Wall clock time and date at job start Tue Mar 31 2020 13:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47207 * 2 1 4 4 N 1.46511 * 109.46867 * 119.99729 * 2 1 3 5 5 C 1.46494 * 119.99943 * 294.50517 * 4 2 1 6 6 C 1.52998 * 109.47386 * 270.00271 * 5 4 2 7 7 N 1.46503 * 109.47256 * 180.02562 * 6 5 4 8 8 C 1.46499 * 119.99559 * 269.99661 * 7 6 5 9 9 C 1.36936 * 120.00287 * 89.99847 * 7 6 5 10 10 H 1.07995 * 119.99821 * 19.39317 * 9 7 6 11 11 C 1.38810 * 119.99921 * 199.38883 * 9 7 6 12 12 N 1.31619 * 119.99977 * 15.68635 * 11 9 7 13 13 Si 1.86794 * 119.99907 * 195.68214 * 11 9 7 14 14 H 1.48500 * 109.47247 * 90.00401 * 13 11 9 15 15 H 1.48503 * 109.47291 * 210.00038 * 13 11 9 16 16 H 1.48494 * 109.47199 * 330.00151 * 13 11 9 17 17 C 1.34780 * 119.99489 * 114.50991 * 4 2 1 18 18 O 1.21287 * 119.99070 * 174.92748 * 17 4 2 19 19 C 1.50693 * 120.00281 * 355.19855 * 17 4 2 20 20 H 1.09004 * 115.55032 * 303.99005 * 19 17 4 21 21 C 1.53004 * 117.50017 * 89.66339 * 19 17 4 22 22 C 1.52999 * 117.49558 * 158.28448 * 19 17 4 23 23 H 1.08997 * 117.50449 * 359.97438 * 22 19 17 24 24 C 1.53004 * 117.50034 * 145.02157 * 22 19 17 25 25 C 1.54263 * 110.03026 * 297.16553 * 24 22 19 26 26 C 1.54893 * 104.19674 * 217.10214 * 25 24 22 27 27 C 1.54894 * 102.74416 * 37.94101 * 26 25 24 28 28 C 1.53867 * 110.03559 * 179.97438 * 24 22 19 29 29 H 1.09005 * 109.47234 * 300.00022 * 1 2 3 30 30 H 1.08993 * 109.46951 * 60.00619 * 1 2 3 31 31 H 1.09004 * 109.46989 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47403 * 239.99328 * 2 1 3 33 33 H 1.09000 * 109.46951 * 177.43389 * 3 2 1 34 34 H 1.08995 * 109.46895 * 297.42936 * 3 2 1 35 35 H 1.08995 * 109.47562 * 57.43344 * 3 2 1 36 36 H 1.09003 * 109.47434 * 30.00480 * 5 4 2 37 37 H 1.08998 * 109.46979 * 150.00375 * 5 4 2 38 38 H 1.09003 * 109.47004 * 300.00472 * 6 5 4 39 39 H 1.08998 * 109.46977 * 60.00103 * 6 5 4 40 40 H 1.09007 * 109.47005 * 91.77924 * 8 7 6 41 41 H 1.08998 * 109.47443 * 211.77871 * 8 7 6 42 42 H 1.09005 * 109.47709 * 331.78192 * 8 7 6 43 43 H 0.96999 * 119.99828 * 180.02562 * 12 11 9 44 44 H 1.08997 * 117.49790 * 214.98088 * 21 19 17 45 45 H 1.08997 * 117.49654 * 359.97284 * 21 19 17 46 46 H 1.09002 * 110.01596 * 58.60576 * 24 22 19 47 47 H 1.08998 * 110.48566 * 335.78063 * 25 24 22 48 48 H 1.09005 * 110.48927 * 98.42600 * 25 24 22 49 49 H 1.08999 * 110.75316 * 279.63117 * 26 25 24 50 50 H 1.09000 * 110.91715 * 156.32760 * 26 25 24 51 51 H 1.09002 * 110.48658 * 203.37766 * 27 26 25 52 52 H 1.09000 * 110.48312 * 80.74079 * 27 26 25 53 53 H 1.09002 * 110.03788 * 238.56858 * 28 24 22 54 54 H 1.09007 * 110.03347 * 359.95781 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 1.7663 -0.1238 2.5234 6 6 2.9160 0.8105 2.9057 7 7 2.6642 1.3769 4.2332 8 6 1.9238 2.6341 4.3647 9 6 3.1210 0.7311 5.3510 10 1 3.9125 0.0011 5.2674 11 6 2.5667 1.0149 6.5916 12 7 1.4190 1.6544 6.6689 13 14 3.4498 0.4890 8.1514 14 1 4.3664 1.5717 8.5903 15 1 2.4525 0.2219 9.2188 16 1 4.2323 -0.7446 7.8853 17 6 2.6994 -1.8474 1.0757 18 8 3.1829 -2.3714 2.0569 19 6 2.8654 -2.4864 -0.2789 20 1 1.9407 -2.6939 -0.8173 21 6 4.0887 -2.0835 -1.1050 22 6 4.0242 -3.4690 -0.4592 23 1 4.6667 -3.6531 0.4019 24 6 3.7965 -4.6684 -1.3815 25 6 2.6729 -5.5626 -0.8178 26 6 3.1376 -7.0047 -1.1397 27 6 4.6671 -6.9310 -0.9061 28 6 5.0645 -5.5381 -1.4381 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 3.1290 1.4427 0.0460 34 1 1.7148 1.9427 -0.9121 35 1 1.6396 1.9694 0.8660 36 1 0.8320 0.4375 2.5074 37 1 1.6939 -0.9289 3.2546 38 1 3.8503 0.2492 2.9217 39 1 2.9883 1.6156 2.1746 40 1 0.8620 2.4195 4.4858 41 1 2.2859 3.1797 5.2360 42 1 2.0725 3.2387 3.4699 43 1 1.0318 1.8530 7.5358 44 1 3.9688 -2.0263 -2.1868 45 1 4.7731 -1.3560 -0.6688 46 1 3.5346 -4.3250 -2.3823 47 1 2.5789 -5.4236 0.2592 48 1 1.7274 -5.3465 -1.3153 49 1 2.9170 -7.2592 -2.1763 50 1 2.6773 -7.7226 -0.4608 51 1 5.1770 -7.7136 -1.4681 52 1 4.8950 -7.0131 0.1566 53 1 5.4172 -5.6176 -2.4664 54 1 5.8425 -5.1054 -0.8091 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755814855.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:57 Heat of formation + Delta-G solvation = -22.637845 kcal Electronic energy + Delta-G solvation = -28738.514302 eV Core-core repulsion = 25096.397158 eV Total energy + Delta-G solvation = -3642.117144 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.43283 -39.57318 -38.12502 -37.16622 -36.59869 -33.72083 -32.51570 -30.39961 -29.54312 -29.35207 -28.09179 -27.91943 -26.07657 -24.27823 -22.95218 -22.57791 -22.24977 -21.39558 -20.48990 -19.56635 -18.85709 -18.30809 -17.18751 -16.93546 -16.59409 -16.34934 -15.89037 -15.65579 -15.34158 -15.09383 -14.88896 -14.76370 -14.41996 -14.18535 -13.98941 -13.85236 -13.71026 -13.36591 -13.24472 -13.11418 -12.89208 -12.82059 -12.68830 -12.49538 -12.39758 -12.21763 -12.15352 -12.10590 -12.02178 -11.93337 -11.86787 -11.80351 -11.50432 -11.46811 -11.35737 -11.11339 -10.79998 -10.69577 -10.66153 -9.78009 -8.83321 -7.90486 -5.33407 1.40741 1.41469 1.51360 1.59176 1.97649 2.47917 2.79088 3.23333 3.41719 3.67887 3.72560 3.73368 3.83017 3.89852 4.01664 4.10117 4.15054 4.19123 4.28636 4.39607 4.54314 4.56268 4.57397 4.62552 4.64182 4.73660 4.76776 4.79886 4.82100 4.84929 4.87080 4.89219 4.94446 4.99866 5.02625 5.05165 5.08504 5.10282 5.13804 5.25808 5.29608 5.34898 5.38654 5.39125 5.41367 5.51493 5.54454 5.59927 5.66494 5.68727 6.26983 6.54423 7.10375 7.26319 7.81755 8.21862 9.13872 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.013071 B = 0.003202 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.639834 B = 8742.900518 C =10170.382299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.127 3.873 3 C -0.162 4.162 4 N -0.596 5.596 5 C 0.117 3.883 6 C 0.148 3.852 7 N -0.616 5.616 8 C 0.178 3.822 9 C -0.265 4.265 10 H 0.055 0.945 11 C -0.048 4.048 12 N -0.933 5.933 13 Si 0.965 3.035 14 H -0.279 1.279 15 H -0.288 1.288 16 H -0.279 1.279 17 C 0.526 3.474 18 O -0.594 6.594 19 C -0.182 4.182 20 H 0.150 0.850 21 C -0.131 4.131 22 C -0.119 4.119 23 H 0.077 0.923 24 C -0.052 4.052 25 C -0.122 4.122 26 C -0.123 4.123 27 C -0.129 4.129 28 C -0.118 4.118 29 H 0.040 0.960 30 H 0.097 0.903 31 H 0.055 0.945 32 H 0.121 0.879 33 H 0.053 0.947 34 H 0.098 0.902 35 H 0.045 0.955 36 H 0.071 0.929 37 H 0.029 0.971 38 H 0.018 0.982 39 H 0.073 0.927 40 H 0.003 0.997 41 H 0.025 0.975 42 H 0.034 0.966 43 H 0.250 0.750 44 H 0.142 0.858 45 H 0.085 0.915 46 H 0.099 0.901 47 H 0.040 0.960 48 H 0.076 0.924 49 H 0.082 0.918 50 H 0.060 0.940 51 H 0.076 0.924 52 H 0.047 0.953 53 H 0.082 0.918 54 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.971 -9.170 -26.661 28.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.025 3.975 3 C -0.220 4.220 4 N -0.328 5.328 5 C -0.009 4.009 6 C 0.021 3.979 7 N -0.340 5.340 8 C 0.034 3.966 9 C -0.395 4.395 10 H 0.072 0.928 11 C -0.244 4.244 12 N -0.580 5.580 13 Si 0.793 3.207 14 H -0.206 1.206 15 H -0.215 1.215 16 H -0.205 1.205 17 C 0.315 3.685 18 O -0.475 6.475 19 C -0.203 4.203 20 H 0.168 0.832 21 C -0.168 4.168 22 C -0.138 4.138 23 H 0.096 0.904 24 C -0.070 4.070 25 C -0.160 4.160 26 C -0.160 4.160 27 C -0.167 4.167 28 C -0.156 4.156 29 H 0.060 0.940 30 H 0.116 0.884 31 H 0.074 0.926 32 H 0.138 0.862 33 H 0.073 0.927 34 H 0.116 0.884 35 H 0.065 0.935 36 H 0.089 0.911 37 H 0.048 0.952 38 H 0.036 0.964 39 H 0.092 0.908 40 H 0.021 0.979 41 H 0.043 0.957 42 H 0.053 0.947 43 H 0.060 0.940 44 H 0.160 0.840 45 H 0.104 0.896 46 H 0.117 0.883 47 H 0.059 0.941 48 H 0.094 0.906 49 H 0.101 0.899 50 H 0.079 0.921 51 H 0.095 0.905 52 H 0.066 0.934 53 H 0.101 0.899 54 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.127 -9.344 -26.007 27.657 hybrid contribution 0.141 -0.205 2.108 2.122 sum 1.268 -9.549 -23.899 25.767 Atomic orbital electron populations 1.22178 0.94346 1.02350 1.03051 1.21497 0.94962 0.94033 0.87032 1.22252 1.01256 0.95189 1.03268 1.48269 1.54636 1.22480 1.07449 1.21829 0.99709 0.96471 0.82849 1.21294 0.95086 0.95124 0.86370 1.44205 1.65195 1.23038 1.01526 1.20587 0.94006 0.85433 0.96616 1.19414 1.13121 1.20228 0.86765 0.92753 1.25631 0.96739 1.01274 1.00711 1.70226 1.17446 1.46601 1.23683 0.85298 0.77788 0.77991 0.79593 1.20569 1.21465 1.20480 1.20626 0.76923 0.80167 0.90746 1.90709 1.49898 1.64767 1.42100 1.22171 0.97435 1.06401 0.94292 0.83214 1.23248 0.96132 0.96924 1.00485 1.22477 0.98824 0.91781 1.00703 0.90439 1.21391 0.95296 0.92400 0.97956 1.22416 0.98466 0.95154 0.99933 1.22497 0.95360 0.96127 1.02036 1.22405 0.96412 0.97454 1.00415 1.22211 0.96835 0.94648 1.01887 0.94046 0.88417 0.92612 0.86156 0.92741 0.88369 0.93544 0.91052 0.95208 0.96372 0.90849 0.97918 0.95658 0.94741 0.94035 0.83980 0.89630 0.88282 0.94124 0.90565 0.89913 0.92101 0.90507 0.93373 0.89919 0.92761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.03 9.26 71.98 0.67 -2.37 16 2 C 0.13 2.63 3.14 44.99 0.14 2.77 16 3 C -0.16 -3.22 7.86 71.98 0.57 -2.65 16 4 N -0.60 -18.94 2.40 -797.84 -1.91 -20.85 16 5 C 0.12 4.89 4.98 86.38 0.43 5.32 16 6 C 0.15 6.67 5.75 86.38 0.50 7.16 16 7 N -0.62 -33.23 2.93 -726.93 -2.13 -35.36 16 8 C 0.18 9.03 9.03 127.77 1.15 10.19 16 9 C -0.27 -16.01 9.68 84.03 0.81 -15.19 16 10 H 0.05 3.38 7.86 -2.91 -0.02 3.36 16 11 C -0.05 -2.88 5.03 84.86 0.43 -2.45 16 12 N -0.93 -57.11 10.67 21.65 0.23 -56.88 16 13 Si 0.97 48.36 29.58 68.60 2.03 50.39 16 14 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 15 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 16 H -0.28 -13.89 7.11 99.48 0.71 -13.19 16 17 C 0.53 18.00 7.37 87.65 0.65 18.65 16 18 O -0.59 -27.59 16.11 -3.05 -0.05 -27.64 16 19 C -0.18 -4.00 3.71 -11.54 -0.04 -4.05 16 20 H 0.15 2.46 8.02 -2.38 -0.02 2.44 16 21 C -0.13 -2.17 9.63 30.60 0.29 -1.87 16 22 C -0.12 -2.54 4.34 -10.79 -0.05 -2.59 16 23 H 0.08 2.26 7.62 -2.39 -0.02 2.24 16 24 C -0.05 -0.81 3.08 -10.07 -0.03 -0.84 16 25 C -0.12 -2.12 6.12 31.67 0.19 -1.93 16 26 C -0.12 -1.81 6.91 31.89 0.22 -1.59 16 27 C -0.13 -2.02 6.83 31.69 0.22 -1.80 16 28 C -0.12 -1.79 6.46 31.33 0.20 -1.58 16 29 H 0.04 0.97 6.89 -2.38 -0.02 0.96 16 30 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 32 H 0.12 1.79 5.97 -2.39 -0.01 1.78 16 33 H 0.05 1.16 7.82 -2.39 -0.02 1.14 16 34 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.05 1.14 6.62 -2.39 -0.02 1.13 16 36 H 0.07 2.89 6.72 -2.39 -0.02 2.87 16 37 H 0.03 1.53 7.50 -2.39 -0.02 1.52 16 38 H 0.02 0.89 8.03 -2.39 -0.02 0.87 16 39 H 0.07 2.82 5.13 -2.39 -0.01 2.80 16 40 H 0.00 0.14 7.61 -2.38 -0.02 0.12 16 41 H 0.02 1.38 6.93 -2.39 -0.02 1.36 16 42 H 0.03 1.44 7.87 -2.38 -0.02 1.43 16 43 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 44 H 0.14 1.26 8.07 -2.39 -0.02 1.24 16 45 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 46 H 0.10 1.06 7.94 -2.39 -0.02 1.04 16 47 H 0.04 0.97 7.85 -2.39 -0.02 0.95 16 48 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 49 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 50 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 51 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 52 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 53 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 54 H 0.05 0.97 7.54 -2.38 -0.02 0.95 16 Total: -1.00 -76.99 413.92 5.35 -71.64 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: 0.84 Total: 13.53 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: 6.35 Total: 5.16 kcal Atomic # 7 Polarization: -109.28 SS G_CDS: -3.81 Total: -113.09 kcal Atomic # 8 Polarization: -27.59 SS G_CDS: -0.05 Total: -27.64 kcal Atomic # 14 Polarization: 48.36 SS G_CDS: 2.03 Total: 50.39 kcal Total: -76.99 5.35 -71.64 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755814855.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.001 kcal (2) G-P(sol) polarization free energy of solvation -76.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds