Wall clock time and date at job start Tue Mar 31 2020 13:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53005 * 109.46714 * 2 1 4 4 N 1.46496 * 109.46810 * 119.99550 * 2 1 3 5 5 C 1.46495 * 120.00369 * 301.05887 * 4 2 1 6 6 C 1.52999 * 109.46947 * 90.00153 * 5 4 2 7 7 N 1.46510 * 109.46962 * 180.02562 * 6 5 4 8 8 C 1.46497 * 119.99903 * 90.00297 * 7 6 5 9 9 C 1.36937 * 120.00124 * 269.99931 * 7 6 5 10 10 H 1.08005 * 119.99717 * 23.41753 * 9 7 6 11 11 C 1.38801 * 120.00450 * 203.42324 * 9 7 6 12 12 N 1.31628 * 119.99956 * 16.19365 * 11 9 7 13 13 Si 1.86804 * 120.00496 * 196.19505 * 11 9 7 14 14 H 1.48504 * 109.46932 * 89.99658 * 13 11 9 15 15 H 1.48495 * 109.47395 * 209.99930 * 13 11 9 16 16 H 1.48499 * 109.46962 * 330.00226 * 13 11 9 17 17 C 1.34775 * 119.99718 * 121.06445 * 4 2 1 18 18 O 1.21285 * 120.00081 * 184.20413 * 17 4 2 19 19 C 1.50697 * 119.99946 * 4.20235 * 17 4 2 20 20 H 1.09001 * 109.48088 * 50.91343 * 19 17 4 21 21 C 1.52946 * 109.47741 * 290.89437 * 19 17 4 22 22 C 1.52949 * 109.82009 * 177.01712 * 21 19 17 23 23 C 1.53176 * 109.44890 * 62.99282 * 22 21 19 24 24 C 1.53150 * 108.87964 * 303.42562 * 23 22 21 25 25 C 1.52807 * 117.75015 * 199.63692 * 24 23 22 26 26 C 1.52843 * 117.67400 * 268.51744 * 24 23 22 27 27 C 1.53147 * 115.00588 * 53.94511 * 24 23 22 28 28 H 1.08995 * 109.46671 * 300.00253 * 1 2 3 29 29 H 1.08999 * 109.46934 * 60.00180 * 1 2 3 30 30 H 1.08996 * 109.46931 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.46671 * 239.99746 * 2 1 3 32 32 H 1.09003 * 109.46275 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.46785 * 299.99412 * 3 2 1 34 34 H 1.08987 * 109.47427 * 60.00324 * 3 2 1 35 35 H 1.09004 * 109.47371 * 330.00328 * 5 4 2 36 36 H 1.09000 * 109.47264 * 210.00194 * 5 4 2 37 37 H 1.08999 * 109.47675 * 299.99945 * 6 5 4 38 38 H 1.08999 * 109.47321 * 60.00523 * 6 5 4 39 39 H 1.09000 * 109.47237 * 94.15234 * 8 7 6 40 40 H 1.09004 * 109.47043 * 214.15107 * 8 7 6 41 41 H 1.09001 * 109.46862 * 334.14620 * 8 7 6 42 42 H 0.96995 * 120.00023 * 180.02562 * 12 11 9 43 43 H 1.08995 * 109.41578 * 297.12466 * 21 19 17 44 44 H 1.09002 * 109.40960 * 56.91061 * 21 19 17 45 45 H 1.08995 * 109.47460 * 302.99383 * 22 21 19 46 46 H 1.09005 * 109.47732 * 182.98614 * 22 21 19 47 47 H 1.09000 * 109.56855 * 183.60603 * 23 22 21 48 48 H 1.08995 * 109.66989 * 63.30502 * 23 22 21 49 49 H 1.09001 * 117.49823 * 215.10714 * 25 24 23 50 50 H 1.09000 * 117.50525 * 0.14379 * 25 24 23 51 51 H 1.09004 * 117.50716 * 359.72485 * 26 24 23 52 52 H 1.09008 * 117.50367 * 144.74474 * 26 24 23 53 53 H 1.09005 * 109.57169 * 186.23603 * 27 24 23 54 54 H 1.09006 * 109.67217 * 65.93618 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 1.6454 -0.2036 2.5266 6 6 0.3505 -0.8846 2.9744 7 7 -0.0228 -0.3973 4.3046 8 6 -0.8843 0.7801 4.4382 9 6 0.4335 -1.0423 5.4231 10 1 1.3313 -1.6405 5.3729 11 6 -0.2578 -0.9273 6.6212 12 7 -1.4957 -0.4800 6.6265 13 14 0.5686 -1.4074 8.2263 14 1 1.2613 -0.2254 8.7993 15 1 -0.4563 -1.8934 9.1847 16 1 1.5578 -2.4851 7.9707 17 6 2.8108 -1.7737 1.0727 18 8 3.1527 -2.3906 2.0594 19 6 3.2719 -2.2183 -0.2913 20 1 3.7028 -1.3704 -0.8236 21 6 2.0802 -2.7634 -1.0799 22 6 2.5250 -3.1483 -2.4918 23 6 3.5578 -4.2766 -2.4114 24 6 4.7249 -3.8184 -1.5320 25 6 6.0535 -4.5607 -1.6694 26 6 5.9090 -3.1404 -2.2206 27 6 4.3288 -3.3168 -0.1402 28 1 -0.3632 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8901 34 1 1.6768 1.9564 0.8899 35 1 1.4945 0.8753 2.4896 36 1 2.4412 -0.4351 3.2345 37 1 -0.4454 -0.6532 2.2665 38 1 0.5014 -1.9635 3.0115 39 1 -1.9223 0.4617 4.5346 40 1 -0.5935 1.3444 5.3244 41 1 -0.7779 1.4102 3.5552 42 1 -1.9787 -0.3994 7.4638 43 1 1.6820 -3.6424 -0.5733 44 1 1.3054 -1.9990 -1.1399 45 1 2.9702 -2.2822 -2.9813 46 1 1.6617 -3.4859 -3.0654 47 1 3.9235 -4.5088 -3.4116 48 1 3.0986 -5.1639 -1.9755 49 1 6.6520 -4.6923 -0.7679 50 1 6.1016 -5.3776 -2.3894 51 1 5.8620 -3.0229 -3.3033 52 1 6.4122 -2.3373 -1.6820 53 1 5.2057 -2.9126 0.3655 54 1 3.9182 -4.1407 0.4436 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755810691.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:53 Heat of formation + Delta-G solvation = -19.497652 kcal Electronic energy + Delta-G solvation = -29368.129042 eV Core-core repulsion = 25726.148067 eV Total energy + Delta-G solvation = -3641.980975 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.70753 -39.78574 -38.10461 -37.22702 -35.73383 -33.73388 -32.52684 -32.15117 -29.94455 -28.56978 -28.02831 -27.84386 -25.81212 -24.20725 -23.38148 -22.85061 -22.34937 -22.05894 -19.80806 -19.51664 -18.79385 -18.15257 -17.22981 -16.80354 -16.33273 -16.14818 -16.00001 -15.60455 -15.29216 -15.08980 -14.89421 -14.76453 -14.47493 -14.32421 -14.08657 -13.86095 -13.72817 -13.49271 -13.22915 -13.13255 -12.92563 -12.85275 -12.77856 -12.69103 -12.41991 -12.36078 -12.19406 -12.16359 -12.10342 -12.09018 -11.96867 -11.78365 -11.62438 -11.46901 -11.40043 -10.80716 -10.73168 -10.58890 -10.36992 -9.77410 -8.76590 -7.88729 -5.37538 1.40690 1.41234 1.51585 1.65911 2.01076 2.48090 2.88484 3.22624 3.40811 3.68020 3.72235 3.81231 3.88487 3.93635 4.08060 4.13910 4.17011 4.20735 4.24577 4.31797 4.32208 4.47764 4.51172 4.57091 4.58008 4.66871 4.72218 4.81261 4.83246 4.84105 4.91638 4.95596 5.00928 5.04213 5.07163 5.07962 5.08676 5.13689 5.18363 5.22871 5.28108 5.29803 5.32469 5.41602 5.44886 5.47031 5.53684 5.57009 5.65245 5.68221 6.28816 6.53176 7.11021 7.25865 7.82155 8.23906 9.13514 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.016005 B = 0.003288 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.087376 B = 8513.249326 C = 9543.744817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.116 3.884 3 C -0.161 4.161 4 N -0.599 5.599 5 C 0.115 3.885 6 C 0.147 3.853 7 N -0.616 5.616 8 C 0.176 3.824 9 C -0.267 4.267 10 H 0.052 0.948 11 C -0.045 4.045 12 N -0.932 5.932 13 Si 0.964 3.036 14 H -0.281 1.281 15 H -0.287 1.287 16 H -0.279 1.279 17 C 0.502 3.498 18 O -0.592 6.592 19 C -0.087 4.087 20 H 0.118 0.882 21 C -0.117 4.117 22 C -0.105 4.105 23 C -0.081 4.081 24 C -0.128 4.128 25 C -0.182 4.182 26 C -0.161 4.161 27 C -0.058 4.058 28 H 0.048 0.952 29 H 0.098 0.902 30 H 0.052 0.948 31 H 0.124 0.876 32 H 0.057 0.943 33 H 0.097 0.903 34 H 0.047 0.953 35 H 0.083 0.917 36 H 0.038 0.962 37 H 0.064 0.936 38 H 0.012 0.988 39 H 0.006 0.994 40 H 0.015 0.985 41 H 0.039 0.961 42 H 0.251 0.749 43 H 0.047 0.953 44 H 0.088 0.912 45 H 0.083 0.917 46 H 0.082 0.918 47 H 0.083 0.917 48 H 0.056 0.944 49 H 0.082 0.918 50 H 0.106 0.894 51 H 0.112 0.888 52 H 0.089 0.911 53 H 0.050 0.950 54 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.880 0.040 -27.366 29.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.014 3.986 3 C -0.219 4.219 4 N -0.331 5.331 5 C -0.011 4.011 6 C 0.020 3.980 7 N -0.340 5.340 8 C 0.031 3.969 9 C -0.397 4.397 10 H 0.069 0.931 11 C -0.241 4.241 12 N -0.578 5.578 13 Si 0.792 3.208 14 H -0.207 1.207 15 H -0.213 1.213 16 H -0.204 1.204 17 C 0.291 3.709 18 O -0.472 6.472 19 C -0.108 4.108 20 H 0.135 0.865 21 C -0.155 4.155 22 C -0.143 4.143 23 C -0.119 4.119 24 C -0.128 4.128 25 C -0.218 4.218 26 C -0.198 4.198 27 C -0.096 4.096 28 H 0.067 0.933 29 H 0.117 0.883 30 H 0.071 0.929 31 H 0.142 0.858 32 H 0.076 0.924 33 H 0.115 0.885 34 H 0.066 0.934 35 H 0.101 0.899 36 H 0.057 0.943 37 H 0.082 0.918 38 H 0.031 0.969 39 H 0.024 0.976 40 H 0.034 0.966 41 H 0.058 0.942 42 H 0.060 0.940 43 H 0.066 0.934 44 H 0.106 0.894 45 H 0.102 0.898 46 H 0.101 0.899 47 H 0.101 0.899 48 H 0.075 0.925 49 H 0.101 0.899 50 H 0.124 0.876 51 H 0.131 0.869 52 H 0.108 0.892 53 H 0.069 0.931 54 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 9.920 -0.233 -26.723 28.506 hybrid contribution 0.259 -0.429 2.066 2.126 sum 10.180 -0.662 -24.657 26.684 Atomic orbital electron populations 1.22323 0.94352 1.02377 1.03406 1.21739 0.95166 0.94313 0.87343 1.22175 1.01426 0.94960 1.03352 1.48247 1.48710 1.28890 1.07212 1.21803 0.97459 0.98814 0.83010 1.21215 0.95102 0.95394 0.86265 1.44073 1.58061 1.30693 1.01147 1.20567 0.93033 0.86762 0.96504 1.19346 1.04691 1.26719 0.88986 0.93056 1.25688 0.95699 1.01324 1.01404 1.70214 1.09524 1.52169 1.25876 0.85324 0.77602 0.77995 0.79897 1.20717 1.21293 1.20397 1.21557 0.77559 0.79502 0.92239 1.90706 1.58773 1.55499 1.42266 1.21283 0.98074 1.00231 0.91239 0.86463 1.21741 0.95818 1.01327 0.96592 1.21490 0.99043 0.99182 0.94557 1.21185 0.93986 0.98007 0.98700 1.21421 0.90676 1.05002 0.95685 1.23045 0.99265 0.96299 1.03239 1.23090 1.00434 0.95263 1.01041 1.20833 0.97118 0.96763 0.94919 0.93272 0.88306 0.92912 0.85803 0.92420 0.88473 0.93435 0.89919 0.94328 0.91768 0.96913 0.97563 0.96573 0.94246 0.93985 0.93391 0.89389 0.89823 0.89906 0.89888 0.92481 0.89921 0.87563 0.86941 0.89250 0.93111 0.93494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.18 7.75 71.99 0.56 -2.62 16 2 C 0.12 2.22 2.36 45.00 0.11 2.33 16 3 C -0.16 -2.65 9.19 71.98 0.66 -1.99 16 4 N -0.60 -17.81 2.40 -797.83 -1.91 -19.72 16 5 C 0.11 4.41 5.09 86.38 0.44 4.85 16 6 C 0.15 6.61 5.69 86.38 0.49 7.10 16 7 N -0.62 -33.16 2.92 -726.92 -2.12 -35.28 16 8 C 0.18 8.87 9.00 127.77 1.15 10.02 16 9 C -0.27 -16.15 9.63 84.03 0.81 -15.34 16 10 H 0.05 3.22 7.88 -2.91 -0.02 3.20 16 11 C -0.05 -2.71 5.02 84.86 0.43 -2.29 16 12 N -0.93 -57.25 10.93 21.65 0.24 -57.02 16 13 Si 0.96 48.32 29.58 68.60 2.03 50.35 16 14 H -0.28 -13.65 7.11 99.48 0.71 -12.95 16 15 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 16 H -0.28 -13.86 7.11 99.48 0.71 -13.15 16 17 C 0.50 16.44 6.98 87.66 0.61 17.05 16 18 O -0.59 -26.38 15.53 -3.04 -0.05 -26.43 16 19 C -0.09 -1.91 1.68 -11.50 -0.02 -1.93 16 20 H 0.12 1.97 7.52 -2.39 -0.02 1.95 16 21 C -0.12 -2.05 4.64 30.56 0.14 -1.91 16 22 C -0.11 -1.20 5.93 30.64 0.18 -1.02 16 23 C -0.08 -1.08 5.67 30.70 0.17 -0.91 16 24 C -0.13 -2.13 1.97 -52.20 -0.10 -2.23 16 25 C -0.18 -2.80 9.99 30.54 0.31 -2.50 16 26 C -0.16 -2.14 9.93 30.55 0.30 -1.84 16 27 C -0.06 -1.39 4.36 30.70 0.13 -1.26 16 28 H 0.05 1.17 6.21 -2.39 -0.01 1.16 16 29 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.05 1.10 7.77 -2.39 -0.02 1.08 16 31 H 0.12 1.72 4.15 -2.39 -0.01 1.71 16 32 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.05 0.96 6.70 -2.39 -0.02 0.94 16 35 H 0.08 2.90 6.48 -2.38 -0.02 2.88 16 36 H 0.04 1.79 7.48 -2.39 -0.02 1.78 16 37 H 0.06 2.55 5.38 -2.39 -0.01 2.54 16 38 H 0.01 0.64 8.04 -2.39 -0.02 0.62 16 39 H 0.01 0.34 7.38 -2.39 -0.02 0.32 16 40 H 0.02 0.85 7.39 -2.38 -0.02 0.83 16 41 H 0.04 1.62 8.04 -2.39 -0.02 1.60 16 42 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 43 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.09 1.34 4.80 -2.39 -0.01 1.33 16 45 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 46 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 47 H 0.08 0.81 8.09 -2.39 -0.02 0.79 16 48 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 49 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 50 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 51 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 52 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 53 H 0.05 1.34 8.09 -2.38 -0.02 1.32 16 54 H 0.05 1.39 7.89 -2.38 -0.02 1.37 16 Total: -1.00 -76.50 404.75 5.40 -71.09 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: 0.85 Total: 11.50 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: 6.37 Total: 5.51 kcal Atomic # 7 Polarization: -108.22 SS G_CDS: -3.80 Total: -112.02 kcal Atomic # 8 Polarization: -26.38 SS G_CDS: -0.05 Total: -26.43 kcal Atomic # 14 Polarization: 48.32 SS G_CDS: 2.03 Total: 50.35 kcal Total: -76.50 5.40 -71.09 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755810691.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.595 kcal (2) G-P(sol) polarization free energy of solvation -76.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds