Wall clock time and date at job start Tue Mar 31 2020 15:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 110.43778 * 2 1 4 4 C 1.54891 * 110.48568 * 122.53934 * 2 1 3 5 5 C 1.54888 * 102.75188 * 156.61986 * 4 2 1 6 6 C 1.54269 * 104.19241 * 322.05985 * 5 4 2 7 7 C 1.53000 * 110.03094 * 142.89692 * 6 5 4 8 8 C 1.50701 * 110.02779 * 264.32229 * 6 5 4 9 9 O 1.21274 * 120.00440 * 7.03753 * 8 6 5 10 10 N 1.34781 * 119.99960 * 187.03914 * 8 6 5 11 11 C 1.46497 * 120.00463 * 180.02562 * 10 8 6 12 12 C 1.53778 * 113.61203 * 254.13841 * 11 10 8 13 13 C 1.54048 * 86.98451 * 270.83168 * 12 11 10 14 14 C 1.53005 * 113.69894 * 220.00910 * 13 12 11 15 15 N 1.46499 * 109.47125 * 272.53740 * 14 13 12 16 16 C 1.36934 * 119.99495 * 180.02562 * 15 14 13 17 17 H 1.08003 * 120.00481 * 359.97438 * 16 15 14 18 18 C 1.38820 * 119.99758 * 180.02562 * 16 15 14 19 19 N 1.31611 * 119.99731 * 179.97438 * 18 16 15 20 20 Si 1.86794 * 120.00027 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.47102 * 90.00150 * 20 18 16 22 22 H 1.48494 * 109.47307 * 210.00383 * 20 18 16 23 23 H 1.48507 * 109.47231 * 330.00673 * 20 18 16 24 24 C 1.53775 * 113.61762 * 156.52610 * 11 10 8 25 25 C 1.54079 * 106.62314 * 23.71444 * 6 5 4 26 26 C 1.52996 * 110.00921 * 240.61523 * 25 6 5 27 27 C 1.53004 * 110.15623 * 119.12130 * 25 6 5 28 28 H 1.09003 * 109.47148 * 300.70594 * 1 2 3 29 29 H 1.09001 * 109.46792 * 60.70214 * 1 2 3 30 30 H 1.09005 * 109.47484 * 180.70359 * 1 2 3 31 31 H 1.09008 * 110.75770 * 274.93654 * 4 2 1 32 32 H 1.09004 * 110.75853 * 38.11656 * 4 2 1 33 33 H 1.08997 * 110.48598 * 80.73403 * 5 4 2 34 34 H 1.08995 * 110.48887 * 203.37692 * 5 4 2 35 35 H 1.08995 * 109.47390 * 61.45096 * 7 6 5 36 36 H 1.08997 * 109.47247 * 181.45258 * 7 6 5 37 37 H 1.09004 * 109.46561 * 301.44971 * 7 6 5 38 38 H 0.97006 * 119.99485 * 0.02562 * 10 8 6 39 39 H 1.09007 * 112.84280 * 25.33008 * 11 10 8 40 40 H 1.08996 * 113.62134 * 25.43030 * 12 11 10 41 41 H 1.09007 * 113.61081 * 156.33346 * 12 11 10 42 42 H 1.09004 * 113.60877 * 89.11521 * 13 12 11 43 43 H 1.09000 * 109.46269 * 32.53897 * 14 13 12 44 44 H 1.08999 * 109.46810 * 152.53223 * 14 13 12 45 45 H 0.96993 * 120.00025 * 359.97438 * 15 14 13 46 46 H 0.97002 * 120.00073 * 179.97438 * 19 18 16 47 47 H 1.08999 * 113.61521 * 203.66359 * 24 11 10 48 48 H 1.09000 * 113.61410 * 334.57238 * 24 11 10 49 49 H 1.09004 * 109.46905 * 176.79197 * 26 25 6 50 50 H 1.08997 * 109.47435 * 296.78859 * 26 25 6 51 51 H 1.09003 * 109.46794 * 56.79321 * 26 25 6 52 52 H 1.08996 * 109.47549 * 301.43156 * 27 25 6 53 53 H 1.09001 * 109.47228 * 61.43523 * 27 25 6 54 54 H 1.08999 * 109.47274 * 181.43456 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0721 -0.7804 1.2232 5 6 3.4907 -1.1971 0.7616 6 6 3.3165 -1.5415 -0.7320 7 6 4.5465 -1.0886 -1.5212 8 6 3.1128 -3.0253 -0.8991 9 8 2.9775 -3.7326 0.0767 10 7 3.0809 -3.5663 -2.1332 11 6 2.8824 -5.0087 -2.2958 12 6 4.1596 -5.7648 -2.6979 13 6 3.7632 -5.4915 -4.1612 14 6 4.0198 -6.6730 -5.0988 15 7 5.3926 -6.6050 -5.6057 16 6 5.8519 -7.5638 -6.4688 17 1 5.2024 -8.3703 -6.7754 18 6 7.1529 -7.4997 -6.9487 19 7 7.5946 -8.4215 -7.7778 20 14 8.2767 -6.1052 -6.4178 21 1 9.0130 -6.5026 -5.1909 22 1 9.2461 -5.8101 -7.5032 23 1 7.4642 -4.8942 -6.1370 24 6 2.3094 -5.4008 -3.6679 25 6 2.0699 -0.7775 -1.2181 26 6 1.0139 -1.7642 -1.7202 27 6 2.4507 0.1967 -2.3347 28 1 -0.3633 0.5248 0.8836 29 1 -0.3633 0.5029 -0.8962 30 1 -0.3634 -1.0276 0.0126 31 1 2.1251 -0.1355 2.1004 32 1 1.4561 -1.6565 1.4265 33 1 4.1897 -0.3697 0.8833 34 1 3.8315 -2.0705 1.3174 35 1 5.4276 -1.6151 -1.1545 36 1 4.4030 -1.3128 -2.5781 37 1 4.6853 -0.0150 -1.3931 38 1 3.1895 -3.0006 -2.9137 39 1 2.3534 -5.4603 -1.4565 40 1 5.0781 -5.2641 -2.3920 41 1 4.1435 -6.8217 -2.4314 42 1 4.1517 -4.5503 -4.5502 43 1 3.8795 -7.6064 -4.5537 44 1 3.3213 -6.6319 -5.9346 45 1 5.9758 -5.8805 -5.3306 46 1 8.5036 -8.3765 -8.1135 47 1 1.7885 -6.3583 -3.6661 48 1 1.7354 -4.6063 -4.1446 49 1 0.1151 -1.2190 -2.0084 50 1 1.4030 -2.3050 -2.5828 51 1 0.7712 -2.4714 -0.9271 52 1 3.2023 0.8952 -1.9670 53 1 2.8547 -0.3598 -3.1804 54 1 1.5663 0.7490 -2.6524 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755218785.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:58 Heat of formation + Delta-G solvation = -37.816450 kcal Electronic energy + Delta-G solvation = -29205.636069 eV Core-core repulsion = 25562.860731 eV Total energy + Delta-G solvation = -3642.775338 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.32359 -40.44020 -38.73653 -36.50617 -34.82008 -33.83000 -33.30484 -32.71546 -29.09976 -29.08398 -28.19052 -26.64670 -25.40676 -24.79541 -24.54234 -23.26014 -22.64508 -20.76489 -20.46750 -19.48428 -19.22066 -17.64327 -17.08666 -16.69632 -16.51108 -16.39711 -15.96590 -15.88781 -15.20944 -15.09819 -14.85079 -14.63371 -14.43417 -14.33515 -14.19942 -13.89479 -13.85917 -13.52363 -13.37666 -13.29813 -13.24671 -13.00121 -12.73975 -12.56504 -12.48978 -12.17006 -12.16364 -12.02137 -11.88422 -11.71996 -11.71136 -11.58805 -11.42993 -11.34743 -11.30494 -11.16687 -11.09759 -10.90893 -10.56965 -9.93135 -9.28527 -8.03696 -5.36644 1.35635 1.40424 1.47567 1.65752 2.17182 2.47575 3.27436 3.40279 3.45129 3.50549 3.57144 3.63570 3.86175 3.91927 4.03819 4.10605 4.17933 4.24877 4.34823 4.36633 4.43995 4.51351 4.53099 4.66688 4.70696 4.76586 4.78753 4.83929 4.86277 4.89595 4.89767 4.90423 4.94630 4.97364 5.03351 5.08141 5.11948 5.16616 5.17976 5.22886 5.25517 5.26984 5.28928 5.34235 5.38496 5.47051 5.55539 5.62635 5.68688 5.75849 6.20764 6.57612 7.07770 7.28475 7.84947 8.04055 9.18101 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.020589 B = 0.002822 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.605778 B = 9919.648854 C =10310.179696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.082 4.082 3 H 0.091 0.909 4 C -0.118 4.118 5 C -0.109 4.109 6 C -0.075 4.075 7 C -0.143 4.143 8 C 0.533 3.467 9 O -0.582 6.582 10 N -0.699 5.699 11 C 0.126 3.874 12 C -0.146 4.146 13 C -0.112 4.112 14 C 0.163 3.837 15 N -0.757 5.757 16 C -0.236 4.236 17 H 0.054 0.946 18 C -0.067 4.067 19 N -0.985 5.985 20 Si 0.958 3.042 21 H -0.282 1.282 22 H -0.294 1.294 23 H -0.248 1.248 24 C -0.117 4.117 25 C -0.045 4.045 26 C -0.152 4.152 27 C -0.142 4.142 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.047 0.953 31 H 0.077 0.923 32 H 0.047 0.953 33 H 0.089 0.911 34 H 0.053 0.947 35 H 0.046 0.954 36 H 0.071 0.929 37 H 0.092 0.908 38 H 0.411 0.589 39 H 0.088 0.912 40 H 0.056 0.944 41 H 0.083 0.917 42 H 0.094 0.906 43 H 0.022 0.978 44 H 0.026 0.974 45 H 0.366 0.634 46 H 0.258 0.742 47 H 0.102 0.898 48 H 0.093 0.907 49 H 0.074 0.926 50 H 0.064 0.936 51 H 0.034 0.966 52 H 0.071 0.929 53 H 0.063 0.937 54 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.319 24.764 16.884 33.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.100 4.100 3 H 0.109 0.891 4 C -0.155 4.155 5 C -0.147 4.147 6 C -0.078 4.078 7 C -0.200 4.200 8 C 0.321 3.679 9 O -0.462 6.462 10 N -0.351 5.351 11 C 0.020 3.980 12 C -0.185 4.185 13 C -0.131 4.131 14 C 0.037 3.963 15 N -0.403 5.403 16 C -0.367 4.367 17 H 0.072 0.928 18 C -0.259 4.259 19 N -0.636 5.636 20 Si 0.785 3.215 21 H -0.208 1.208 22 H -0.221 1.221 23 H -0.172 1.172 24 C -0.155 4.155 25 C -0.046 4.046 26 C -0.209 4.209 27 C -0.199 4.199 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.066 0.934 31 H 0.095 0.905 32 H 0.065 0.935 33 H 0.107 0.893 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.090 0.910 37 H 0.111 0.889 38 H 0.248 0.752 39 H 0.106 0.894 40 H 0.075 0.925 41 H 0.102 0.898 42 H 0.113 0.887 43 H 0.040 0.960 44 H 0.044 0.956 45 H 0.199 0.801 46 H 0.067 0.933 47 H 0.121 0.879 48 H 0.111 0.889 49 H 0.092 0.908 50 H 0.083 0.917 51 H 0.053 0.947 52 H 0.090 0.910 53 H 0.082 0.918 54 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.462 24.068 17.438 33.502 hybrid contribution 1.194 -0.127 -0.287 1.235 sum -14.268 23.941 17.151 32.725 Atomic orbital electron populations 1.21879 0.94663 1.01531 1.02071 1.22049 0.95869 0.99208 0.92901 0.89087 1.22511 0.95399 0.99295 0.98319 1.22351 0.98312 1.01275 0.92713 1.21602 0.98291 0.89521 0.98377 1.22086 0.94784 1.03268 0.99882 1.20859 0.73800 0.90862 0.82368 1.90654 1.51360 1.64105 1.40090 1.45798 1.73164 1.07769 1.08392 1.21709 0.96656 0.81120 0.98550 1.23503 0.98098 1.00873 0.95994 1.22784 0.97918 0.98359 0.94038 1.20805 0.84560 0.96216 0.94735 1.42717 1.12158 1.29910 1.55522 1.19072 0.96281 1.03265 1.18048 0.92755 1.25558 0.98984 1.01346 0.99977 1.69890 1.17658 1.37903 1.38148 0.85361 0.78740 0.80219 0.77177 1.20803 1.22093 1.17244 1.23202 0.95195 1.03526 0.93585 1.21176 0.92158 0.94938 0.96309 1.22275 0.99479 0.98581 1.00585 1.22054 1.02170 0.98549 0.97078 0.92418 0.91643 0.93385 0.90465 0.93463 0.89270 0.92802 0.93479 0.90963 0.88925 0.75165 0.89430 0.92513 0.89835 0.88742 0.95991 0.95612 0.80144 0.93335 0.87939 0.88853 0.90761 0.91670 0.94668 0.90971 0.91789 0.91702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 7.97 71.98 0.57 -1.03 16 2 C -0.08 -0.96 2.90 -9.72 -0.03 -0.99 16 3 H 0.09 0.84 7.85 -2.39 -0.02 0.82 16 4 C -0.12 -1.83 6.33 31.89 0.20 -1.63 16 5 C -0.11 -1.88 5.65 31.67 0.18 -1.70 16 6 C -0.07 -1.21 0.81 -52.13 -0.04 -1.25 16 7 C -0.14 -1.85 7.02 71.98 0.51 -1.34 16 8 C 0.53 12.10 4.65 87.66 0.41 12.51 16 9 O -0.58 -18.30 15.08 -3.01 -0.05 -18.34 16 10 N -0.70 -13.57 3.57 -440.05 -1.57 -15.15 16 11 C 0.13 2.81 4.29 45.52 0.20 3.00 16 12 C -0.15 -3.92 7.45 31.21 0.23 -3.69 16 13 C -0.11 -2.98 3.64 -10.17 -0.04 -3.02 16 14 C 0.16 6.00 6.10 86.38 0.53 6.53 16 15 N -0.76 -35.45 5.41 -343.44 -1.86 -37.31 16 16 C -0.24 -13.66 10.47 84.04 0.88 -12.78 16 17 H 0.05 3.46 8.06 -2.91 -0.02 3.43 16 18 C -0.07 -4.03 5.50 84.87 0.47 -3.56 16 19 N -0.99 -63.97 13.97 21.65 0.30 -63.67 16 20 Si 0.96 45.72 27.74 68.60 1.90 47.62 16 21 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 22 H -0.29 -14.13 7.11 99.48 0.71 -13.43 16 23 H -0.25 -10.48 6.52 99.48 0.65 -9.83 16 24 C -0.12 -2.32 7.38 31.12 0.23 -2.09 16 25 C -0.05 -0.56 0.87 -51.39 -0.04 -0.60 16 26 C -0.15 -2.17 5.99 71.98 0.43 -1.74 16 27 C -0.14 -1.19 7.20 71.98 0.52 -0.67 16 28 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.06 0.59 7.75 -2.39 -0.02 0.58 16 30 H 0.05 0.66 6.53 -2.38 -0.02 0.64 16 31 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 32 H 0.05 0.95 8.06 -2.38 -0.02 0.93 16 33 H 0.09 1.18 7.85 -2.39 -0.02 1.16 16 34 H 0.05 1.25 6.95 -2.39 -0.02 1.23 16 35 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.07 0.80 5.92 -2.39 -0.01 0.78 16 37 H 0.09 0.83 6.61 -2.38 -0.02 0.82 16 38 H 0.41 6.16 6.89 -92.70 -0.64 5.52 16 39 H 0.09 2.22 7.50 -2.38 -0.02 2.20 16 40 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.08 2.38 7.91 -2.38 -0.02 2.36 16 42 H 0.09 2.38 8.14 -2.38 -0.02 2.36 16 43 H 0.02 0.85 7.85 -2.39 -0.02 0.83 16 44 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.37 16.22 5.53 -92.71 -0.51 15.71 16 46 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 47 H 0.10 1.97 8.10 -2.39 -0.02 1.95 16 48 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 49 H 0.07 0.88 6.66 -2.38 -0.02 0.86 16 50 H 0.06 0.89 5.76 -2.39 -0.01 0.87 16 51 H 0.03 0.68 6.85 -2.39 -0.02 0.66 16 52 H 0.07 0.49 6.62 -2.39 -0.02 0.48 16 53 H 0.06 0.50 6.87 -2.39 -0.02 0.49 16 54 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 Total: -1.00 -73.75 396.31 3.60 -70.15 By element: Atomic # 1 Polarization: 31.07 SS G_CDS: -0.33 Total: 30.74 kcal Atomic # 6 Polarization: -19.25 SS G_CDS: 5.20 Total: -14.05 kcal Atomic # 7 Polarization: -112.99 SS G_CDS: -3.13 Total: -116.12 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: -0.05 Total: -18.34 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 1.90 Total: 47.62 kcal Total: -73.75 3.60 -70.15 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755218785.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.335 kcal (2) G-P(sol) polarization free energy of solvation -73.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds