Wall clock time and date at job start Tue Mar 31 2020 13:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47029 * 2 1 4 4 N 1.46497 * 109.47456 * 120.00195 * 2 1 3 5 5 C 1.46504 * 119.99992 * 305.71713 * 4 2 1 6 6 C 1.52999 * 109.47343 * 89.99328 * 5 4 2 7 7 N 1.46502 * 109.47307 * 180.02562 * 6 5 4 8 8 C 1.46497 * 119.99736 * 270.00088 * 7 6 5 9 9 C 1.36928 * 120.00135 * 90.00299 * 7 6 5 10 10 H 1.08001 * 120.00055 * 339.60050 * 9 7 6 11 11 C 1.38812 * 120.00217 * 159.60077 * 9 7 6 12 12 N 1.31616 * 119.99709 * 346.40884 * 11 9 7 13 13 Si 1.86801 * 120.00197 * 166.13135 * 11 9 7 14 14 H 1.48500 * 109.46802 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47229 * 120.00258 * 13 11 9 16 16 H 1.48507 * 109.46980 * 240.00124 * 13 11 9 17 17 C 1.34775 * 120.00632 * 125.70884 * 4 2 1 18 18 O 1.21277 * 120.00550 * 185.21419 * 17 4 2 19 19 C 1.50704 * 119.99461 * 5.21983 * 17 4 2 20 20 H 1.09002 * 115.55324 * 30.14358 * 19 17 4 21 21 C 1.53007 * 117.49568 * 244.47415 * 19 17 4 22 22 C 1.53005 * 117.49613 * 175.81726 * 19 17 4 23 23 H 1.08997 * 117.49806 * 359.97438 * 22 19 17 24 24 C 1.52997 * 117.49529 * 214.99846 * 22 19 17 25 25 C 1.54268 * 110.03338 * 177.90644 * 24 22 19 26 26 C 1.54957 * 104.16323 * 217.13893 * 25 24 22 27 27 C 1.54891 * 102.77955 * 37.88632 * 26 25 24 28 28 C 1.53877 * 110.03448 * 60.69101 * 24 22 19 29 29 H 1.08996 * 109.47345 * 304.71828 * 1 2 3 30 30 H 1.08998 * 109.46832 * 64.72255 * 1 2 3 31 31 H 1.08998 * 109.46818 * 184.71835 * 1 2 3 32 32 H 1.09006 * 109.47480 * 240.00517 * 2 1 3 33 33 H 1.09005 * 109.47088 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.47297 * 300.00097 * 3 2 1 35 35 H 1.09004 * 109.46992 * 60.00266 * 3 2 1 36 36 H 1.09000 * 109.46791 * 329.99988 * 5 4 2 37 37 H 1.08995 * 109.47630 * 209.99898 * 5 4 2 38 38 H 1.09002 * 109.47145 * 60.00493 * 6 5 4 39 39 H 1.09008 * 109.47435 * 300.00629 * 6 5 4 40 40 H 1.09004 * 109.47411 * 266.25121 * 8 7 6 41 41 H 1.08998 * 109.47383 * 26.25256 * 8 7 6 42 42 H 1.09005 * 109.47001 * 146.24946 * 8 7 6 43 43 H 0.96998 * 119.99691 * 180.02562 * 12 11 9 44 44 H 1.08996 * 117.49921 * 0.02562 * 21 19 17 45 45 H 1.09001 * 117.49517 * 145.02216 * 21 19 17 46 46 H 1.09005 * 110.02145 * 299.30087 * 24 22 19 47 47 H 1.08999 * 110.48300 * 335.78950 * 25 24 22 48 48 H 1.08996 * 110.48480 * 98.42571 * 25 24 22 49 49 H 1.09002 * 110.72305 * 279.57162 * 26 25 24 50 50 H 1.09003 * 110.92699 * 156.29345 * 26 25 24 51 51 H 1.08994 * 110.49030 * 203.40331 * 27 26 25 52 52 H 1.09003 * 110.48122 * 80.76182 * 27 26 25 53 53 H 1.08993 * 110.03577 * 238.56984 * 28 24 22 54 54 H 1.09009 * 110.02968 * 359.97438 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.5643 -0.2673 2.5231 6 6 0.3020 -1.0443 2.9021 7 7 -0.1525 -0.6206 4.2288 8 6 0.3357 -1.3108 5.4253 9 6 -1.0335 0.4205 4.3506 10 1 -1.1430 1.1322 3.5456 11 6 -1.7858 0.5614 5.5086 12 7 -1.8594 -0.4308 6.3703 13 14 -2.6874 2.1618 5.8479 14 1 -2.4397 3.1147 4.7361 15 1 -4.1442 1.8957 5.9573 16 1 -2.1943 2.7476 7.1203 17 6 2.8853 -1.7155 1.0758 18 8 3.2165 -2.3479 2.0562 19 6 3.4433 -2.0755 -0.2770 20 1 3.5446 -1.2480 -0.9792 21 6 3.0790 -3.4471 -0.8492 22 6 4.4965 -3.1839 -0.3346 23 1 4.7861 -3.6523 0.6060 24 6 5.6112 -3.0459 -1.3734 25 6 6.6005 -4.2227 -1.2466 26 6 7.9854 -3.5855 -1.5245 27 6 7.8705 -2.2027 -0.8363 28 6 6.4183 -1.7619 -1.1131 29 1 -0.3634 0.5853 0.8447 30 1 -0.3633 0.4388 -0.9293 31 1 -0.3633 -1.0242 0.0845 32 1 1.8934 -0.5138 -0.8901 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9563 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 1.3432 0.7999 2.5081 37 1 2.3468 -0.4659 3.2554 38 1 0.5230 -2.1116 2.9172 39 1 -0.4806 -0.8457 2.1697 40 1 -0.3651 -2.0986 5.7017 41 1 1.3121 -1.7492 5.2189 42 1 0.4234 -0.5983 6.2455 43 1 -2.3853 -0.3325 7.1793 44 1 2.4355 -4.0887 -0.2473 45 1 2.9411 -3.5218 -1.9278 46 1 5.1855 -3.0223 -2.3767 47 1 6.5682 -4.6415 -0.2408 48 1 6.3772 -4.9902 -1.9877 49 1 8.1494 -3.4713 -2.5960 50 1 8.7831 -4.1761 -1.0739 51 1 8.5741 -1.4971 -1.2779 52 1 8.0435 -2.2947 0.2360 53 1 6.3850 -1.1156 -1.9901 54 1 6.0155 -1.2368 -0.2468 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755814858.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:10 Heat of formation + Delta-G solvation = -21.541742 kcal Electronic energy + Delta-G solvation = -28651.193480 eV Core-core repulsion = 25009.123867 eV Total energy + Delta-G solvation = -3642.069614 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.46139 -39.59209 -38.15142 -37.17424 -36.53426 -33.73968 -32.49162 -30.41360 -29.53610 -29.37835 -28.06639 -27.95278 -26.14621 -24.22114 -22.94346 -22.64154 -22.28038 -21.50757 -20.35875 -19.42831 -18.86382 -18.41701 -17.23942 -16.82930 -16.53989 -16.37462 -16.00811 -15.55708 -15.52827 -14.97932 -14.81514 -14.77388 -14.50056 -14.16939 -14.02075 -13.91651 -13.69885 -13.25299 -13.14499 -13.11062 -12.86463 -12.82437 -12.68810 -12.57988 -12.50086 -12.20751 -12.13716 -12.11097 -11.94477 -11.92594 -11.85638 -11.79894 -11.50590 -11.47380 -11.28270 -11.10645 -10.83850 -10.74463 -10.65664 -9.79835 -8.81020 -7.84547 -5.32973 1.45416 1.47204 1.50758 1.57932 1.96306 2.50949 2.86995 3.29595 3.40111 3.67359 3.71334 3.76797 3.82236 3.88914 4.01951 4.07506 4.15193 4.17616 4.22374 4.36904 4.52937 4.55920 4.61870 4.63716 4.64260 4.70942 4.76693 4.78748 4.81004 4.84283 4.88044 4.90589 4.90721 4.99020 5.03270 5.04113 5.07451 5.10919 5.12407 5.24933 5.26284 5.35757 5.39440 5.41396 5.42933 5.52268 5.54517 5.59320 5.62804 5.64725 6.28090 6.52048 7.09866 7.23117 7.80623 8.28266 9.20653 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.021458 B = 0.002693 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.551973 B =10393.086305 C =10880.747009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.127 3.873 3 C -0.161 4.161 4 N -0.597 5.597 5 C 0.117 3.883 6 C 0.147 3.853 7 N -0.618 5.618 8 C 0.182 3.818 9 C -0.258 4.258 10 H 0.080 0.920 11 C -0.060 4.060 12 N -0.944 5.944 13 Si 0.974 3.026 14 H -0.260 1.260 15 H -0.292 1.292 16 H -0.293 1.293 17 C 0.529 3.471 18 O -0.593 6.593 19 C -0.187 4.187 20 H 0.151 0.849 21 C -0.134 4.134 22 C -0.111 4.111 23 H 0.083 0.917 24 C -0.054 4.054 25 C -0.120 4.120 26 C -0.122 4.122 27 C -0.129 4.129 28 C -0.121 4.121 29 H 0.044 0.956 30 H 0.095 0.905 31 H 0.048 0.952 32 H 0.121 0.879 33 H 0.060 0.940 34 H 0.094 0.906 35 H 0.043 0.957 36 H 0.077 0.923 37 H 0.043 0.957 38 H 0.017 0.983 39 H 0.062 0.938 40 H 0.001 0.999 41 H 0.012 0.988 42 H 0.025 0.975 43 H 0.248 0.752 44 H 0.079 0.921 45 H 0.139 0.861 46 H 0.096 0.904 47 H 0.052 0.948 48 H 0.078 0.922 49 H 0.079 0.921 50 H 0.066 0.934 51 H 0.073 0.927 52 H 0.049 0.951 53 H 0.079 0.921 54 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.001 -1.567 -24.836 29.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.025 3.975 3 C -0.219 4.219 4 N -0.329 5.329 5 C -0.009 4.009 6 C 0.020 3.980 7 N -0.341 5.341 8 C 0.037 3.963 9 C -0.388 4.388 10 H 0.097 0.903 11 C -0.254 4.254 12 N -0.591 5.591 13 Si 0.802 3.198 14 H -0.184 1.184 15 H -0.219 1.219 16 H -0.220 1.220 17 C 0.319 3.681 18 O -0.474 6.474 19 C -0.208 4.208 20 H 0.169 0.831 21 C -0.171 4.171 22 C -0.130 4.130 23 H 0.101 0.899 24 C -0.072 4.072 25 C -0.157 4.157 26 C -0.159 4.159 27 C -0.167 4.167 28 C -0.158 4.158 29 H 0.063 0.937 30 H 0.114 0.886 31 H 0.068 0.932 32 H 0.139 0.861 33 H 0.079 0.921 34 H 0.113 0.887 35 H 0.062 0.938 36 H 0.095 0.905 37 H 0.061 0.939 38 H 0.035 0.965 39 H 0.080 0.920 40 H 0.019 0.981 41 H 0.030 0.970 42 H 0.044 0.956 43 H 0.057 0.943 44 H 0.098 0.902 45 H 0.157 0.843 46 H 0.114 0.886 47 H 0.071 0.929 48 H 0.097 0.903 49 H 0.098 0.902 50 H 0.084 0.916 51 H 0.091 0.909 52 H 0.068 0.932 53 H 0.098 0.902 54 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 16.071 -1.871 -24.179 29.093 hybrid contribution -0.823 0.559 1.568 1.857 sum 15.248 -1.312 -22.611 27.304 Atomic orbital electron populations 1.22247 0.94617 1.01953 1.03203 1.21507 0.94796 0.94059 0.87155 1.22174 1.01480 0.95071 1.03132 1.48176 1.44037 1.33134 1.07524 1.21794 0.96610 0.99325 0.83156 1.21216 0.94917 0.95057 0.86858 1.44125 1.50833 1.38208 1.00981 1.20475 0.92517 0.94854 0.88500 1.19593 1.14613 1.02055 1.02497 0.90269 1.25871 0.99914 1.00912 0.98737 1.70289 1.44447 1.31660 1.12747 0.85094 0.77427 0.79442 0.77824 1.18404 1.21889 1.22021 1.20496 0.77913 0.78986 0.90661 1.90673 1.62047 1.52829 1.41879 1.22313 1.07163 0.96076 0.95225 0.83121 1.23199 0.97493 0.93876 1.02578 1.22501 0.90646 0.99349 1.00493 0.89852 1.21415 0.93298 0.95172 0.97364 1.22447 0.94484 0.97256 1.01523 1.22511 0.96747 0.95576 1.01095 1.22384 0.96711 0.97598 0.99991 1.22220 0.94915 0.97124 1.01553 0.93674 0.88595 0.93243 0.86150 0.92126 0.88688 0.93820 0.90455 0.93884 0.96454 0.91987 0.98077 0.96973 0.95629 0.94286 0.90219 0.84305 0.88554 0.92925 0.90325 0.90225 0.91569 0.90860 0.93248 0.90183 0.93394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.62 7.81 71.98 0.56 -3.06 16 2 C 0.13 2.64 3.06 44.99 0.14 2.78 16 3 C -0.16 -2.92 9.26 71.98 0.67 -2.26 16 4 N -0.60 -18.07 2.40 -797.83 -1.91 -19.98 16 5 C 0.12 4.53 4.99 86.38 0.43 4.96 16 6 C 0.15 6.61 5.70 86.38 0.49 7.11 16 7 N -0.62 -33.42 2.93 -726.93 -2.13 -35.55 16 8 C 0.18 10.14 8.97 127.77 1.15 11.28 16 9 C -0.26 -14.45 9.68 84.03 0.81 -13.63 16 10 H 0.08 4.18 7.87 -2.91 -0.02 4.15 16 11 C -0.06 -3.45 5.09 84.86 0.43 -3.02 16 12 N -0.94 -58.20 10.60 21.65 0.23 -57.97 16 13 Si 0.97 45.62 29.58 68.60 2.03 47.65 16 14 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 15 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 16 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 17 C 0.53 16.91 7.44 87.66 0.65 17.56 16 18 O -0.59 -25.15 15.90 -3.02 -0.05 -25.20 16 19 C -0.19 -3.88 4.03 -11.53 -0.05 -3.93 16 20 H 0.15 2.19 6.79 -2.39 -0.02 2.17 16 21 C -0.13 -2.36 9.89 30.62 0.30 -2.06 16 22 C -0.11 -2.22 4.50 -10.77 -0.05 -2.27 16 23 H 0.08 2.26 7.34 -2.39 -0.02 2.25 16 24 C -0.05 -0.76 3.10 -10.07 -0.03 -0.79 16 25 C -0.12 -1.64 6.37 31.69 0.20 -1.44 16 26 C -0.12 -1.47 6.91 31.91 0.22 -1.25 16 27 C -0.13 -1.84 6.83 31.67 0.22 -1.63 16 28 C -0.12 -1.76 6.25 31.32 0.20 -1.56 16 29 H 0.04 1.26 6.82 -2.39 -0.02 1.24 16 30 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.05 1.23 7.69 -2.39 -0.02 1.21 16 32 H 0.12 1.78 5.64 -2.38 -0.01 1.76 16 33 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 34 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.04 0.99 6.90 -2.38 -0.02 0.98 16 36 H 0.08 2.94 6.73 -2.39 -0.02 2.92 16 37 H 0.04 1.92 7.50 -2.39 -0.02 1.90 16 38 H 0.02 0.83 8.07 -2.39 -0.02 0.81 16 39 H 0.06 2.66 5.27 -2.38 -0.01 2.65 16 40 H 0.00 0.06 7.49 -2.39 -0.02 0.04 16 41 H 0.01 0.61 8.04 -2.39 -0.02 0.59 16 42 H 0.02 1.48 7.08 -2.38 -0.02 1.47 16 43 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 44 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 45 H 0.14 1.44 8.06 -2.39 -0.02 1.42 16 46 H 0.10 0.95 7.93 -2.38 -0.02 0.93 16 47 H 0.05 0.90 7.64 -2.39 -0.02 0.88 16 48 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 49 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 50 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 51 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 52 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 53 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 54 H 0.05 0.91 7.35 -2.38 -0.02 0.89 16 Total: -1.00 -73.63 412.54 5.35 -68.27 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: 0.84 Total: 15.98 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: 6.34 Total: 6.79 kcal Atomic # 7 Polarization: -109.69 SS G_CDS: -3.81 Total: -113.50 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: -0.05 Total: -25.20 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -73.63 5.35 -68.27 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755814858.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.732 kcal (2) G-P(sol) polarization free energy of solvation -73.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds