Wall clock time and date at job start Tue Mar 31 2020 13:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46836 * 111.00352 * 2 1 4 4 C 1.53036 * 109.52573 * 174.16254 * 3 2 1 5 5 C 1.53117 * 109.27972 * 59.17956 * 4 3 2 6 6 C 1.53123 * 109.15902 * 302.34920 * 5 4 3 7 7 C 1.46853 * 110.99778 * 235.78800 * 2 1 3 8 8 H 1.09000 * 109.44840 * 65.82627 * 7 2 1 9 9 C 1.52998 * 109.46208 * 305.85930 * 7 2 1 10 10 C 1.53005 * 109.47059 * 174.55110 * 9 7 2 11 11 C 1.50696 * 109.47151 * 176.74630 * 10 9 7 12 12 O 1.21282 * 120.00082 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00014 * 179.97438 * 11 10 9 14 14 C 1.46927 * 120.63164 * 180.02562 * 13 11 10 15 15 C 1.53194 * 108.77554 * 233.62978 * 14 13 11 16 16 C 1.53046 * 109.31098 * 305.36372 * 15 14 13 17 17 C 1.52995 * 109.45753 * 181.38367 * 16 15 14 18 18 C 1.50707 * 109.47121 * 174.97318 * 17 16 15 19 19 H 1.08001 * 119.99624 * 0.02562 * 18 17 16 20 20 C 1.37877 * 120.00152 * 180.02562 * 18 17 16 21 21 N 1.31515 * 120.00096 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 119.99938 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.47246 * 270.00045 * 22 20 18 24 24 H 1.48502 * 109.46848 * 30.00496 * 22 20 18 25 25 H 1.48499 * 109.46784 * 149.99858 * 22 20 18 26 26 C 1.53039 * 109.52442 * 61.37301 * 16 15 14 27 27 C 1.46930 * 120.62916 * 0.02562 * 13 11 10 28 28 H 1.08997 * 109.47621 * 191.18330 * 1 2 3 29 29 H 1.09008 * 109.47094 * 311.17658 * 1 2 3 30 30 H 1.08997 * 109.47114 * 71.17518 * 1 2 3 31 31 H 1.09001 * 109.46418 * 54.14346 * 3 2 1 32 32 H 1.09004 * 109.46616 * 294.17930 * 3 2 1 33 33 H 1.09004 * 109.50289 * 299.23804 * 4 3 2 34 34 H 1.08999 * 109.53925 * 179.14200 * 4 3 2 35 35 H 1.08997 * 109.52296 * 182.44151 * 5 4 3 36 36 H 1.08998 * 109.57559 * 62.28046 * 5 4 3 37 37 H 1.09005 * 109.50077 * 297.71127 * 6 5 4 38 38 H 1.09000 * 109.53473 * 177.61728 * 6 5 4 39 39 H 1.09002 * 109.47510 * 54.55408 * 9 7 2 40 40 H 1.09002 * 109.47276 * 294.54671 * 9 7 2 41 41 H 1.08996 * 109.46852 * 56.74887 * 10 9 7 42 42 H 1.08999 * 109.46651 * 296.74787 * 10 9 7 43 43 H 1.09001 * 109.58615 * 113.84420 * 14 13 11 44 44 H 1.08994 * 109.58847 * 353.41585 * 14 13 11 45 45 H 1.09000 * 109.49904 * 185.41532 * 15 14 13 46 46 H 1.09001 * 109.49776 * 65.31530 * 15 14 13 47 47 H 1.08999 * 109.46098 * 301.35891 * 16 15 14 48 48 H 1.09001 * 109.47596 * 54.97570 * 17 16 15 49 49 H 1.08997 * 109.47790 * 294.97261 * 17 16 15 50 50 H 0.96988 * 120.00074 * 180.02562 * 21 20 18 51 51 H 1.09000 * 109.50132 * 58.57701 * 26 16 15 52 52 H 1.09006 * 109.49637 * 178.67468 * 26 16 15 53 53 H 1.08999 * 109.59075 * 246.15861 * 27 13 11 54 54 H 1.09000 * 109.58737 * 6.44564 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3708 0.0000 4 6 3.5182 1.3340 0.1467 5 6 4.1188 0.5368 -1.0144 6 6 3.5180 -0.8716 -1.0209 7 6 1.9952 -0.7709 -1.1338 8 1 1.7323 -0.2707 -2.0659 9 6 1.3890 -2.1755 -1.1204 10 6 1.8301 -2.9334 -2.3743 11 6 1.2989 -4.3426 -2.3224 12 8 0.6334 -4.7054 -1.3755 13 7 1.5632 -5.1999 -3.3281 14 6 1.0518 -6.5768 -3.2921 15 6 2.2240 -7.5435 -3.4884 16 6 2.9673 -7.1826 -4.7766 17 6 4.1179 -8.1673 -4.9940 18 6 4.7728 -7.8892 -6.3226 19 1 4.4053 -7.0898 -6.9489 20 6 5.8410 -8.6554 -6.7384 21 7 6.4128 -8.4124 -7.8976 22 14 6.4771 -10.0375 -5.6547 23 1 7.5275 -9.5111 -4.7466 24 1 5.3582 -10.5902 -4.8497 25 1 7.0510 -11.1101 -6.5064 26 6 3.5261 -5.7623 -4.6639 27 6 2.3684 -4.7753 -4.4815 28 1 -0.3634 -1.0081 0.1993 29 1 -0.3634 0.6766 0.7736 30 1 -0.3633 0.3316 -0.9727 31 1 1.5635 1.9257 0.8330 32 1 1.7325 1.8608 -0.9376 33 1 3.7814 0.8566 1.0906 34 1 3.9106 2.3508 0.1314 35 1 5.1997 0.4712 -0.8906 36 1 3.8897 1.0349 -1.9565 37 1 3.7813 -1.3838 -0.0954 38 1 3.9097 -1.4310 -1.8705 39 1 0.3016 -2.1019 -1.1042 40 1 1.7302 -2.7102 -0.2339 41 1 2.9188 -2.9570 -2.4203 42 1 1.4398 -2.4302 -3.2589 43 1 0.3244 -6.7175 -4.0915 44 1 0.5797 -6.7661 -2.3281 45 1 1.8464 -8.5635 -3.5599 46 1 2.9054 -7.4658 -2.6412 47 1 2.2791 -7.2362 -5.6202 48 1 3.7307 -9.1861 -4.9860 49 1 4.8514 -8.0511 -4.1961 50 1 7.1640 -8.9516 -8.1902 51 1 4.1951 -5.7015 -3.8055 52 1 4.0755 -5.5144 -5.5722 53 1 1.7482 -4.7692 -5.3778 54 1 2.7629 -3.7749 -4.3033 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573327627.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:53 Heat of formation + Delta-G solvation = -80.763744 kcal Electronic energy + Delta-G solvation = -28185.738817 eV Core-core repulsion = 24541.101145 eV Total energy + Delta-G solvation = -3644.637672 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.31526 -40.19315 -38.72934 -35.66420 -34.98430 -34.43512 -34.02942 -32.19621 -30.66503 -30.03883 -27.64970 -26.65875 -25.48311 -24.14363 -23.78160 -23.01823 -21.88110 -21.05570 -20.58745 -19.81346 -18.84147 -18.11866 -17.03163 -16.79787 -16.44642 -16.35437 -16.04531 -15.55945 -15.32593 -15.24435 -15.06582 -14.98312 -14.80416 -14.40647 -14.30421 -14.12771 -13.97434 -13.63074 -13.47402 -13.22985 -13.12376 -12.91327 -12.83274 -12.61845 -12.57711 -12.40785 -12.15608 -12.10081 -11.96124 -11.79392 -11.72447 -11.58087 -11.38717 -11.22290 -11.17059 -11.01309 -10.92137 -10.72882 -10.68496 -9.59207 -9.22908 -8.24989 -6.26086 1.35422 1.37817 1.48326 1.64796 2.05152 2.37861 2.94950 3.10802 3.51698 3.80356 3.89528 3.92306 3.99873 4.01626 4.08820 4.13127 4.20797 4.24904 4.32422 4.38945 4.41411 4.47838 4.53709 4.56146 4.62939 4.64800 4.67645 4.73233 4.82037 4.83269 4.88090 4.88688 4.95212 5.01953 5.06026 5.10994 5.12610 5.13357 5.17416 5.24574 5.27107 5.30565 5.34706 5.38494 5.44094 5.52167 5.62810 5.73853 5.75219 6.16938 6.21939 6.34914 6.47254 6.81348 7.19224 7.37837 8.91075 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.017633 B = 0.002478 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.578372 B =11297.894899 C =12295.551329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.554 5.554 3 C 0.055 3.945 4 C -0.116 4.116 5 C -0.122 4.122 6 C -0.117 4.117 7 C 0.092 3.908 8 H 0.047 0.953 9 C -0.090 4.090 10 C -0.134 4.134 11 C 0.510 3.490 12 O -0.588 6.588 13 N -0.609 5.609 14 C 0.115 3.885 15 C -0.122 4.122 16 C -0.070 4.070 17 C -0.008 4.008 18 C -0.513 4.513 19 H 0.044 0.956 20 C 0.005 3.995 21 N -0.951 5.951 22 Si 0.940 3.060 23 H -0.271 1.271 24 H -0.251 1.251 25 H -0.288 1.288 26 C -0.117 4.117 27 C 0.112 3.888 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.028 0.972 31 H 0.080 0.920 32 H 0.034 0.966 33 H 0.061 0.939 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.059 0.941 38 H 0.078 0.922 39 H 0.063 0.937 40 H 0.055 0.945 41 H 0.111 0.889 42 H 0.115 0.885 43 H 0.076 0.924 44 H 0.080 0.920 45 H 0.077 0.923 46 H 0.054 0.946 47 H 0.059 0.941 48 H 0.013 0.987 49 H 0.010 0.990 50 H 0.263 0.737 51 H 0.054 0.946 52 H 0.067 0.933 53 H 0.078 0.922 54 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.121 19.895 14.553 26.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.279 5.279 3 C -0.072 4.072 4 C -0.154 4.154 5 C -0.159 4.159 6 C -0.154 4.154 7 C -0.016 4.016 8 H 0.065 0.935 9 C -0.128 4.128 10 C -0.174 4.174 11 C 0.301 3.699 12 O -0.469 6.469 13 N -0.342 5.342 14 C -0.007 4.007 15 C -0.161 4.161 16 C -0.088 4.088 17 C -0.045 4.045 18 C -0.551 4.551 19 H 0.063 0.937 20 C -0.192 4.192 21 N -0.592 5.592 22 Si 0.764 3.236 23 H -0.196 1.196 24 H -0.175 1.175 25 H -0.214 1.214 26 C -0.155 4.155 27 C -0.010 4.010 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.047 0.953 31 H 0.098 0.902 32 H 0.052 0.948 33 H 0.080 0.920 34 H 0.098 0.902 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.096 0.904 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.129 0.871 42 H 0.133 0.867 43 H 0.095 0.905 44 H 0.098 0.902 45 H 0.096 0.904 46 H 0.073 0.927 47 H 0.077 0.923 48 H 0.032 0.968 49 H 0.029 0.971 50 H 0.072 0.928 51 H 0.073 0.927 52 H 0.086 0.914 53 H 0.097 0.903 54 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -10.186 19.431 15.363 26.783 hybrid contribution 0.392 -0.714 -0.805 1.145 sum -9.794 18.716 14.558 25.655 Atomic orbital electron populations 1.22410 0.87021 1.02518 1.00589 1.61884 1.08059 1.14184 1.43731 1.22140 0.95985 0.88410 1.00675 1.21593 0.94127 1.00755 0.98939 1.21591 1.00313 0.95287 0.98732 1.21723 0.93494 0.97769 1.02461 1.21602 0.95292 0.93035 0.91718 0.93516 1.21321 1.00604 0.94147 0.96733 1.21764 1.03649 0.90617 1.01343 1.21239 0.79269 0.88582 0.80852 1.90649 1.42009 1.79474 1.34787 1.48297 1.52241 1.12216 1.21402 1.21554 0.95859 0.80608 1.02729 1.21939 0.97117 0.99349 0.97652 1.20920 0.96375 0.95202 0.96334 1.19590 0.94641 0.95541 0.94770 1.21450 1.14091 1.16155 1.03419 0.93744 1.25899 0.97047 1.00028 0.96199 1.70046 1.24611 1.42197 1.22361 0.85813 0.79289 0.79364 0.79099 1.19606 1.17482 1.21376 1.21808 0.97256 0.94525 1.01921 1.21943 0.92052 0.99075 0.87964 0.91720 0.90648 0.95310 0.90195 0.94818 0.92003 0.90249 0.91224 0.91760 0.92259 0.90394 0.91882 0.92605 0.87084 0.86674 0.90539 0.90183 0.90429 0.92746 0.92267 0.96826 0.97122 0.92770 0.92671 0.91407 0.90335 0.87131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 8.88 127.69 1.13 1.48 16 2 N -0.55 -9.32 4.75 -897.19 -4.26 -13.58 16 3 C 0.06 0.75 5.46 86.33 0.47 1.22 16 4 C -0.12 -1.46 6.09 30.65 0.19 -1.28 16 5 C -0.12 -1.59 6.00 30.67 0.18 -1.40 16 6 C -0.12 -1.79 5.12 30.65 0.16 -1.64 16 7 C 0.09 1.50 1.89 44.93 0.08 1.58 16 8 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 9 C -0.09 -1.75 3.75 30.60 0.11 -1.64 16 10 C -0.13 -2.42 3.88 29.85 0.12 -2.30 16 11 C 0.51 13.40 7.70 87.66 0.67 14.08 16 12 O -0.59 -19.84 15.37 -3.03 -0.05 -19.89 16 13 N -0.61 -15.64 2.97 -818.84 -2.43 -18.07 16 14 C 0.12 3.10 6.43 86.36 0.56 3.66 16 15 C -0.12 -3.67 5.36 30.67 0.16 -3.50 16 16 C -0.07 -2.47 2.10 -10.77 -0.02 -2.49 16 17 C -0.01 -0.36 3.52 29.85 0.10 -0.25 16 18 C -0.51 -27.98 8.94 25.60 0.23 -27.75 16 19 H 0.04 2.62 7.30 -2.91 -0.02 2.59 16 20 C 0.00 0.27 5.47 84.65 0.46 0.73 16 21 N -0.95 -58.31 13.96 21.45 0.30 -58.01 16 22 Si 0.94 43.94 27.47 68.60 1.88 45.82 16 23 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 24 H -0.25 -11.02 6.54 99.48 0.65 -10.37 16 25 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 26 C -0.12 -3.68 5.19 30.68 0.16 -3.52 16 27 C 0.11 2.58 6.34 86.37 0.55 3.12 16 28 H 0.06 1.11 6.53 -2.39 -0.02 1.10 16 29 H 0.07 0.96 7.96 -2.38 -0.02 0.94 16 30 H 0.03 0.41 8.11 -2.39 -0.02 0.39 16 31 H 0.08 0.96 8.00 -2.39 -0.02 0.94 16 32 H 0.03 0.44 8.14 -2.38 -0.02 0.42 16 33 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 34 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 38 H 0.08 1.07 6.55 -2.39 -0.02 1.05 16 39 H 0.06 1.33 6.17 -2.39 -0.01 1.32 16 40 H 0.06 1.36 8.01 -2.39 -0.02 1.34 16 41 H 0.11 1.74 6.00 -2.39 -0.01 1.72 16 42 H 0.12 1.56 7.94 -2.39 -0.02 1.54 16 43 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.08 2.29 7.00 -2.39 -0.02 2.27 16 45 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 46 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 47 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 48 H 0.01 0.61 7.20 -2.39 -0.02 0.59 16 49 H 0.01 0.47 7.57 -2.39 -0.02 0.45 16 50 H 0.26 15.21 8.31 -92.72 -0.77 14.44 16 51 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 52 H 0.07 2.45 6.91 -2.38 -0.02 2.43 16 53 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 54 H 0.11 1.87 5.93 -2.39 -0.01 1.86 16 Total: -1.00 -68.09 398.74 1.55 -66.54 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: 0.78 Total: 17.10 kcal Atomic # 6 Polarization: -25.24 SS G_CDS: 5.32 Total: -19.91 kcal Atomic # 7 Polarization: -83.27 SS G_CDS: -6.39 Total: -89.66 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -0.05 Total: -19.89 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 1.88 Total: 45.82 kcal Total: -68.09 1.55 -66.54 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573327627.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.226 kcal (2) G-P(sol) polarization free energy of solvation -68.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds