Wall clock time and date at job start Tue Mar 31 2020 15:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09008 * 109.46767 * 2 1 4 4 C 1.52999 * 109.47188 * 240.00212 * 2 1 3 5 5 C 1.52998 * 109.46824 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.47397 * 59.99701 * 5 4 2 7 7 C 1.53001 * 109.47057 * 299.99768 * 6 5 4 8 8 H 1.08994 * 109.46809 * 180.02562 * 7 6 5 9 9 C 1.50703 * 109.47182 * 300.00174 * 7 6 5 10 10 O 1.21276 * 119.99842 * 119.99544 * 9 7 6 11 11 N 1.34782 * 119.99926 * 300.00206 * 9 7 6 12 12 C 1.46499 * 120.00030 * 179.97438 * 11 9 7 13 13 C 1.52998 * 109.47456 * 179.97438 * 12 11 9 14 14 C 1.53002 * 109.45496 * 60.02997 * 13 12 11 15 15 C 1.53041 * 109.45985 * 300.07521 * 13 12 11 16 16 C 1.53197 * 109.31050 * 178.61417 * 15 13 12 17 17 N 1.46918 * 108.77866 * 54.62933 * 16 15 13 18 18 C 1.36930 * 120.63237 * 126.41447 * 17 16 15 19 19 H 1.08001 * 120.00426 * 207.66755 * 18 17 16 20 20 C 1.38815 * 120.00017 * 27.66390 * 18 17 16 21 21 N 1.31617 * 119.99672 * 17.36574 * 20 18 17 22 22 Si 1.86800 * 120.00297 * 197.37023 * 20 18 17 23 23 H 1.48500 * 109.47188 * 89.99580 * 22 20 18 24 24 H 1.48493 * 109.47394 * 209.99856 * 22 20 18 25 25 H 1.48505 * 109.46845 * 329.99982 * 22 20 18 26 26 C 1.46933 * 118.74014 * 306.39449 * 17 16 15 27 27 C 1.53036 * 109.46039 * 179.97438 * 13 12 11 28 28 C 1.52997 * 109.47097 * 119.99284 * 2 1 3 29 29 H 1.09005 * 109.46899 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47378 * 300.00223 * 1 2 3 31 31 H 1.08990 * 109.47382 * 60.00205 * 1 2 3 32 32 H 1.08990 * 109.47299 * 59.99532 * 4 2 1 33 33 H 1.09005 * 109.46604 * 299.99449 * 4 2 1 34 34 H 1.09008 * 109.46916 * 179.97438 * 5 4 2 35 35 H 1.09005 * 109.47023 * 299.99122 * 5 4 2 36 36 H 1.08995 * 109.47178 * 60.00410 * 6 5 4 37 37 H 1.09003 * 109.47009 * 180.02562 * 6 5 4 38 38 H 0.96999 * 120.00193 * 0.02562 * 11 9 7 39 39 H 1.09002 * 109.47234 * 300.00572 * 12 11 9 40 40 H 1.09008 * 109.46903 * 59.99829 * 12 11 9 41 41 H 1.08998 * 109.47214 * 60.00264 * 14 13 12 42 42 H 1.08996 * 109.46922 * 180.02562 * 14 13 12 43 43 H 1.09003 * 109.47143 * 299.99742 * 14 13 12 44 44 H 1.08995 * 109.49534 * 298.55735 * 15 13 12 45 45 H 1.08996 * 109.50014 * 58.65958 * 15 13 12 46 46 H 1.09005 * 109.57903 * 294.84045 * 16 15 13 47 47 H 1.08997 * 109.58724 * 174.42115 * 16 15 13 48 48 H 0.97000 * 119.99772 * 180.02562 * 21 20 18 49 49 H 1.09000 * 109.58502 * 293.82176 * 26 17 16 50 50 H 1.08999 * 109.70141 * 173.46475 * 26 17 16 51 51 H 1.09000 * 109.50235 * 301.34018 * 27 13 12 52 52 H 1.08999 * 109.49656 * 61.44342 * 27 13 12 53 53 H 1.09003 * 109.47014 * 60.01090 * 28 2 1 54 54 H 1.08995 * 109.48098 * 300.00256 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7217 -1.2488 6 6 4.0795 -1.4433 0.0004 7 6 3.5695 -0.7220 1.2496 8 1 3.9328 -1.2358 2.1395 9 6 4.0723 0.6987 1.2499 10 8 3.2844 1.6207 1.2497 11 7 5.3975 0.9445 1.2501 12 6 5.8862 2.3256 1.2498 13 6 7.4162 2.3252 1.2508 14 6 7.9265 1.6038 0.0018 15 6 7.9250 1.6025 2.5002 16 6 9.4566 1.5737 2.4804 17 7 9.9536 2.9485 2.3340 18 6 10.8617 3.4604 3.2219 19 1 10.8952 4.5238 3.4075 20 6 11.7393 2.6125 3.8835 21 7 11.9449 1.3941 3.4300 22 14 12.6284 3.2005 5.4175 23 1 11.8104 2.8838 6.6158 24 1 13.9427 2.5170 5.5206 25 1 12.8388 4.6683 5.3357 26 6 9.4580 3.7637 1.2165 27 6 7.9265 3.7680 1.2499 28 6 2.0400 -0.7211 1.2493 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8899 32 1 1.6767 -0.2074 -2.1392 33 1 1.6767 -1.7489 -1.2492 34 1 3.9334 -1.2359 -2.1387 35 1 3.9337 0.3059 -1.2487 36 1 3.7159 -2.4708 0.0002 37 1 5.1695 -1.4432 0.0009 38 1 6.0276 0.2071 1.2498 39 1 5.5232 2.8393 0.3596 40 1 5.5228 2.8398 2.1396 41 1 7.5638 2.1178 -0.8883 42 1 9.0164 1.6029 0.0025 43 1 7.5627 0.5762 0.0016 44 1 7.5827 2.1301 3.3904 45 1 7.5421 0.5821 2.5116 46 1 9.7998 0.9697 1.6405 47 1 9.8262 1.1490 3.4137 48 1 12.5579 0.8015 3.8926 49 1 9.8014 3.3383 0.2735 50 1 9.8286 4.7842 1.3134 51 1 7.5446 4.2884 0.3716 52 1 7.5841 4.2755 2.1517 53 1 1.6768 -1.7488 1.2493 54 1 1.6767 -0.2073 2.1393 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754718784.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:17:52 Heat of formation + Delta-G solvation = -68.411633 kcal Electronic energy + Delta-G solvation = -29243.367428 eV Core-core repulsion = 25599.265383 eV Total energy + Delta-G solvation = -3644.102045 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.62214 -40.24439 -38.32492 -36.53744 -34.79073 -33.57576 -32.51824 -31.83500 -31.57537 -28.71421 -28.01895 -27.16275 -25.92163 -24.28337 -23.76952 -22.73993 -22.30070 -21.44074 -20.43939 -19.59994 -18.26132 -17.53547 -17.01056 -16.77527 -16.65422 -16.03744 -15.75515 -15.52551 -15.28599 -15.17586 -15.02126 -14.98822 -14.54248 -14.34526 -14.18443 -14.00120 -13.45285 -13.23530 -13.15176 -13.00423 -12.96156 -12.88639 -12.67238 -12.64024 -12.57553 -12.33395 -12.31542 -12.22574 -11.89309 -11.81174 -11.79585 -11.50942 -11.43569 -11.12544 -11.03824 -10.96673 -10.89771 -10.48824 -10.40739 -9.93200 -8.63092 -7.86159 -5.29605 1.45625 1.47449 1.55518 1.75564 2.32128 2.51528 3.27431 3.68780 3.72785 3.79154 3.82173 3.84500 3.88072 3.96314 4.10474 4.28286 4.30826 4.42943 4.51436 4.52262 4.54635 4.62269 4.66024 4.71824 4.73420 4.80489 4.84611 4.85559 4.86654 4.95952 4.96549 4.98974 5.07752 5.09778 5.12023 5.14281 5.19407 5.28676 5.32282 5.35081 5.35410 5.40810 5.43326 5.47949 5.50913 5.53676 5.58475 5.67876 5.77228 5.86080 6.41266 6.64516 7.17904 7.36054 7.90452 8.40663 9.19463 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.026336 B = 0.002651 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.935622 B =10561.078630 C =10669.490500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.108 4.108 3 H 0.066 0.934 4 C -0.109 4.109 5 C -0.123 4.123 6 C -0.106 4.106 7 C -0.108 4.108 8 H 0.113 0.887 9 C 0.514 3.486 10 O -0.577 6.577 11 N -0.717 5.717 12 C 0.143 3.857 13 C -0.053 4.053 14 C -0.134 4.134 15 C -0.115 4.115 16 C 0.179 3.821 17 N -0.610 5.610 18 C -0.261 4.261 19 H 0.061 0.939 20 C -0.049 4.049 21 N -0.931 5.931 22 Si 0.962 3.038 23 H -0.287 1.287 24 H -0.294 1.294 25 H -0.271 1.271 26 C 0.143 3.857 27 C -0.112 4.112 28 C -0.090 4.090 29 H 0.064 0.936 30 H 0.044 0.956 31 H 0.051 0.949 32 H 0.055 0.945 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.038 0.962 36 H 0.095 0.905 37 H 0.074 0.926 38 H 0.408 0.592 39 H 0.063 0.937 40 H 0.048 0.952 41 H 0.063 0.937 42 H 0.046 0.954 43 H 0.064 0.936 44 H 0.040 0.960 45 H 0.069 0.931 46 H 0.008 0.992 47 H 0.047 0.953 48 H 0.249 0.751 49 H 0.023 0.977 50 H 0.047 0.953 51 H 0.080 0.920 52 H 0.050 0.950 53 H 0.087 0.913 54 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.700 -8.120 -9.194 23.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.127 4.127 3 H 0.084 0.916 4 C -0.147 4.147 5 C -0.161 4.161 6 C -0.144 4.144 7 C -0.129 4.129 8 H 0.130 0.870 9 C 0.303 3.697 10 O -0.457 6.457 11 N -0.369 5.369 12 C 0.019 3.981 13 C -0.054 4.054 14 C -0.191 4.191 15 C -0.154 4.154 16 C 0.054 3.946 17 N -0.333 5.333 18 C -0.391 4.391 19 H 0.079 0.921 20 C -0.245 4.245 21 N -0.578 5.578 22 Si 0.790 3.210 23 H -0.214 1.214 24 H -0.221 1.221 25 H -0.196 1.196 26 C 0.018 3.982 27 C -0.152 4.152 28 C -0.127 4.127 29 H 0.083 0.917 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.057 0.943 36 H 0.113 0.887 37 H 0.093 0.907 38 H 0.246 0.754 39 H 0.082 0.918 40 H 0.066 0.934 41 H 0.082 0.918 42 H 0.065 0.935 43 H 0.083 0.917 44 H 0.059 0.941 45 H 0.088 0.912 46 H 0.026 0.974 47 H 0.065 0.935 48 H 0.058 0.942 49 H 0.040 0.960 50 H 0.065 0.935 51 H 0.098 0.902 52 H 0.069 0.931 53 H 0.106 0.894 54 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -20.126 -7.552 -9.143 23.360 hybrid contribution 1.261 0.275 1.075 1.680 sum -18.865 -7.276 -8.068 21.770 Atomic orbital electron populations 1.21759 0.94970 1.01945 1.01133 1.21352 0.95802 1.00636 0.94889 0.91564 1.21567 0.95105 1.00961 0.97019 1.21567 0.96170 0.99777 0.98556 1.21558 1.00990 1.00035 0.91789 1.21452 0.97970 0.91483 1.01964 0.86950 1.21157 0.81781 0.92363 0.74434 1.90607 1.55895 1.47943 1.51262 1.46081 1.07167 1.09003 1.74656 1.21206 0.92793 0.83149 1.00923 1.20551 0.92573 0.96282 0.95977 1.21844 1.00989 1.00125 0.96152 1.22035 0.97341 0.99433 0.96617 1.20595 0.89974 0.85113 0.98924 1.44292 1.48172 1.12054 1.28824 1.19487 1.09981 0.92835 1.16844 0.92087 1.25700 0.98464 0.97325 1.02966 1.70166 1.38723 1.08696 1.40187 0.85349 0.77368 0.77946 0.80293 1.21418 1.22073 1.19616 1.21036 0.92872 0.94508 0.89825 1.21883 0.96444 0.95316 1.01521 1.21351 0.92270 1.01235 0.97881 0.91695 0.93656 0.92979 0.92585 0.90640 0.90538 0.94294 0.88672 0.90725 0.75437 0.91822 0.93363 0.91804 0.93512 0.91726 0.94141 0.91221 0.97365 0.93460 0.94157 0.95954 0.93475 0.90171 0.93143 0.89416 0.93136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.19 71.98 0.66 -1.66 16 2 C -0.11 -2.07 2.43 -10.79 -0.03 -2.10 16 3 H 0.07 1.76 5.51 -2.38 -0.01 1.74 16 4 C -0.11 -1.69 5.20 30.59 0.16 -1.53 16 5 C -0.12 -1.92 5.70 30.59 0.17 -1.75 16 6 C -0.11 -1.39 5.36 30.59 0.16 -1.23 16 7 C -0.11 -1.82 3.01 -11.56 -0.03 -1.85 16 8 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 9 C 0.51 12.42 5.64 87.66 0.49 12.92 16 10 O -0.58 -18.30 13.66 -3.02 -0.04 -18.34 16 11 N -0.72 -16.35 4.84 -463.05 -2.24 -18.59 16 12 C 0.14 3.82 4.56 86.38 0.39 4.22 16 13 C -0.05 -1.56 0.53 -52.16 -0.03 -1.59 16 14 C -0.13 -3.59 7.54 71.98 0.54 -3.05 16 15 C -0.12 -4.01 4.75 30.67 0.15 -3.87 16 16 C 0.18 8.23 4.84 86.37 0.42 8.65 16 17 N -0.61 -29.98 3.00 -699.09 -2.09 -32.07 16 18 C -0.26 -14.36 9.59 84.04 0.81 -13.55 16 19 H 0.06 3.32 7.89 -2.91 -0.02 3.30 16 20 C -0.05 -2.73 4.91 84.86 0.42 -2.31 16 21 N -0.93 -54.36 11.19 21.65 0.24 -54.12 16 22 Si 0.96 44.99 29.59 68.60 2.03 47.02 16 23 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 24 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 25 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 26 C 0.14 5.75 6.04 86.36 0.52 6.27 16 27 C -0.11 -3.61 4.91 30.67 0.15 -3.46 16 28 C -0.09 -1.55 4.37 30.58 0.13 -1.42 16 29 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 30 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 34 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 35 H 0.04 0.80 7.22 -2.38 -0.02 0.78 16 36 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.07 0.89 7.56 -2.39 -0.02 0.88 16 38 H 0.41 7.93 5.57 -92.71 -0.52 7.42 16 39 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 41 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.05 1.53 4.98 -2.39 -0.01 1.52 16 43 H 0.06 1.46 6.86 -2.39 -0.02 1.44 16 44 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.07 2.06 6.82 -2.39 -0.02 2.04 16 46 H 0.01 0.40 6.69 -2.38 -0.02 0.38 16 47 H 0.05 2.52 6.04 -2.39 -0.01 2.51 16 48 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 49 H 0.02 0.90 6.69 -2.39 -0.02 0.88 16 50 H 0.05 1.90 7.94 -2.39 -0.02 1.88 16 51 H 0.08 2.15 8.14 -2.39 -0.02 2.14 16 52 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 53 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 54 H 0.05 1.04 8.10 -2.39 -0.02 1.02 16 Total: -1.00 -66.11 390.46 3.33 -62.78 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: 0.34 Total: 20.62 kcal Atomic # 6 Polarization: -12.39 SS G_CDS: 5.09 Total: -7.30 kcal Atomic # 7 Polarization: -100.69 SS G_CDS: -4.09 Total: -104.78 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: -0.04 Total: -18.34 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -66.11 3.33 -62.78 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754718784.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.637 kcal (2) G-P(sol) polarization free energy of solvation -66.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds