Wall clock time and date at job start Tue Mar 31 2020 13:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46827 * 2 1 4 4 N 1.46491 * 109.47219 * 119.99896 * 2 1 3 5 5 C 1.46499 * 120.00007 * 300.00292 * 4 2 1 6 6 C 1.53001 * 109.47451 * 269.99562 * 5 4 2 7 7 N 1.46499 * 109.47451 * 180.02562 * 6 5 4 8 8 C 1.46504 * 119.99767 * 90.00477 * 7 6 5 9 9 C 1.36936 * 119.99992 * 270.00357 * 7 6 5 10 10 H 1.07995 * 120.00043 * 28.02533 * 9 7 6 11 11 C 1.38816 * 119.99543 * 208.02964 * 9 7 6 12 12 N 1.31609 * 120.00465 * 18.33959 * 11 9 7 13 13 Si 1.86801 * 119.99683 * 198.33618 * 11 9 7 14 14 H 1.48503 * 109.47004 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47323 * 119.99900 * 13 11 9 16 16 H 1.48505 * 109.47364 * 240.00270 * 13 11 9 17 17 C 1.34776 * 120.00219 * 119.99892 * 4 2 1 18 18 O 1.21276 * 120.00544 * 180.02562 * 17 4 2 19 19 C 1.50700 * 119.99509 * 0.02562 * 17 4 2 20 20 H 1.09001 * 115.55237 * 28.45341 * 19 17 4 21 21 C 1.53007 * 117.49830 * 174.12016 * 19 17 4 22 22 C 1.52999 * 117.50029 * 242.77635 * 19 17 4 23 23 H 1.08996 * 117.50275 * 144.99918 * 22 19 17 24 24 C 1.53009 * 117.49760 * 0.02562 * 22 19 17 25 25 C 1.54264 * 110.03279 * 177.53582 * 24 22 19 26 26 C 1.54887 * 104.19488 * 217.10402 * 25 24 22 27 27 C 1.54885 * 102.74812 * 37.94782 * 26 25 24 28 28 C 1.53876 * 110.02937 * 60.36957 * 24 22 19 29 29 H 1.09000 * 109.47377 * 299.99926 * 1 2 3 30 30 H 1.09003 * 109.46899 * 60.00157 * 1 2 3 31 31 H 1.09002 * 109.46996 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46878 * 240.00213 * 2 1 3 33 33 H 1.09000 * 109.47076 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.47299 * 300.00129 * 3 2 1 35 35 H 1.09000 * 109.47082 * 59.99892 * 3 2 1 36 36 H 1.08996 * 109.47469 * 29.99804 * 5 4 2 37 37 H 1.09011 * 109.47197 * 149.99779 * 5 4 2 38 38 H 1.09003 * 109.47267 * 300.00330 * 6 5 4 39 39 H 1.09002 * 109.46539 * 59.99729 * 6 5 4 40 40 H 1.08996 * 109.46719 * 94.14612 * 8 7 6 41 41 H 1.09001 * 109.46770 * 214.14944 * 8 7 6 42 42 H 1.09001 * 109.47023 * 334.14188 * 8 7 6 43 43 H 0.96996 * 120.00285 * 179.97438 * 12 11 9 44 44 H 1.08997 * 117.49763 * 215.00439 * 21 19 17 45 45 H 1.09005 * 117.49815 * 0.02562 * 21 19 17 46 46 H 1.08996 * 110.01574 * 298.98019 * 24 22 19 47 47 H 1.09001 * 110.48862 * 335.78734 * 25 24 22 48 48 H 1.09000 * 110.48157 * 98.42567 * 25 24 22 49 49 H 1.08994 * 110.75780 * 279.62675 * 26 25 24 50 50 H 1.09003 * 110.75131 * 156.26004 * 26 25 24 51 51 H 1.09008 * 110.48833 * 203.37738 * 27 26 25 52 52 H 1.09002 * 110.48825 * 80.73374 * 27 26 25 53 53 H 1.08998 * 110.03358 * 238.56965 * 28 24 22 54 54 H 1.08994 * 110.03251 * 359.95351 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6905 1.1961 5 6 1.6644 -0.1900 2.5267 6 6 2.7190 0.8170 2.9900 7 7 2.3654 1.3170 4.3208 8 6 2.8542 0.6261 5.5166 9 6 1.5779 2.4302 4.4470 10 1 0.8647 2.6775 3.6747 11 6 1.6966 3.2408 5.5677 12 7 2.7740 3.1698 6.3202 13 14 0.3271 4.4325 6.0076 14 1 -0.7664 4.3204 5.0091 15 1 -0.1990 4.1057 7.3572 16 1 0.8580 5.8194 6.0057 17 6 2.7932 -1.7863 1.0725 18 8 3.1971 -2.3583 2.0627 19 6 3.1577 -2.3009 -0.2963 20 1 3.2007 -1.5496 -1.0848 21 6 4.1498 -3.4632 -0.3730 22 6 2.6686 -3.6992 -0.6787 23 1 2.3898 -3.8680 -1.7188 24 6 1.8464 -4.4680 0.3577 25 6 1.3933 -5.8222 -0.2261 26 6 -0.0316 -6.0249 0.3463 27 6 -0.6206 -4.5928 0.3119 28 6 0.5659 -3.6863 0.6998 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4426 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 0.6905 0.2974 2.4843 37 1 1.6238 -1.0226 3.2291 38 1 3.6930 0.3296 3.0324 39 1 2.7596 1.6495 2.2876 40 1 3.7772 1.0962 5.8560 41 1 2.1036 0.6884 6.3045 42 1 3.0454 -0.4204 5.2790 43 1 2.8571 3.7365 7.1030 44 1 4.8454 -3.4765 -1.2120 45 1 4.5385 -3.8559 0.5666 46 1 2.4380 -4.6283 1.2590 47 1 1.3644 -5.7778 -1.3148 48 1 2.0554 -6.6216 0.1066 49 1 0.0126 -6.4001 1.3686 50 1 -0.6107 -6.6961 -0.2880 51 1 -1.4284 -4.4950 1.0373 52 1 -0.9748 -4.3499 -0.6899 53 1 0.5356 -3.4680 1.7673 54 1 0.5307 -2.7590 0.1282 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755814856.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:02 Heat of formation + Delta-G solvation = -19.606892 kcal Electronic energy + Delta-G solvation = -29593.217649 eV Core-core repulsion = 25951.231937 eV Total energy + Delta-G solvation = -3641.985712 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.62059 -39.42243 -38.07035 -37.13547 -36.54101 -33.73603 -32.47892 -30.35439 -29.55445 -29.52940 -28.10635 -27.91174 -26.20442 -24.17303 -22.90955 -22.61173 -22.22552 -21.49860 -20.69295 -19.31038 -18.70061 -18.31753 -17.19838 -16.90420 -16.64978 -16.25029 -15.98112 -15.57717 -15.36532 -15.10269 -14.95015 -14.80664 -14.43458 -14.27410 -13.97976 -13.90218 -13.74511 -13.29764 -13.18741 -13.05474 -12.86964 -12.78563 -12.66708 -12.64679 -12.50759 -12.19313 -12.17673 -12.08762 -11.92831 -11.91515 -11.84318 -11.73332 -11.51314 -11.46795 -11.35898 -11.04761 -10.84224 -10.73406 -10.59516 -9.72386 -8.72829 -7.85806 -5.40734 1.44573 1.46599 1.57330 1.58299 2.02374 2.50390 2.90271 3.26005 3.46879 3.60099 3.70596 3.75346 3.81075 3.93103 4.01816 4.06102 4.15225 4.19631 4.23498 4.38857 4.52195 4.54163 4.57396 4.63075 4.65588 4.70800 4.72084 4.78775 4.81370 4.82712 4.86421 4.88813 4.93727 4.96194 5.02560 5.05229 5.06366 5.09786 5.12458 5.19930 5.23469 5.32454 5.37449 5.45625 5.47236 5.48528 5.51282 5.56934 5.61567 5.68103 6.31199 6.58119 7.08559 7.31846 7.78749 8.30353 9.16969 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.016727 B = 0.003270 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.545232 B = 8561.710338 C = 8594.576880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.126 3.874 3 C -0.166 4.166 4 N -0.595 5.595 5 C 0.120 3.880 6 C 0.145 3.855 7 N -0.612 5.612 8 C 0.173 3.827 9 C -0.267 4.267 10 H 0.073 0.927 11 C -0.049 4.049 12 N -0.935 5.935 13 Si 0.969 3.031 14 H -0.261 1.261 15 H -0.292 1.292 16 H -0.290 1.290 17 C 0.539 3.461 18 O -0.589 6.589 19 C -0.201 4.201 20 H 0.151 0.849 21 C -0.148 4.148 22 C -0.094 4.094 23 H 0.148 0.852 24 C -0.070 4.070 25 C -0.108 4.108 26 C -0.126 4.126 27 C -0.120 4.120 28 C -0.117 4.117 29 H 0.042 0.958 30 H 0.093 0.907 31 H 0.061 0.939 32 H 0.121 0.879 33 H 0.051 0.949 34 H 0.093 0.907 35 H 0.044 0.956 36 H 0.075 0.925 37 H 0.043 0.957 38 H 0.015 0.985 39 H 0.060 0.940 40 H 0.005 0.995 41 H 0.016 0.984 42 H 0.019 0.981 43 H 0.249 0.751 44 H 0.131 0.869 45 H 0.076 0.924 46 H 0.043 0.957 47 H 0.090 0.910 48 H 0.063 0.937 49 H 0.051 0.949 50 H 0.084 0.916 51 H 0.055 0.945 52 H 0.083 0.917 53 H 0.022 0.978 54 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.157 -15.068 -23.090 28.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.024 3.976 3 C -0.224 4.224 4 N -0.327 5.327 5 C -0.006 4.006 6 C 0.018 3.982 7 N -0.336 5.336 8 C 0.028 3.972 9 C -0.397 4.397 10 H 0.091 0.909 11 C -0.245 4.245 12 N -0.580 5.580 13 Si 0.796 3.204 14 H -0.185 1.185 15 H -0.219 1.219 16 H -0.217 1.217 17 C 0.329 3.671 18 O -0.470 6.470 19 C -0.222 4.222 20 H 0.168 0.832 21 C -0.185 4.185 22 C -0.112 4.112 23 H 0.166 0.834 24 C -0.089 4.089 25 C -0.145 4.145 26 C -0.163 4.163 27 C -0.157 4.157 28 C -0.155 4.155 29 H 0.061 0.939 30 H 0.112 0.888 31 H 0.080 0.920 32 H 0.139 0.861 33 H 0.070 0.930 34 H 0.112 0.888 35 H 0.063 0.937 36 H 0.093 0.907 37 H 0.061 0.939 38 H 0.033 0.967 39 H 0.078 0.922 40 H 0.023 0.977 41 H 0.035 0.965 42 H 0.038 0.962 43 H 0.058 0.942 44 H 0.149 0.851 45 H 0.095 0.905 46 H 0.061 0.939 47 H 0.108 0.892 48 H 0.082 0.918 49 H 0.070 0.930 50 H 0.103 0.897 51 H 0.074 0.926 52 H 0.102 0.898 53 H 0.041 0.959 54 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.914 -15.258 -22.424 27.564 hybrid contribution -0.150 1.061 1.633 1.953 sum -5.064 -14.197 -20.791 25.680 Atomic orbital electron populations 1.22190 0.94072 1.02582 1.03030 1.21502 0.95263 0.93436 0.87361 1.22303 1.01178 0.95922 1.03013 1.48087 1.50100 1.27537 1.06980 1.21726 0.99129 0.96610 0.83128 1.21255 0.94513 0.95580 0.86834 1.44024 1.59507 1.29508 1.00536 1.20494 0.96918 0.91351 0.88461 1.19468 1.12685 1.01235 1.06347 0.90906 1.25935 0.98867 0.99711 0.99977 1.70253 1.27169 1.42320 1.18288 0.85196 0.79327 0.78048 0.77804 1.18461 1.21898 1.21684 1.20217 0.76876 0.79257 0.90750 1.90662 1.55406 1.59433 1.41512 1.22472 1.09735 0.94565 0.95435 0.83169 1.23166 0.93062 0.98583 1.03683 1.22650 0.95453 0.92243 1.00838 0.83429 1.21399 0.95297 0.95624 0.96581 1.22384 0.95964 0.94883 1.01289 1.22515 0.96342 0.96730 1.00737 1.22348 0.96580 0.94871 1.01903 1.22200 0.94905 0.99294 0.99107 0.93869 0.88803 0.91979 0.86134 0.93022 0.88806 0.93736 0.90677 0.93875 0.96654 0.92182 0.97669 0.96521 0.96234 0.94150 0.85089 0.90505 0.93857 0.89156 0.91792 0.92988 0.89743 0.92596 0.89833 0.95903 0.90966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.03 9.17 71.98 0.66 -2.37 16 2 C 0.13 2.64 3.16 45.00 0.14 2.78 16 3 C -0.17 -3.72 8.14 71.98 0.59 -3.13 16 4 N -0.60 -17.71 2.40 -797.84 -1.91 -19.63 16 5 C 0.12 4.62 5.15 86.38 0.44 5.07 16 6 C 0.15 6.58 5.69 86.38 0.49 7.07 16 7 N -0.61 -33.09 2.90 -726.93 -2.10 -35.19 16 8 C 0.17 9.52 9.07 127.77 1.16 10.68 16 9 C -0.27 -15.06 9.56 84.03 0.80 -14.25 16 10 H 0.07 3.90 7.89 -2.91 -0.02 3.87 16 11 C -0.05 -2.81 4.99 84.86 0.42 -2.39 16 12 N -0.93 -57.55 11.35 21.65 0.25 -57.30 16 13 Si 0.97 45.47 29.59 68.60 2.03 47.50 16 14 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 15 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 16 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 17 C 0.54 16.74 5.02 87.66 0.44 17.18 16 18 O -0.59 -24.22 14.96 -3.02 -0.05 -24.27 16 19 C -0.20 -4.13 4.89 -11.54 -0.06 -4.19 16 20 H 0.15 2.15 6.35 -2.39 -0.02 2.13 16 21 C -0.15 -2.81 9.70 30.62 0.30 -2.51 16 22 C -0.09 -1.54 5.00 -10.77 -0.05 -1.60 16 23 H 0.15 1.43 7.80 -2.39 -0.02 1.41 16 24 C -0.07 -1.48 2.44 -10.07 -0.02 -1.51 16 25 C -0.11 -1.64 6.36 31.67 0.20 -1.44 16 26 C -0.13 -1.96 6.91 31.88 0.22 -1.74 16 27 C -0.12 -2.07 6.83 31.67 0.22 -1.85 16 28 C -0.12 -2.66 5.05 31.32 0.16 -2.50 16 29 H 0.04 1.02 6.66 -2.39 -0.02 1.01 16 30 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.06 1.14 6.46 -2.39 -0.02 1.12 16 32 H 0.12 1.77 5.31 -2.39 -0.01 1.75 16 33 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.09 1.50 8.14 -2.39 -0.02 1.49 16 35 H 0.04 1.29 6.17 -2.39 -0.01 1.27 16 36 H 0.07 2.86 6.43 -2.39 -0.02 2.85 16 37 H 0.04 1.92 7.42 -2.38 -0.02 1.90 16 38 H 0.01 0.73 8.07 -2.39 -0.02 0.71 16 39 H 0.06 2.63 5.34 -2.39 -0.01 2.61 16 40 H 0.01 0.30 7.32 -2.39 -0.02 0.29 16 41 H 0.02 0.93 7.72 -2.39 -0.02 0.91 16 42 H 0.02 0.98 8.04 -2.39 -0.02 0.96 16 43 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 44 H 0.13 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.08 1.97 7.60 -2.38 -0.02 1.95 16 46 H 0.04 1.26 7.29 -2.39 -0.02 1.24 16 47 H 0.09 0.97 7.63 -2.39 -0.02 0.95 16 48 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 49 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 50 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 51 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 52 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 53 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 54 H 0.07 1.54 5.25 -2.39 -0.01 1.52 16 Total: -1.00 -73.69 404.14 5.18 -68.51 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: 0.85 Total: 17.07 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: 6.11 Total: 3.30 kcal Atomic # 7 Polarization: -108.35 SS G_CDS: -3.77 Total: -112.12 kcal Atomic # 8 Polarization: -24.22 SS G_CDS: -0.05 Total: -24.27 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -73.69 5.18 -68.51 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755814856.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.904 kcal (2) G-P(sol) polarization free energy of solvation -73.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds