Wall clock time and date at job start Tue Mar 31 2020 13:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46914 * 111.00186 * 2 1 4 4 C 1.52779 * 109.42899 * 187.05214 * 3 2 1 5 5 N 1.47086 * 108.78066 * 306.42510 * 4 3 2 6 6 C 1.34777 * 120.88720 * 231.14464 * 5 4 3 7 7 O 1.21282 * 119.99620 * 179.71455 * 6 5 4 8 8 C 1.50697 * 120.00369 * 359.72063 * 6 5 4 9 9 C 1.52997 * 109.47466 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.47060 * 180.02562 * 9 8 6 11 11 C 1.53001 * 109.46886 * 180.02562 * 10 9 8 12 12 C 1.50697 * 109.47291 * 179.97438 * 11 10 9 13 13 H 1.08006 * 119.99920 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00428 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99563 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00432 * 180.02562 * 14 12 11 17 17 H 1.48508 * 109.47282 * 89.99593 * 16 14 12 18 18 H 1.48498 * 109.47211 * 210.00040 * 16 14 12 19 19 H 1.48506 * 109.46856 * 330.00220 * 16 14 12 20 20 C 1.47083 * 118.22343 * 50.87050 * 5 4 3 21 21 C 1.46849 * 111.00064 * 124.30657 * 2 1 3 22 22 C 1.52979 * 109.55400 * 292.70954 * 21 2 1 23 23 C 1.53017 * 109.44688 * 180.23084 * 22 21 2 24 24 C 1.52987 * 109.46931 * 300.03163 * 23 22 21 25 25 C 1.53006 * 109.50266 * 59.97913 * 24 23 22 26 26 C 1.52970 * 109.57967 * 52.87640 * 21 2 1 27 27 H 1.08998 * 109.47367 * 295.69772 * 1 2 3 28 28 H 1.09007 * 109.46997 * 55.69257 * 1 2 3 29 29 H 1.08999 * 109.47471 * 175.69160 * 1 2 3 30 30 H 1.08997 * 109.48773 * 307.15455 * 3 2 1 31 31 H 1.08999 * 109.48844 * 67.20613 * 3 2 1 32 32 H 1.08996 * 109.55502 * 186.60331 * 4 3 2 33 33 H 1.09000 * 109.45750 * 66.18482 * 4 3 2 34 34 H 1.09002 * 109.47120 * 59.99760 * 8 6 5 35 35 H 1.08998 * 109.46862 * 300.00562 * 8 6 5 36 36 H 1.09002 * 109.47153 * 59.99773 * 9 8 6 37 37 H 1.09001 * 109.46832 * 299.99964 * 9 8 6 38 38 H 1.09001 * 109.47194 * 299.99650 * 10 9 8 39 39 H 1.08992 * 109.47399 * 59.99823 * 10 9 8 40 40 H 1.09001 * 109.47109 * 299.99380 * 11 10 9 41 41 H 1.09002 * 109.47508 * 59.99571 * 11 10 9 42 42 H 0.97000 * 119.99425 * 180.02562 * 15 14 12 43 43 H 1.09000 * 109.63017 * 68.80779 * 20 5 4 44 44 H 1.08990 * 109.63139 * 189.40058 * 20 5 4 45 45 H 1.08997 * 109.47487 * 300.22076 * 22 21 2 46 46 H 1.08994 * 109.47521 * 60.23686 * 22 21 2 47 47 H 1.09004 * 109.46660 * 180.02562 * 23 22 21 48 48 H 1.08994 * 109.47219 * 60.03430 * 23 22 21 49 49 H 1.09005 * 109.46721 * 299.97591 * 24 23 22 50 50 H 1.08999 * 109.46082 * 179.97438 * 24 23 22 51 51 H 1.08997 * 109.47457 * 180.02562 * 25 24 23 52 52 H 1.08999 * 109.46828 * 60.01350 * 25 24 23 53 53 H 1.09002 * 109.47778 * 299.77394 * 26 21 2 54 54 H 1.09007 * 109.47433 * 59.78241 * 26 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 3.5125 1.3335 -0.1769 5 7 4.0865 0.4466 0.8465 6 6 5.1041 0.8594 1.6279 7 8 5.5617 0.1165 2.4703 8 6 5.6733 2.2440 1.4550 9 6 6.8094 2.4573 2.4572 10 6 7.3868 3.8634 2.2820 11 6 8.5233 4.0764 3.2839 12 6 9.0925 5.4610 3.1109 13 1 8.6846 6.1228 2.3611 14 6 10.1339 5.8831 3.9099 15 7 10.6302 5.0775 4.8233 16 14 10.8389 7.5997 3.6960 17 1 10.1081 8.5480 4.5747 18 1 12.2777 7.5932 4.0632 19 1 10.6911 8.0226 2.2802 20 6 3.5162 -0.9006 0.9986 21 6 1.9952 -0.7727 1.1324 22 6 1.6591 -0.0561 2.4415 23 6 2.2135 -0.8602 3.6194 24 6 1.5857 -2.2553 3.6249 25 6 1.9214 -2.9717 2.3152 26 6 1.3668 -2.1674 1.1376 27 1 -0.3634 0.4456 0.9260 28 1 -0.3633 0.5793 -0.8489 29 1 -0.3634 -1.0247 -0.0772 30 1 1.5464 1.9334 -0.8189 31 1 1.7541 1.8537 0.9473 32 1 3.9187 2.3382 -0.0602 33 1 3.7529 0.9514 -1.1690 34 1 4.8910 2.9828 1.6293 35 1 6.0580 2.3547 0.4411 36 1 7.5916 1.7186 2.2824 37 1 6.4250 2.3465 3.4711 38 1 7.7711 3.9746 1.2681 39 1 6.6045 4.6018 2.4570 40 1 8.1394 3.9651 4.2979 41 1 9.3056 3.3379 3.1084 42 1 11.3626 5.3746 5.3856 43 1 3.7572 -1.5014 0.1217 44 1 3.9241 -1.3721 1.8925 45 1 2.1069 0.9377 2.4372 46 1 0.5773 0.0332 2.5396 47 1 1.9739 -0.3501 4.5524 48 1 3.2954 -0.9490 3.5216 49 1 0.5038 -2.1664 3.7232 50 1 1.9811 -2.8282 4.4637 51 1 1.4735 -3.9653 2.3194 52 1 3.0032 -3.0610 2.2169 53 1 0.2849 -2.0782 1.2357 54 1 1.6063 -2.6773 0.2044 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000908572013.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:03 Heat of formation + Delta-G solvation = -74.244863 kcal Electronic energy + Delta-G solvation = -28867.824992 eV Core-core repulsion = 25223.469999 eV Total energy + Delta-G solvation = -3644.354992 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.09498 -40.15911 -37.42340 -36.66831 -35.64659 -34.62881 -32.40349 -31.86267 -31.34937 -29.71606 -28.18446 -26.91996 -25.43013 -24.39096 -23.92918 -23.31351 -21.82532 -21.68748 -20.30285 -18.94280 -18.44342 -18.09295 -17.31213 -16.91885 -16.90362 -16.48171 -16.01475 -15.84035 -15.45489 -15.30647 -15.19917 -14.91410 -14.63461 -14.53368 -14.25674 -13.84524 -13.61529 -13.57297 -13.38256 -13.16869 -13.08509 -13.01737 -12.82680 -12.65180 -12.55505 -12.36063 -12.29066 -12.17039 -12.15769 -12.06383 -11.81770 -11.39581 -11.36173 -11.32748 -11.19443 -11.15851 -11.06749 -10.66001 -10.55546 -9.75316 -9.14794 -8.19101 -6.31394 1.39928 1.42391 1.53509 1.62310 1.96302 2.41635 2.86892 3.13618 3.47028 3.66472 3.67724 3.88659 3.98184 4.00114 4.05974 4.10574 4.15130 4.22305 4.27942 4.34212 4.41991 4.48420 4.53004 4.62202 4.64568 4.65145 4.66777 4.70308 4.74648 4.79627 4.80589 4.85946 4.88170 4.97604 5.01798 5.07330 5.13894 5.16705 5.17141 5.18150 5.30314 5.31753 5.35152 5.36369 5.47784 5.53286 5.56243 5.77082 5.87322 6.06543 6.08763 6.24717 6.40900 6.87088 7.17950 7.38280 8.93314 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.022781 B = 0.002338 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.801786 B =11971.984998 C =12611.145767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.534 5.534 3 C 0.035 3.965 4 C 0.104 3.896 5 N -0.611 5.611 6 C 0.510 3.490 7 O -0.585 6.585 8 C -0.126 4.126 9 C -0.093 4.093 10 C -0.094 4.094 11 C 0.019 3.981 12 C -0.541 4.541 13 H 0.067 0.933 14 C -0.008 4.008 15 N -0.939 5.939 16 Si 0.970 3.030 17 H -0.271 1.271 18 H -0.284 1.284 19 H -0.258 1.258 20 C 0.121 3.879 21 C 0.109 3.891 22 C -0.134 4.134 23 C -0.122 4.122 24 C -0.114 4.114 25 C -0.121 4.121 26 C -0.100 4.100 27 H 0.026 0.974 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.111 0.889 31 H 0.036 0.964 32 H 0.107 0.893 33 H 0.087 0.913 34 H 0.114 0.886 35 H 0.117 0.883 36 H 0.042 0.958 37 H 0.040 0.960 38 H 0.061 0.939 39 H 0.060 0.940 40 H -0.017 1.017 41 H -0.016 1.016 42 H 0.263 0.737 43 H 0.072 0.928 44 H 0.079 0.921 45 H 0.047 0.953 46 H 0.072 0.928 47 H 0.052 0.948 48 H 0.045 0.955 49 H 0.072 0.928 50 H 0.060 0.940 51 H 0.082 0.918 52 H 0.052 0.948 53 H 0.081 0.919 54 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.376 -13.507 -13.502 33.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.258 5.258 3 C -0.093 4.093 4 C -0.018 4.018 5 N -0.344 5.344 6 C 0.301 3.699 7 O -0.465 6.465 8 C -0.166 4.166 9 C -0.132 4.132 10 C -0.132 4.132 11 C -0.018 4.018 12 C -0.579 4.579 13 H 0.085 0.915 14 C -0.205 4.205 15 N -0.579 5.579 16 Si 0.794 3.206 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.182 1.182 20 C -0.002 4.002 21 C 0.018 3.982 22 C -0.173 4.173 23 C -0.161 4.161 24 C -0.151 4.151 25 C -0.159 4.159 26 C -0.138 4.138 27 H 0.044 0.956 28 H 0.098 0.902 29 H 0.099 0.901 30 H 0.129 0.871 31 H 0.054 0.946 32 H 0.125 0.875 33 H 0.106 0.894 34 H 0.132 0.868 35 H 0.135 0.865 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.002 0.998 41 H 0.002 0.998 42 H 0.071 0.929 43 H 0.090 0.910 44 H 0.097 0.903 45 H 0.066 0.934 46 H 0.090 0.910 47 H 0.071 0.929 48 H 0.063 0.937 49 H 0.091 0.909 50 H 0.079 0.921 51 H 0.101 0.899 52 H 0.071 0.929 53 H 0.100 0.900 54 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -26.862 -14.123 -13.408 33.178 hybrid contribution 0.710 1.048 1.401 1.888 sum -26.152 -13.074 -12.007 31.608 Atomic orbital electron populations 1.22511 0.86107 1.03279 1.00943 1.62200 1.08900 1.13269 1.41388 1.22517 0.94706 0.89968 1.02101 1.22040 0.93056 0.95231 0.91486 1.48247 1.33935 1.15787 1.36395 1.21189 0.79168 0.89861 0.79730 1.90671 1.61395 1.57861 1.36577 1.21686 0.99227 0.93107 1.02567 1.21230 0.96787 0.96928 0.98226 1.21435 0.97430 0.94999 0.99294 1.19050 0.93527 0.95282 0.93937 1.21751 1.17033 1.00467 1.18622 0.91515 1.26109 0.97296 1.02241 0.94821 1.70141 1.26871 1.38305 1.22614 0.85375 0.77258 0.78811 0.79160 1.19688 1.20941 1.18233 1.21843 0.92336 0.83750 1.02296 1.21270 0.93427 0.95028 0.88454 1.22022 1.00931 0.98799 0.95522 1.21538 0.99838 0.96901 0.97777 1.21505 1.00937 0.94735 0.97973 1.21595 1.00863 0.99387 0.94077 1.21590 1.00630 0.92568 0.98988 0.95585 0.90157 0.90117 0.87121 0.94568 0.87480 0.89440 0.86797 0.86500 0.93930 0.94108 0.91998 0.92087 0.99834 0.99760 0.92854 0.91022 0.90254 0.93399 0.90982 0.92875 0.93666 0.90932 0.92094 0.89949 0.92929 0.90042 0.90457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 8.77 127.69 1.12 1.30 16 2 N -0.53 -7.06 4.68 -872.84 -4.08 -11.14 16 3 C 0.04 0.44 5.23 86.23 0.45 0.89 16 4 C 0.10 1.48 6.47 86.19 0.56 2.04 16 5 N -0.61 -13.38 2.48 -818.86 -2.03 -15.41 16 6 C 0.51 14.94 7.71 87.66 0.68 15.62 16 7 O -0.58 -22.67 15.42 -3.04 -0.05 -22.72 16 8 C -0.13 -3.33 4.07 29.85 0.12 -3.21 16 9 C -0.09 -3.50 4.50 30.59 0.14 -3.36 16 10 C -0.09 -3.91 5.15 30.59 0.16 -3.75 16 11 C 0.02 1.07 4.97 29.85 0.15 1.22 16 12 C -0.54 -31.65 9.11 25.60 0.23 -31.42 16 13 H 0.07 3.65 7.74 -2.91 -0.02 3.63 16 14 C -0.01 -0.45 5.46 84.65 0.46 0.01 16 15 N -0.94 -59.72 13.29 21.45 0.28 -59.43 16 16 Si 0.97 45.10 29.54 68.60 2.03 47.13 16 17 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 18 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 19 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 20 C 0.12 2.55 4.53 86.34 0.39 2.94 16 21 C 0.11 1.73 0.43 3.59 0.00 1.73 16 22 C -0.13 -2.43 3.94 30.59 0.12 -2.31 16 23 C -0.12 -2.54 5.65 30.60 0.17 -2.37 16 24 C -0.11 -1.78 5.92 30.59 0.18 -1.60 16 25 C -0.12 -1.68 5.65 30.60 0.17 -1.51 16 26 C -0.10 -1.25 4.26 30.59 0.13 -1.12 16 27 H 0.03 0.27 6.52 -2.39 -0.02 0.25 16 28 H 0.08 0.59 8.08 -2.38 -0.02 0.57 16 29 H 0.08 0.66 6.22 -2.39 -0.01 0.64 16 30 H 0.11 0.89 8.06 -2.39 -0.02 0.87 16 31 H 0.04 0.53 6.11 -2.39 -0.01 0.52 16 32 H 0.11 1.23 6.02 -2.39 -0.01 1.21 16 33 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.11 2.43 7.65 -2.39 -0.02 2.42 16 35 H 0.12 2.48 8.01 -2.39 -0.02 2.46 16 36 H 0.04 1.75 8.10 -2.39 -0.02 1.73 16 37 H 0.04 1.68 8.10 -2.39 -0.02 1.66 16 38 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 39 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 40 H -0.02 -1.03 8.14 -2.39 -0.02 -1.04 16 41 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 42 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 43 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.08 2.08 3.76 -2.39 -0.01 2.07 16 45 H 0.05 1.04 5.92 -2.39 -0.01 1.03 16 46 H 0.07 1.15 6.61 -2.39 -0.02 1.13 16 47 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 48 H 0.04 1.23 6.26 -2.39 -0.01 1.21 16 49 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 50 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 51 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 52 H 0.05 0.90 6.57 -2.39 -0.02 0.88 16 53 H 0.08 0.83 6.34 -2.39 -0.02 0.82 16 54 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 Total: -1.00 -75.07 392.49 2.24 -72.83 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: 0.86 Total: 13.66 kcal Atomic # 6 Polarization: -30.15 SS G_CDS: 5.23 Total: -24.92 kcal Atomic # 7 Polarization: -80.15 SS G_CDS: -5.83 Total: -85.98 kcal Atomic # 8 Polarization: -22.67 SS G_CDS: -0.05 Total: -22.72 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -75.07 2.24 -72.83 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908572013.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.410 kcal (2) G-P(sol) polarization free energy of solvation -75.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds