Wall clock time and date at job start Tue Mar 31 2020 15:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46799 * 2 1 4 4 C 1.52998 * 109.47060 * 119.99741 * 2 1 3 5 5 C 1.52996 * 109.47600 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.46684 * 300.00333 * 5 4 2 7 7 C 1.53003 * 109.47234 * 59.99817 * 6 5 4 8 8 H 1.09000 * 109.47240 * 60.00008 * 7 6 5 9 9 C 1.50706 * 109.46730 * 180.02562 * 7 6 5 10 10 O 1.21283 * 119.99974 * 120.00179 * 9 7 6 11 11 N 1.34775 * 120.00045 * 299.99524 * 9 7 6 12 12 C 1.46500 * 120.00083 * 180.02562 * 11 9 7 13 13 C 1.52993 * 109.47287 * 180.02562 * 12 11 9 14 14 C 1.52998 * 109.46492 * 59.99547 * 13 12 11 15 15 C 1.53044 * 109.45740 * 300.02506 * 13 12 11 16 16 C 1.53196 * 109.31263 * 178.60207 * 15 13 12 17 17 N 1.46932 * 108.76384 * 54.65577 * 16 15 13 18 18 C 1.36937 * 120.62901 * 126.40782 * 17 16 15 19 19 H 1.07995 * 120.00008 * 331.81941 * 18 17 16 20 20 C 1.38812 * 119.99607 * 151.82599 * 18 17 16 21 21 N 1.31621 * 120.00158 * 343.06889 * 20 18 17 22 22 Si 1.86799 * 119.99772 * 163.07398 * 20 18 17 23 23 H 1.48504 * 109.47394 * 89.99652 * 22 20 18 24 24 H 1.48507 * 109.47137 * 209.99765 * 22 20 18 25 25 H 1.48495 * 109.47306 * 329.99391 * 22 20 18 26 26 C 1.46924 * 118.73613 * 306.37961 * 17 16 15 27 27 C 1.53042 * 109.46318 * 179.97438 * 13 12 11 28 28 C 1.52994 * 109.47254 * 239.99846 * 2 1 3 29 29 H 1.09000 * 109.47314 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47163 * 300.00100 * 1 2 3 31 31 H 1.09000 * 109.46605 * 59.99947 * 1 2 3 32 32 H 1.09000 * 109.47263 * 300.00099 * 4 2 1 33 33 H 1.08997 * 109.47411 * 59.99738 * 4 2 1 34 34 H 1.08997 * 109.47849 * 180.02562 * 5 4 2 35 35 H 1.08997 * 109.47047 * 59.99399 * 5 4 2 36 36 H 1.09000 * 109.47347 * 299.99260 * 6 5 4 37 37 H 1.09007 * 109.47144 * 179.97438 * 6 5 4 38 38 H 0.97004 * 119.99915 * 0.02562 * 11 9 7 39 39 H 1.09000 * 109.46807 * 300.00085 * 12 11 9 40 40 H 1.08997 * 109.47088 * 59.99607 * 12 11 9 41 41 H 1.09003 * 109.46710 * 59.99964 * 14 13 12 42 42 H 1.08998 * 109.47533 * 180.02562 * 14 13 12 43 43 H 1.08998 * 109.47124 * 300.00495 * 14 13 12 44 44 H 1.09004 * 109.49868 * 298.56548 * 15 13 12 45 45 H 1.08998 * 109.49797 * 58.66257 * 15 13 12 46 46 H 1.08999 * 109.60121 * 294.86762 * 16 15 13 47 47 H 1.08995 * 109.70620 * 174.50188 * 16 15 13 48 48 H 0.97000 * 119.99988 * 180.02562 * 21 20 18 49 49 H 1.08992 * 109.59298 * 293.82555 * 26 17 16 50 50 H 1.09000 * 109.70367 * 173.46702 * 26 17 16 51 51 H 1.08996 * 109.49861 * 301.33917 * 27 13 12 52 52 H 1.09003 * 109.49319 * 61.39569 * 27 13 12 53 53 H 1.08997 * 109.46952 * 59.99794 * 28 2 1 54 54 H 1.09000 * 109.46998 * 300.00240 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5700 -0.7207 1.2497 6 6 4.0805 -1.4416 0.0004 7 6 3.5705 -0.7203 -1.2488 8 1 3.9335 0.3074 -1.2486 9 6 4.0729 -1.4309 -2.4793 10 8 3.2848 -1.8918 -3.2776 11 7 5.3980 -1.5540 -2.6925 12 6 5.8863 -2.2443 -3.8889 13 6 7.4162 -2.2449 -3.8885 14 6 7.9255 -2.9669 -2.6394 15 6 7.9267 -0.8021 -3.8871 16 6 9.4582 -0.8066 -3.8514 17 7 9.9546 -1.6209 -4.9692 18 6 10.8636 -1.1084 -5.8559 19 1 10.8920 -0.0458 -6.0466 20 6 11.7484 -1.9549 -6.5098 21 7 11.9522 -3.1729 -6.0544 22 14 12.6498 -1.3653 -8.0359 23 1 13.9345 -0.7345 -7.6394 24 1 12.9205 -2.5209 -8.9285 25 1 11.8112 -0.3717 -8.7533 26 6 9.4577 -2.9956 -5.1169 27 6 7.9262 -2.9666 -5.1381 28 6 2.0401 -0.7212 -1.2492 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3632 0.5139 -0.8900 32 1 1.6767 -0.2073 2.1392 33 1 1.6767 -1.7488 1.2494 34 1 3.9333 -1.2349 2.1394 35 1 3.9330 0.3071 1.2498 36 1 3.7176 -2.4694 0.0002 37 1 5.1705 -1.4409 0.0005 38 1 6.0283 -1.1856 -2.0538 39 1 5.5229 -3.2719 -3.8892 40 1 5.5230 -1.7302 -4.7787 41 1 7.5616 -3.9944 -2.6400 42 1 9.0154 -2.9671 -2.6388 43 1 7.5620 -2.4534 -1.7494 44 1 7.5851 -0.2944 -4.7891 45 1 7.5440 -0.2817 -3.0091 46 1 9.8008 -1.2327 -2.9085 47 1 9.8310 0.2130 -3.9484 48 1 12.5708 -3.7642 -6.5111 49 1 9.8001 -3.6002 -4.2772 50 1 9.8279 -3.4220 -6.0492 51 1 7.5431 -3.9869 -5.1507 52 1 7.5840 -2.4386 -6.0282 53 1 1.6767 -0.2075 -2.1391 54 1 1.6767 -1.7489 -1.2491 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754718785.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:17:57 Heat of formation + Delta-G solvation = -74.979229 kcal Electronic energy + Delta-G solvation = -28660.641627 eV Core-core repulsion = 25016.254790 eV Total energy + Delta-G solvation = -3644.386837 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -41.40921 -40.17632 -38.76360 -36.59275 -34.70763 -33.59643 -32.71573 -31.87026 -31.44112 -28.73087 -28.04214 -27.18253 -25.92935 -24.40825 -23.72537 -22.58302 -22.34410 -21.10645 -20.59282 -19.62440 -18.40669 -17.87044 -17.06703 -16.75185 -16.47883 -15.93133 -15.79447 -15.50686 -15.34923 -15.16171 -15.01346 -14.95095 -14.77509 -14.43106 -14.11798 -14.07498 -13.60303 -13.36896 -13.25910 -13.00540 -12.99654 -12.70090 -12.69063 -12.55225 -12.38137 -12.35947 -12.19643 -12.09351 -11.92052 -11.82765 -11.80862 -11.50091 -11.42609 -11.31944 -11.14650 -11.03091 -10.94433 -10.59875 -10.47660 -10.03230 -8.62124 -7.86084 -5.29987 1.45057 1.47336 1.56302 1.67961 2.25404 2.51600 3.28224 3.64435 3.72372 3.73132 3.78561 3.82300 3.85429 3.96631 4.18647 4.20171 4.31372 4.40614 4.43595 4.53607 4.56114 4.57432 4.60826 4.70214 4.74377 4.79949 4.81448 4.83292 4.84046 4.91371 4.97956 5.00986 5.06919 5.12948 5.14319 5.18900 5.22610 5.24431 5.33002 5.33151 5.37417 5.40735 5.41241 5.45384 5.48972 5.51733 5.57110 5.63788 5.67421 5.84729 6.41390 6.60140 7.17632 7.29422 7.90617 8.41076 9.19730 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.031602 B = 0.002343 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.810648 B =11946.235421 C =12079.415799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.088 4.088 3 H 0.079 0.921 4 C -0.115 4.115 5 C -0.114 4.114 6 C -0.108 4.108 7 C -0.099 4.099 8 H 0.116 0.884 9 C 0.511 3.489 10 O -0.590 6.590 11 N -0.711 5.711 12 C 0.141 3.859 13 C -0.052 4.052 14 C -0.135 4.135 15 C -0.109 4.109 16 C 0.141 3.859 17 N -0.610 5.610 18 C -0.260 4.260 19 H 0.063 0.937 20 C -0.051 4.051 21 N -0.933 5.933 22 Si 0.962 3.038 23 H -0.284 1.284 24 H -0.294 1.294 25 H -0.273 1.273 26 C 0.181 3.819 27 C -0.120 4.120 28 C -0.090 4.090 29 H 0.049 0.951 30 H 0.066 0.934 31 H 0.051 0.949 32 H 0.074 0.926 33 H 0.055 0.945 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.056 0.944 37 H 0.080 0.920 38 H 0.412 0.588 39 H 0.058 0.942 40 H 0.050 0.950 41 H 0.054 0.946 42 H 0.047 0.953 43 H 0.073 0.927 44 H 0.046 0.954 45 H 0.084 0.916 46 H 0.025 0.975 47 H 0.048 0.952 48 H 0.249 0.751 49 H 0.007 0.993 50 H 0.046 0.954 51 H 0.064 0.936 52 H 0.045 0.955 53 H 0.052 0.948 54 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.426 5.966 17.172 26.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.107 4.107 3 H 0.097 0.903 4 C -0.153 4.153 5 C -0.152 4.152 6 C -0.146 4.146 7 C -0.120 4.120 8 H 0.134 0.866 9 C 0.299 3.701 10 O -0.471 6.471 11 N -0.364 5.364 12 C 0.017 3.983 13 C -0.053 4.053 14 C -0.192 4.192 15 C -0.148 4.148 16 C 0.016 3.984 17 N -0.333 5.333 18 C -0.390 4.390 19 H 0.081 0.919 20 C -0.247 4.247 21 N -0.579 5.579 22 Si 0.791 3.209 23 H -0.211 1.211 24 H -0.220 1.220 25 H -0.199 1.199 26 C 0.056 3.944 27 C -0.160 4.160 28 C -0.128 4.128 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.074 0.926 37 H 0.098 0.902 38 H 0.250 0.750 39 H 0.076 0.924 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.066 0.934 43 H 0.092 0.908 44 H 0.065 0.935 45 H 0.103 0.897 46 H 0.043 0.957 47 H 0.067 0.933 48 H 0.058 0.942 49 H 0.025 0.975 50 H 0.064 0.936 51 H 0.083 0.917 52 H 0.064 0.936 53 H 0.071 0.929 54 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -19.858 5.533 16.544 26.432 hybrid contribution 1.160 -0.082 -1.194 1.667 sum -18.698 5.451 15.350 24.798 Atomic orbital electron populations 1.21819 0.94931 1.01704 1.02018 1.21141 0.95791 0.99777 0.93963 0.90263 1.21626 0.95738 1.00477 0.97433 1.21523 0.95400 1.01388 0.96866 1.21547 1.01235 0.99014 0.92795 1.21396 0.97568 1.01235 0.91827 0.86605 1.21312 0.81942 0.79079 0.87800 1.90673 1.56509 1.50785 1.49095 1.46018 1.07035 1.58091 1.25253 1.21215 0.92987 0.96607 0.87472 1.20535 0.92351 0.96255 0.96149 1.21858 1.01095 0.99963 0.96300 1.21922 0.96288 0.95126 1.01463 1.21089 0.93014 0.94499 0.89807 1.44282 1.48112 1.11922 1.29028 1.19468 1.09547 0.92941 1.17074 0.91928 1.25744 0.98574 0.97303 1.03047 1.70169 1.38403 1.08801 1.40552 0.85357 0.78561 0.77028 0.79986 1.21064 1.22006 1.19855 1.20533 0.89672 0.85357 0.98865 1.22022 0.97631 0.99485 0.96834 1.21359 0.92675 1.00703 0.98111 0.93207 0.91501 0.93024 0.90733 0.92632 0.90646 0.90577 0.92555 0.90155 0.74988 0.92354 0.93178 0.92691 0.93388 0.90768 0.93479 0.89718 0.95692 0.93334 0.94215 0.97510 0.93568 0.91734 0.93621 0.92948 0.93115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.19 71.98 0.66 -1.10 16 2 C -0.09 -1.09 2.72 -10.79 -0.03 -1.12 16 3 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 4 C -0.12 -1.20 5.20 30.59 0.16 -1.05 16 5 C -0.11 -1.08 5.92 30.59 0.18 -0.90 16 6 C -0.11 -1.36 5.10 30.60 0.16 -1.21 16 7 C -0.10 -1.61 2.53 -11.52 -0.03 -1.64 16 8 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 9 C 0.51 12.29 7.15 87.66 0.63 12.91 16 10 O -0.59 -19.70 15.98 -3.04 -0.05 -19.75 16 11 N -0.71 -15.38 4.84 -463.07 -2.24 -17.63 16 12 C 0.14 3.82 4.56 86.38 0.39 4.22 16 13 C -0.05 -1.53 0.53 -52.16 -0.03 -1.56 16 14 C -0.14 -3.61 7.54 71.98 0.54 -3.07 16 15 C -0.11 -3.29 4.75 30.67 0.15 -3.14 16 16 C 0.14 5.47 6.05 86.36 0.52 5.99 16 17 N -0.61 -29.91 2.99 -699.11 -2.09 -32.01 16 18 C -0.26 -14.26 9.58 84.03 0.81 -13.45 16 19 H 0.06 3.37 7.88 -2.91 -0.02 3.34 16 20 C -0.05 -2.88 4.92 84.86 0.42 -2.46 16 21 N -0.93 -55.12 11.19 21.65 0.24 -54.88 16 22 Si 0.96 45.17 29.59 68.60 2.03 47.20 16 23 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 24 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 25 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 26 C 0.18 8.56 4.83 86.36 0.42 8.98 16 27 C -0.12 -4.43 4.91 30.67 0.15 -4.28 16 28 C -0.09 -1.60 3.77 30.61 0.12 -1.49 16 29 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.08 0.83 7.56 -2.38 -0.02 0.81 16 38 H 0.41 6.78 5.57 -92.71 -0.52 6.27 16 39 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.05 1.57 4.98 -2.39 -0.01 1.56 16 43 H 0.07 1.50 6.86 -2.39 -0.02 1.48 16 44 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 45 H 0.08 1.92 6.82 -2.39 -0.02 1.91 16 46 H 0.03 0.96 6.69 -2.39 -0.02 0.94 16 47 H 0.05 1.88 7.93 -2.39 -0.02 1.86 16 48 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 49 H 0.01 0.34 6.69 -2.39 -0.02 0.32 16 50 H 0.05 2.53 6.07 -2.39 -0.01 2.52 16 51 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 52 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 53 H 0.05 1.09 8.10 -2.39 -0.02 1.07 16 54 H 0.05 1.08 8.10 -2.39 -0.02 1.06 16 Total: -1.00 -68.02 397.02 3.43 -64.59 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: 0.33 Total: 16.83 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: 5.21 Total: -4.36 kcal Atomic # 7 Polarization: -100.42 SS G_CDS: -4.09 Total: -104.51 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: -0.05 Total: -19.75 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -68.02 3.43 -64.59 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754718785.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.393 kcal (2) G-P(sol) polarization free energy of solvation -68.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds