Wall clock time and date at job start Tue Mar 31 2020 13:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.46961 * 2 1 4 4 N 1.46503 * 109.47251 * 120.00061 * 2 1 3 5 5 C 1.46499 * 120.00130 * 125.95633 * 4 2 1 6 6 C 1.53001 * 109.47011 * 270.00034 * 5 4 2 7 7 N 1.46498 * 109.46520 * 179.97438 * 6 5 4 8 8 C 1.46503 * 119.99879 * 90.00338 * 7 6 5 9 9 C 1.36937 * 120.00509 * 269.99741 * 7 6 5 10 10 H 1.07996 * 119.99789 * 22.71250 * 9 7 6 11 11 C 1.38810 * 120.00093 * 202.71864 * 9 7 6 12 12 N 1.31614 * 120.00205 * 10.36466 * 11 9 7 13 13 Si 1.86806 * 119.99899 * 190.36814 * 11 9 7 14 14 H 1.48502 * 109.46821 * 89.99625 * 13 11 9 15 15 H 1.48492 * 109.47222 * 210.00007 * 13 11 9 16 16 H 1.48503 * 109.46667 * 329.99865 * 13 11 9 17 17 C 1.34779 * 119.99800 * 305.95373 * 4 2 1 18 18 O 1.21281 * 119.99858 * 175.36224 * 17 4 2 19 19 C 1.50702 * 119.99835 * 355.36721 * 17 4 2 20 20 H 1.08999 * 115.55058 * 353.03352 * 19 17 4 21 21 C 1.53000 * 117.49508 * 207.32712 * 19 17 4 22 22 C 1.52992 * 59.99888 * 252.51210 * 21 19 17 23 23 H 1.09004 * 117.51950 * 252.51760 * 22 21 19 24 24 C 1.53001 * 117.50150 * 107.49588 * 22 21 19 25 25 C 1.54268 * 110.03003 * 222.54083 * 24 22 21 26 26 C 1.54894 * 104.19430 * 217.10216 * 25 24 22 27 27 C 1.54889 * 102.74961 * 37.94242 * 26 25 24 28 28 C 1.53870 * 110.03544 * 105.37227 * 24 22 21 29 29 H 1.08997 * 109.47431 * 296.92322 * 1 2 3 30 30 H 1.09003 * 109.47446 * 56.92728 * 1 2 3 31 31 H 1.09005 * 109.47512 * 176.92553 * 1 2 3 32 32 H 1.09003 * 109.47283 * 239.99833 * 2 1 3 33 33 H 1.09004 * 109.46803 * 194.82295 * 3 2 1 34 34 H 1.08999 * 109.47366 * 314.81852 * 3 2 1 35 35 H 1.08998 * 109.47181 * 74.82148 * 3 2 1 36 36 H 1.08999 * 109.47200 * 149.99742 * 5 4 2 37 37 H 1.09004 * 109.47168 * 30.00209 * 5 4 2 38 38 H 1.08990 * 109.46967 * 299.99591 * 6 5 4 39 39 H 1.08998 * 109.46708 * 60.00161 * 6 5 4 40 40 H 1.09002 * 109.46996 * 93.82418 * 8 7 6 41 41 H 1.09003 * 109.47262 * 213.82477 * 8 7 6 42 42 H 1.09001 * 109.47099 * 333.83116 * 8 7 6 43 43 H 0.97002 * 120.00067 * 180.02562 * 12 11 9 44 44 H 1.09002 * 117.49793 * 0.02562 * 21 19 17 45 45 H 1.09001 * 117.49690 * 145.02023 * 21 19 17 46 46 H 1.09000 * 110.01198 * 343.97560 * 24 22 21 47 47 H 1.08997 * 110.48785 * 335.77734 * 25 24 22 48 48 H 1.08999 * 110.49016 * 98.42590 * 25 24 22 49 49 H 1.09001 * 110.75465 * 279.62663 * 26 25 24 50 50 H 1.08997 * 110.75699 * 156.25922 * 26 25 24 51 51 H 1.09001 * 110.48709 * 203.38578 * 27 26 25 52 52 H 1.09002 * 110.48749 * 80.73592 * 27 26 25 53 53 H 1.08999 * 110.02933 * 238.56703 * 28 24 22 54 54 H 1.09001 * 110.03325 * 359.97438 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.9648 -1.8012 1.0657 6 6 2.1934 -3.1159 0.9339 7 7 3.1400 -4.2263 0.8028 8 6 3.6289 -4.9171 1.9987 9 6 3.5679 -4.6186 -0.4374 10 1 3.5242 -3.9285 -1.2670 11 6 4.0578 -5.9032 -0.6284 12 7 3.9248 -6.8060 0.3201 13 14 4.9059 -6.3507 -2.2315 14 1 6.3614 -6.0805 -2.1137 15 1 4.6916 -7.7916 -2.5195 16 1 4.3389 -5.5355 -3.3357 17 6 1.5968 -0.3042 2.4167 18 8 1.9343 -0.9282 3.4004 19 6 0.7060 0.9030 2.5589 20 1 0.5437 1.4775 1.6470 21 6 0.7670 1.6742 3.8789 22 6 -0.4539 0.8119 3.5524 23 1 -1.3794 1.3264 3.2941 24 6 -0.6208 -0.4979 4.3254 25 6 -1.0621 -1.6241 3.3678 26 6 -2.0529 -2.4692 4.2064 27 6 -2.8160 -1.3943 5.0195 28 6 -1.7359 -0.3518 5.3755 29 1 -0.3634 0.4653 0.9162 30 1 -0.3634 0.5608 -0.8612 31 1 -0.3634 -1.0262 -0.0551 32 1 1.8933 -0.5139 -0.8900 33 1 3.0977 1.4539 -0.2629 34 1 1.4781 2.0265 -0.7289 35 1 1.9073 1.8748 0.9918 36 1 3.6023 -1.8409 1.9489 37 1 3.5812 -1.6510 0.1793 38 1 1.5772 -3.2660 1.8203 39 1 1.5560 -3.0761 0.0506 40 1 3.0055 -5.7896 2.1945 41 1 4.6592 -5.2351 1.8390 42 1 3.5854 -4.2407 2.8523 43 1 4.2675 -7.7037 0.1867 44 1 1.4516 1.3086 4.6442 45 1 0.6448 2.7565 3.8356 46 1 0.3171 -0.7664 4.8115 47 1 -1.5615 -1.2073 2.4932 48 1 -0.2053 -2.2273 3.0677 49 1 -1.5165 -3.1473 4.8702 50 1 -2.7349 -3.0201 3.5588 51 1 -3.2390 -1.8297 5.9249 52 1 -3.5987 -0.9403 4.4117 53 1 -1.3394 -0.5502 6.3713 54 1 -2.1579 0.6524 5.3348 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755814857.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:06 Heat of formation + Delta-G solvation = -3.480145 kcal Electronic energy + Delta-G solvation = -29741.059472 eV Core-core repulsion = 26099.773068 eV Total energy + Delta-G solvation = -3641.286404 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.77667 -39.35305 -37.88092 -37.32774 -36.62959 -33.97197 -32.50369 -29.89600 -29.54794 -29.35666 -28.05966 -27.96490 -26.34017 -24.46611 -22.92582 -22.51681 -22.20820 -21.45173 -20.81112 -19.50940 -18.77728 -17.83396 -17.30689 -16.92258 -16.72508 -15.98679 -15.89007 -15.51949 -15.49763 -15.11616 -14.85188 -14.65704 -14.47891 -14.22566 -14.11831 -14.06266 -13.85485 -13.31002 -13.15055 -13.03568 -12.92325 -12.81168 -12.53751 -12.50104 -12.42427 -12.19338 -12.13959 -12.10858 -11.92634 -11.91215 -11.87377 -11.64358 -11.53817 -11.43936 -11.43141 -10.91443 -10.71634 -10.68315 -10.54225 -9.72898 -8.78258 -7.84722 -5.36556 1.45402 1.47707 1.56300 1.57294 2.02705 2.50542 2.97556 3.29540 3.47940 3.64372 3.72888 3.77112 3.85092 3.96169 4.02009 4.08229 4.12850 4.18045 4.24664 4.37724 4.52297 4.57428 4.59256 4.61489 4.64203 4.74408 4.75089 4.78976 4.80845 4.86505 4.88598 4.92090 4.94385 4.97152 4.97982 4.98802 5.08366 5.11886 5.13285 5.24245 5.27872 5.32649 5.35927 5.41493 5.43814 5.50498 5.55239 5.61756 5.65523 5.73692 6.28353 6.58636 7.09853 7.35025 7.79520 8.27659 9.19589 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.013977 B = 0.003722 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.777507 B = 7521.603926 C = 8648.623773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.124 3.876 3 C -0.171 4.171 4 N -0.602 5.602 5 C 0.116 3.884 6 C 0.156 3.844 7 N -0.617 5.617 8 C 0.185 3.815 9 C -0.265 4.265 10 H 0.078 0.922 11 C -0.055 4.055 12 N -0.944 5.944 13 Si 0.976 3.024 14 H -0.285 1.285 15 H -0.295 1.295 16 H -0.263 1.263 17 C 0.539 3.461 18 O -0.582 6.582 19 C -0.209 4.209 20 H 0.166 0.834 21 C -0.142 4.142 22 C -0.102 4.102 23 H 0.144 0.856 24 C -0.069 4.069 25 C -0.112 4.112 26 C -0.130 4.130 27 C -0.115 4.115 28 C -0.112 4.112 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.040 0.960 32 H 0.085 0.915 33 H 0.052 0.948 34 H 0.097 0.903 35 H 0.073 0.927 36 H 0.047 0.953 37 H 0.074 0.926 38 H 0.021 0.979 39 H 0.045 0.955 40 H 0.001 0.999 41 H 0.024 0.976 42 H 0.011 0.989 43 H 0.248 0.752 44 H 0.077 0.923 45 H 0.135 0.865 46 H 0.055 0.945 47 H 0.072 0.928 48 H 0.024 0.976 49 H 0.046 0.954 50 H 0.067 0.933 51 H 0.069 0.931 52 H 0.080 0.920 53 H 0.055 0.945 54 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.592 22.740 3.372 26.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.022 3.978 3 C -0.229 4.229 4 N -0.334 5.334 5 C -0.010 4.010 6 C 0.029 3.971 7 N -0.341 5.341 8 C 0.040 3.960 9 C -0.395 4.395 10 H 0.095 0.905 11 C -0.249 4.249 12 N -0.590 5.590 13 Si 0.803 3.197 14 H -0.212 1.212 15 H -0.222 1.222 16 H -0.187 1.187 17 C 0.330 3.670 18 O -0.462 6.462 19 C -0.229 4.229 20 H 0.182 0.818 21 C -0.179 4.179 22 C -0.121 4.121 23 H 0.161 0.839 24 C -0.087 4.087 25 C -0.149 4.149 26 C -0.168 4.168 27 C -0.153 4.153 28 C -0.149 4.149 29 H 0.104 0.896 30 H 0.114 0.886 31 H 0.060 0.940 32 H 0.103 0.897 33 H 0.071 0.929 34 H 0.116 0.884 35 H 0.091 0.909 36 H 0.065 0.935 37 H 0.092 0.908 38 H 0.040 0.960 39 H 0.063 0.937 40 H 0.019 0.981 41 H 0.042 0.958 42 H 0.030 0.970 43 H 0.058 0.942 44 H 0.096 0.904 45 H 0.153 0.847 46 H 0.073 0.927 47 H 0.091 0.909 48 H 0.043 0.957 49 H 0.065 0.935 50 H 0.086 0.914 51 H 0.088 0.912 52 H 0.099 0.901 53 H 0.074 0.926 54 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -13.355 22.239 3.863 26.227 hybrid contribution 1.170 -1.439 -0.646 1.964 sum -12.185 20.800 3.217 24.320 Atomic orbital electron populations 1.22664 0.93470 1.02598 1.05003 1.21376 0.95559 0.94058 0.86833 1.22501 1.01950 0.94452 1.03982 1.48137 1.45211 1.33240 1.06849 1.21867 0.91720 0.86449 1.00918 1.20961 0.90917 0.87177 0.98059 1.44075 1.50433 1.36439 1.03164 1.20448 0.97094 0.92605 0.85882 1.19583 1.36562 0.95320 0.88029 0.90465 1.25912 1.02456 0.95400 1.01179 1.70269 1.50299 1.03345 1.35131 0.85137 0.78270 0.76802 0.79444 1.21210 1.22175 1.18729 1.20156 0.79846 0.84999 0.82026 1.90651 1.59031 1.57558 1.38963 1.23068 1.02786 0.98798 0.98291 0.81753 1.23185 1.00168 0.99450 0.95122 1.22593 0.93300 0.97631 0.98544 0.83870 1.21396 0.98897 0.92873 0.95569 1.22282 0.97628 0.96575 0.98427 1.22509 0.97848 0.97896 0.98543 1.22338 0.97585 0.95550 0.99812 1.22160 0.94914 1.00334 0.97528 0.89560 0.88612 0.94030 0.89688 0.92904 0.88445 0.90857 0.93452 0.90753 0.96016 0.93675 0.98110 0.95759 0.97012 0.94236 0.90391 0.84673 0.92659 0.90907 0.95705 0.93487 0.91393 0.91203 0.90112 0.92639 0.89463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.17 8.83 71.98 0.64 -2.53 16 2 C 0.12 2.70 3.26 44.99 0.15 2.84 16 3 C -0.17 -2.67 8.90 71.98 0.64 -2.03 16 4 N -0.60 -18.28 2.42 -797.82 -1.93 -20.22 16 5 C 0.12 4.52 5.65 86.38 0.49 5.01 16 6 C 0.16 7.11 5.97 86.38 0.52 7.63 16 7 N -0.62 -33.57 2.93 -726.95 -2.13 -35.70 16 8 C 0.18 10.32 8.96 127.77 1.15 11.46 16 9 C -0.27 -15.00 9.67 84.03 0.81 -14.19 16 10 H 0.08 4.12 7.85 -2.91 -0.02 4.10 16 11 C -0.05 -3.16 5.15 84.86 0.44 -2.72 16 12 N -0.94 -58.21 10.56 21.65 0.23 -57.98 16 13 Si 0.98 45.70 29.57 68.60 2.03 47.73 16 14 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 15 H -0.30 -13.93 7.11 99.48 0.71 -13.23 16 16 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 17 C 0.54 16.62 5.56 87.66 0.49 17.11 16 18 O -0.58 -23.27 13.08 -3.03 -0.04 -23.31 16 19 C -0.21 -4.22 2.75 -11.54 -0.03 -4.25 16 20 H 0.17 2.39 3.56 -2.39 -0.01 2.38 16 21 C -0.14 -2.50 9.71 30.59 0.30 -2.21 16 22 C -0.10 -1.82 4.62 -10.80 -0.05 -1.87 16 23 H 0.14 1.63 8.06 -2.39 -0.02 1.61 16 24 C -0.07 -1.64 2.21 -10.07 -0.02 -1.67 16 25 C -0.11 -3.01 5.50 31.67 0.17 -2.84 16 26 C -0.13 -3.14 6.91 31.89 0.22 -2.92 16 27 C -0.12 -2.05 6.83 31.67 0.22 -1.83 16 28 C -0.11 -2.05 6.46 31.32 0.20 -1.85 16 29 H 0.09 1.37 4.24 -2.39 -0.01 1.36 16 30 H 0.10 1.13 8.11 -2.39 -0.02 1.11 16 31 H 0.04 0.92 8.14 -2.38 -0.02 0.91 16 32 H 0.08 1.97 7.85 -2.39 -0.02 1.95 16 33 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 34 H 0.10 0.95 8.03 -2.39 -0.02 0.93 16 35 H 0.07 1.12 5.00 -2.39 -0.01 1.10 16 36 H 0.05 2.09 7.49 -2.39 -0.02 2.07 16 37 H 0.07 2.82 7.97 -2.39 -0.02 2.80 16 38 H 0.02 1.05 8.07 -2.39 -0.02 1.03 16 39 H 0.04 2.00 8.04 -2.39 -0.02 1.99 16 40 H 0.00 0.04 7.44 -2.39 -0.02 0.02 16 41 H 0.02 1.41 7.16 -2.39 -0.02 1.39 16 42 H 0.01 0.59 8.04 -2.39 -0.02 0.57 16 43 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 44 H 0.08 1.82 7.90 -2.39 -0.02 1.80 16 45 H 0.14 1.42 8.14 -2.39 -0.02 1.40 16 46 H 0.05 1.78 6.24 -2.39 -0.01 1.76 16 47 H 0.07 1.73 7.85 -2.39 -0.02 1.71 16 48 H 0.02 0.88 7.17 -2.39 -0.02 0.86 16 49 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 50 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 51 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 52 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 53 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 54 H 0.09 1.18 7.62 -2.39 -0.02 1.16 16 Total: -1.00 -73.05 403.94 5.32 -67.73 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: 0.85 Total: 18.61 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: 6.31 Total: 3.14 kcal Atomic # 7 Polarization: -110.07 SS G_CDS: -3.83 Total: -113.90 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: -0.04 Total: -23.31 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -73.05 5.32 -67.73 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755814857.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.253 kcal (2) G-P(sol) polarization free energy of solvation -73.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds