Wall clock time and date at job start Tue Mar 31 2020 15:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09008 * 109.46811 * 2 1 4 4 C 1.53001 * 109.47383 * 119.99603 * 2 1 3 5 5 C 1.52992 * 109.47382 * 180.02562 * 4 2 1 6 6 C 1.52996 * 109.47334 * 300.00311 * 5 4 2 7 7 C 1.53006 * 109.47157 * 59.99881 * 6 5 4 8 8 H 1.08997 * 109.47199 * 180.02562 * 7 6 5 9 9 C 1.50701 * 109.47290 * 59.99990 * 7 6 5 10 10 O 1.21278 * 120.00042 * 240.00511 * 9 7 6 11 11 N 1.34782 * 119.99418 * 59.99907 * 9 7 6 12 12 C 1.46501 * 119.99341 * 179.97438 * 11 9 7 13 13 C 1.53004 * 109.47029 * 180.02562 * 12 11 9 14 14 C 1.53002 * 109.45983 * 60.02806 * 13 12 11 15 15 C 1.53039 * 109.46318 * 180.02562 * 13 12 11 16 16 C 1.53187 * 109.31338 * 181.37534 * 15 13 12 17 17 N 1.46925 * 108.77354 * 305.36020 * 16 15 13 18 18 C 1.36932 * 120.63388 * 233.58661 * 17 16 15 19 19 H 1.08004 * 120.00303 * 152.40441 * 18 17 16 20 20 C 1.38814 * 120.00105 * 332.40286 * 18 17 16 21 21 N 1.31622 * 119.99777 * 334.91017 * 20 18 17 22 22 Si 1.86796 * 120.00195 * 154.90786 * 20 18 17 23 23 H 1.48500 * 109.47229 * 60.00523 * 22 20 18 24 24 H 1.48497 * 109.47426 * 300.00001 * 22 20 18 25 25 H 1.48506 * 109.47169 * 179.97438 * 22 20 18 26 26 C 1.46924 * 118.73854 * 53.86612 * 17 16 15 27 27 C 1.53037 * 109.44921 * 300.06393 * 13 12 11 28 28 C 1.52996 * 109.47597 * 240.00076 * 2 1 3 29 29 H 1.09008 * 109.46811 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47640 * 299.99542 * 1 2 3 31 31 H 1.08999 * 109.47562 * 60.00578 * 1 2 3 32 32 H 1.09006 * 109.46914 * 300.00543 * 4 2 1 33 33 H 1.09003 * 109.46801 * 59.99913 * 4 2 1 34 34 H 1.09008 * 109.47075 * 60.00236 * 5 4 2 35 35 H 1.08999 * 109.47562 * 179.97438 * 5 4 2 36 36 H 1.08999 * 109.47255 * 299.99972 * 6 5 4 37 37 H 1.09003 * 109.47468 * 179.97438 * 6 5 4 38 38 H 0.96991 * 120.00182 * 0.02562 * 11 9 7 39 39 H 1.08997 * 109.47156 * 60.00448 * 12 11 9 40 40 H 1.08996 * 109.47577 * 300.00104 * 12 11 9 41 41 H 1.08995 * 109.47563 * 179.97438 * 14 13 12 42 42 H 1.09005 * 109.47172 * 299.97741 * 14 13 12 43 43 H 1.09001 * 109.46693 * 59.97354 * 14 13 12 44 44 H 1.09000 * 109.49845 * 61.41828 * 15 13 12 45 45 H 1.09005 * 109.51950 * 301.34221 * 15 13 12 46 46 H 1.09003 * 109.58421 * 185.58014 * 16 15 13 47 47 H 1.09000 * 109.70598 * 65.21863 * 16 15 13 48 48 H 0.96999 * 120.00048 * 354.25727 * 21 20 18 49 49 H 1.09000 * 109.59107 * 65.92266 * 26 17 16 50 50 H 1.09002 * 109.59120 * 186.34902 * 26 17 16 51 51 H 1.09001 * 109.49931 * 298.57308 * 27 13 12 52 52 H 1.09004 * 109.49662 * 58.63567 * 27 13 12 53 53 H 1.09004 * 109.47222 * 59.99600 * 28 2 1 54 54 H 1.08999 * 109.47255 * 299.99810 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5700 -0.7206 1.2496 6 6 4.0805 -1.4415 0.0004 7 6 3.5705 -0.7202 -1.2489 8 1 3.9339 -1.2341 -2.1388 9 6 4.0723 0.7008 -1.2486 10 8 3.2838 1.6223 -1.2486 11 7 5.3973 0.9475 -1.2483 12 6 5.8851 2.3289 -1.2486 13 6 7.4151 2.3296 -1.2488 14 6 7.9250 1.6088 -2.4984 15 6 7.9244 3.7727 -1.2485 16 6 9.4559 3.7695 -1.2833 17 7 9.9526 2.9541 -0.1665 18 6 10.8608 3.4660 0.7212 19 1 10.8948 3.0933 1.7344 20 6 11.7379 4.4640 0.3191 21 7 12.0602 4.5841 -0.9514 22 14 12.4606 5.6365 1.5809 23 1 13.2325 4.8653 2.5882 24 1 11.3633 6.3743 2.2567 25 1 13.3614 6.6017 0.9009 26 6 9.4609 1.5770 -0.0239 27 6 7.9251 1.6071 0.0002 28 6 2.0401 -0.7212 -1.2492 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 1.6766 -0.2073 2.1393 33 1 1.6767 -1.7488 1.2493 34 1 3.9329 0.3073 1.2498 35 1 3.9334 -1.2340 2.1398 36 1 3.7176 -2.4693 0.0002 37 1 5.1706 -1.4407 0.0004 38 1 6.0278 0.2105 -1.2486 39 1 5.5213 2.8429 -0.3589 40 1 5.5218 2.8424 -2.1388 41 1 9.0149 1.6095 -2.4990 42 1 7.5623 0.5809 -2.4984 43 1 7.5608 2.1226 -3.3881 44 1 7.5820 4.2792 -0.3460 45 1 7.5416 4.2942 -2.1258 46 1 9.8258 4.7900 -1.1834 47 1 9.8012 3.3463 -2.2266 48 1 11.7521 3.9263 -1.5942 49 1 9.8044 0.9771 -0.8667 50 1 9.8340 1.1502 0.9071 51 1 7.5827 2.1342 0.8908 52 1 7.5423 0.5865 0.0119 53 1 1.6767 -0.2074 -2.1392 54 1 1.6768 -1.7489 -1.2492 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754718783.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:17:47 Heat of formation + Delta-G solvation = -71.769196 kcal Electronic energy + Delta-G solvation = -29302.675917 eV Core-core repulsion = 25658.428278 eV Total energy + Delta-G solvation = -3644.247639 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.66113 -40.37820 -38.38287 -36.77628 -34.87374 -33.58184 -32.65739 -31.89254 -31.47704 -28.63569 -28.09550 -27.18835 -25.87655 -24.34304 -23.86050 -22.76814 -22.35262 -21.47715 -20.47402 -19.88367 -18.78263 -17.58736 -17.07515 -16.65865 -16.30472 -16.11063 -15.92081 -15.52719 -15.37113 -15.28833 -15.19379 -15.05262 -14.65324 -14.50911 -14.30814 -14.13918 -13.43730 -13.31516 -13.22533 -12.97455 -12.94252 -12.91541 -12.67516 -12.64392 -12.52900 -12.39971 -12.33467 -12.00829 -11.92733 -11.84455 -11.70307 -11.63298 -11.48810 -11.20317 -11.08837 -10.98776 -10.91793 -10.45176 -10.42349 -9.98109 -8.89068 -8.23178 -5.37823 1.56937 1.64117 1.73161 1.82862 2.27168 2.65413 3.21493 3.56035 3.66403 3.72539 3.75698 3.78997 3.81585 3.85559 4.07521 4.26136 4.28766 4.30798 4.38707 4.47827 4.50969 4.51915 4.56656 4.64107 4.69308 4.71027 4.74329 4.75713 4.82446 4.83669 4.94672 4.96051 4.96812 5.02542 5.07237 5.08673 5.10877 5.17329 5.21372 5.25016 5.30573 5.32917 5.33341 5.34650 5.41259 5.46246 5.52723 5.60306 5.74743 5.84728 6.41231 6.62111 7.09122 7.34344 7.80415 8.25113 9.01365 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.024831 B = 0.002700 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.346391 B =10368.284563 C =10610.702546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.109 4.109 3 H 0.063 0.937 4 C -0.110 4.110 5 C -0.125 4.125 6 C -0.105 4.105 7 C -0.105 4.105 8 H 0.120 0.880 9 C 0.513 3.487 10 O -0.578 6.578 11 N -0.715 5.715 12 C 0.145 3.855 13 C -0.052 4.052 14 C -0.136 4.136 15 C -0.115 4.115 16 C 0.160 3.840 17 N -0.617 5.617 18 C -0.354 4.354 19 H 0.047 0.953 20 C -0.075 4.075 21 N -0.943 5.943 22 Si 1.110 2.890 23 H -0.276 1.276 24 H -0.283 1.283 25 H -0.292 1.292 26 C 0.143 3.857 27 C -0.107 4.107 28 C -0.089 4.089 29 H 0.066 0.934 30 H 0.048 0.952 31 H 0.046 0.954 32 H 0.051 0.949 33 H 0.077 0.923 34 H 0.033 0.967 35 H 0.074 0.926 36 H 0.097 0.903 37 H 0.076 0.924 38 H 0.410 0.590 39 H 0.047 0.953 40 H 0.060 0.940 41 H 0.045 0.955 42 H 0.075 0.925 43 H 0.057 0.943 44 H 0.045 0.955 45 H 0.069 0.931 46 H 0.037 0.963 47 H 0.014 0.986 48 H 0.255 0.745 49 H 0.027 0.973 50 H 0.044 0.956 51 H 0.044 0.956 52 H 0.085 0.915 53 H 0.052 0.948 54 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.232 -16.087 -0.653 25.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.128 4.128 3 H 0.082 0.918 4 C -0.147 4.147 5 C -0.163 4.163 6 C -0.143 4.143 7 C -0.126 4.126 8 H 0.138 0.862 9 C 0.302 3.698 10 O -0.458 6.458 11 N -0.367 5.367 12 C 0.020 3.980 13 C -0.053 4.053 14 C -0.193 4.193 15 C -0.155 4.155 16 C 0.035 3.965 17 N -0.342 5.342 18 C -0.484 4.484 19 H 0.065 0.935 20 C -0.272 4.272 21 N -0.585 5.585 22 Si 0.935 3.065 23 H -0.201 1.201 24 H -0.210 1.210 25 H -0.218 1.218 26 C 0.018 3.982 27 C -0.146 4.146 28 C -0.127 4.127 29 H 0.085 0.915 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.096 0.904 34 H 0.052 0.948 35 H 0.092 0.908 36 H 0.116 0.884 37 H 0.095 0.905 38 H 0.248 0.752 39 H 0.065 0.935 40 H 0.078 0.922 41 H 0.064 0.936 42 H 0.094 0.906 43 H 0.076 0.924 44 H 0.064 0.936 45 H 0.087 0.913 46 H 0.056 0.944 47 H 0.032 0.968 48 H 0.065 0.935 49 H 0.045 0.955 50 H 0.063 0.937 51 H 0.063 0.937 52 H 0.103 0.897 53 H 0.071 0.929 54 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -19.811 -14.105 -0.432 24.323 hybrid contribution -0.235 -0.953 -0.183 0.998 sum -20.046 -15.058 -0.615 25.080 Atomic orbital electron populations 1.21760 0.94959 1.02007 1.01082 1.21357 0.95836 1.00546 0.95050 0.91850 1.21570 0.95062 1.01042 0.97022 1.21575 0.96240 0.99614 0.98871 1.21562 1.01062 1.00087 0.91596 1.21466 0.97875 0.91195 1.02047 0.86205 1.21234 0.81749 0.92481 0.74374 1.90621 1.55912 1.48125 1.51129 1.46021 1.07209 1.08674 1.74840 1.21141 0.92594 0.83427 1.00826 1.20531 0.92764 0.95510 0.96478 1.21869 1.00914 1.00499 0.96012 1.21917 0.96514 0.96098 1.00921 1.20770 0.91858 0.94781 0.89117 1.44333 1.48545 1.09739 1.31546 1.20203 1.13086 1.22957 0.92179 0.93490 1.27082 0.96007 1.03016 1.01081 1.70899 1.44374 1.39451 1.03751 0.82910 0.75677 0.74876 0.72999 1.20143 1.20958 1.21788 1.21163 0.93222 0.85411 0.98376 1.21963 0.95942 1.00171 0.96486 1.21372 0.92358 1.01296 0.97677 0.91540 0.93266 0.93516 0.93005 0.90403 0.94774 0.90767 0.88404 0.90549 0.75218 0.93473 0.92208 0.93558 0.90627 0.92377 0.93570 0.91252 0.94435 0.96810 0.93503 0.95532 0.93745 0.93737 0.89657 0.92909 0.89188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 9.19 71.98 0.66 -1.65 16 2 C -0.11 -2.08 2.42 -10.80 -0.03 -2.11 16 3 H 0.06 1.71 5.51 -2.38 -0.01 1.70 16 4 C -0.11 -1.75 5.20 30.59 0.16 -1.59 16 5 C -0.13 -2.03 5.70 30.59 0.17 -1.86 16 6 C -0.11 -1.25 5.36 30.59 0.16 -1.09 16 7 C -0.10 -1.55 3.01 -11.52 -0.03 -1.59 16 8 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 9 C 0.51 11.65 5.64 87.66 0.49 12.15 16 10 O -0.58 -18.00 13.66 -3.02 -0.04 -18.04 16 11 N -0.71 -14.94 4.84 -463.06 -2.24 -17.18 16 12 C 0.14 3.82 4.56 86.38 0.39 4.21 16 13 C -0.05 -1.51 0.53 -52.15 -0.03 -1.54 16 14 C -0.14 -3.52 7.54 71.98 0.54 -2.98 16 15 C -0.11 -4.18 4.91 30.67 0.15 -4.03 16 16 C 0.16 7.44 4.22 86.36 0.36 7.80 16 17 N -0.62 -30.38 2.85 -698.26 -1.99 -32.37 16 18 C -0.35 -19.90 9.49 84.03 0.80 -19.10 16 19 H 0.05 2.66 7.94 -2.91 -0.02 2.63 16 20 C -0.08 -4.32 4.68 84.86 0.40 -3.92 16 21 N -0.94 -57.55 12.40 21.65 0.27 -57.28 16 22 Si 1.11 51.50 29.99 68.60 2.06 53.56 16 23 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 24 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 25 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 26 C 0.14 5.62 6.07 86.51 0.53 6.15 16 27 C -0.11 -3.24 4.76 30.82 0.15 -3.10 16 28 C -0.09 -1.42 4.38 30.61 0.13 -1.28 16 29 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 30 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.05 0.88 8.14 -2.38 -0.02 0.87 16 33 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.03 0.75 7.22 -2.38 -0.02 0.73 16 35 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.08 0.79 7.56 -2.39 -0.02 0.77 16 38 H 0.41 6.61 5.57 -92.71 -0.52 6.09 16 39 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.05 1.46 4.97 -2.39 -0.01 1.45 16 42 H 0.07 1.49 6.86 -2.38 -0.02 1.47 16 43 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 45 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 46 H 0.04 2.02 6.29 -2.39 -0.02 2.01 16 47 H 0.01 0.66 6.43 -2.39 -0.02 0.64 16 48 H 0.26 15.75 6.71 -92.71 -0.62 15.13 16 49 H 0.03 1.02 6.69 -2.39 -0.02 1.00 16 50 H 0.04 1.79 7.93 -2.39 -0.02 1.77 16 51 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 52 H 0.09 1.96 6.82 -2.38 -0.02 1.94 16 53 H 0.05 0.99 8.10 -2.38 -0.02 0.97 16 54 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -69.99 389.47 3.56 -66.42 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: 0.49 Total: 20.40 kcal Atomic # 6 Polarization: -20.53 SS G_CDS: 5.02 Total: -15.52 kcal Atomic # 7 Polarization: -102.87 SS G_CDS: -3.96 Total: -106.83 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: -0.04 Total: -18.04 kcal Atomic # 14 Polarization: 51.50 SS G_CDS: 2.06 Total: 53.56 kcal Total: -69.99 3.56 -66.42 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754718783.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.346 kcal (2) G-P(sol) polarization free energy of solvation -69.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds