 H -0.214 1.214 24 H -0.196 1.196 25 H -0.221 1.221 26 C 0.054 3.946 27 C -0.155 4.155 28 C -0.127 4.127 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.078 0.922 38 H 0.248 0.752 39 H 0.084 0.916 40 H 0.067 0.933 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.066 0.934 44 H 0.099 0.901 45 H 0.069 0.931 46 H 0.041 0.959 47 H 0.066 0.934 48 H 0.058 0.942 49 H 0.065 0.935 50 H 0.026 0.974 51 H 0.088 0.912 52 H 0.059 0.941 53 H 0.072 0.928 54 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -19.951 -2.224 -12.216 23.499 hybrid contribution 1.196 0.771 0.765 1.615 sum -18.755 -1.454 -11.451 22.023 Atomic orbital electron populations 1.21812 0.94771 1.01798 1.02014 1.21146 0.95910 0.99688 0.94025 0.90526 1.21619 0.95543 1.00587 0.97413 1.21529 0.95577 1.01260 0.96911 1.21533 1.01079 0.99136 0.92776 1.21379 0.97763 1.01070 0.92018 0.87100 1.21251 0.81929 0.79080 0.87772 1.90663 1.56361 1.50815 1.49025 1.46068 1.07053 1.58090 1.25424 1.21261 0.92954 0.96816 0.87301 1.20555 0.92431 0.95726 0.96663 1.21855 1.01060 1.00156 0.96142 1.21887 0.96463 1.00242 0.96614 1.21042 0.92826 0.85902 0.98467 1.44283 1.48112 1.09614 1.31367 1.19484 1.09999 1.17907 0.91694 0.92084 1.25699 0.98481 1.02921 0.97377 1.70169 1.38784 1.34022 1.14798 0.85348 0.77391 0.79095 0.79120 1.21423 1.19609 1.22083 1.20502 0.89982 0.95539 0.88605 1.21969 0.97406 0.95617 1.00492 1.21334 0.92474 1.00828 0.98085 0.93026 0.91522 0.93024 0.92385 0.90730 0.90586 0.90903 0.90481 0.92219 0.75232 0.91592 0.93251 0.91690 0.91703 0.93437 0.90084 0.93108 0.95890 0.93442 0.94169 0.93471 0.97362 0.91198 0.94134 0.92835 0.92952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.19 71.98 0.66 -1.19 16 2 C -0.09 -1.20 2.72 -10.79 -0.03 -1.23 16 3 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 4 C -0.11 -1.31 5.20 30.59 0.16 -1.15 16 5 C -0.12 -1.27 5.92 30.59 0.18 -1.09 16 6 C -0.11 -1.52 5.10 30.60 0.16 -1.36 16 7 C -0.10 -1.81 2.53 -11.56 -0.03 -1.84 16 8 H 0.11 1.68 8.14 -2.38 -0.02 1.66 16 9 C 0.51 12.89 7.15 87.65 0.63 13.51 16 10 O -0.59 -19.77 15.98 -3.04 -0.05 -19.82 16 11 N -0.71 -16.58 4.84 -463.06 -2.24 -18.82 16 12 C 0.14 3.78 4.56 86.38 0.39 4.17 16 13 C -0.05 -1.55 0.53 -52.15 -0.03 -1.58 16 14 C -0.13 -3.60 7.54 71.98 0.54 -3.06 16 15 C -0.11 -3.61 4.90 30.67 0.15 -3.46 16 16 C 0.14 5.73 6.05 86.36 0.52 6.26 16 17 N -0.61 -29.96 3.00 -699.94 -2.10 -32.06 16 18 C -0.26 -14.31 9.59 84.03 0.81 -13.50 16 19 H 0.06 3.32 7.88 -2.91 -0.02 3.29 16 20 C -0.05 -2.74 4.91 84.86 0.42 -2.33 16 21 N -0.93 -54.34 11.19 21.65 0.24 -54.09 16 22 Si 0.96 44.97 29.59 68.60 2.03 47.00 16 23 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 24 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 25 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 26 C 0.18 8.21 4.82 86.22 0.42 8.63 16 27 C -0.12 -4.03 4.73 30.53 0.14 -3.89 16 28 C -0.09 -1.66 3.77 30.57 0.12 -1.55 16 29 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 35 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 36 H 0.08 0.97 7.57 -2.39 -0.02 0.95 16 37 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.41 8.00 5.58 -92.71 -0.52 7.48 16 39 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.06 1.45 6.86 -2.39 -0.02 1.44 16 43 H 0.05 1.55 4.99 -2.39 -0.01 1.54 16 44 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 45 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 46 H 0.02 0.92 6.69 -2.39 -0.02 0.91 16 47 H 0.05 1.91 7.93 -2.38 -0.02 1.89 16 48 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 49 H 0.05 2.52 6.04 -2.39 -0.01 2.50 16 50 H 0.01 0.40 6.70 -2.39 -0.02 0.38 16 51 H 0.07 2.06 6.82 -2.39 -0.02 2.05 16 52 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 53 H 0.05 1.16 8.10 -2.39 -0.02 1.14 16 54 H 0.05 1.13 8.10 -2.38 -0.02 1.11 16 Total: -1.00 -66.60 396.99 3.42 -63.18 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: 0.33 Total: 19.27 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: 5.21 Total: -4.65 kcal Atomic # 7 Polarization: -100.88 SS G_CDS: -4.10 Total: -104.98 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: -0.05 Total: -19.82 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -66.60 3.42 -63.18 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754718782.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.732 kcal (2) G-P(sol) polarization free energy of solvation -66.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds