Wall clock time and date at job start Tue Mar 31 2020 13:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34777 * 120.00653 * 2 1 4 4 O 1.21281 * 119.99584 * 5.02482 * 3 2 1 5 5 C 1.50697 * 120.00215 * 185.02580 * 3 2 1 6 6 C 1.54243 * 108.89665 * 283.94608 * 5 3 2 7 7 C 1.50473 * 108.52605 * 159.26316 * 6 5 3 8 8 C 1.54064 * 112.49629 * 94.15189 * 7 6 5 9 9 C 1.54070 * 112.81905 * 318.28683 * 8 7 6 10 10 C 1.50474 * 112.49154 * 318.28425 * 9 8 7 11 11 C 1.45548 * 108.89437 * 161.06567 * 5 3 2 12 12 C 1.46501 * 119.99605 * 179.97438 * 2 1 3 13 13 H 1.09002 * 109.49211 * 184.33347 * 12 2 1 14 14 C 1.52564 * 109.48973 * 64.28804 * 12 2 1 15 15 C 1.47097 * 114.32844 * 155.01604 * 14 12 2 16 16 C 1.54862 * 110.17926 * 62.88659 * 15 14 12 17 17 N 1.44664 * 109.55922 * 288.47280 * 16 15 14 18 18 C 1.36941 * 118.81071 * 270.94562 * 17 16 15 19 19 H 1.08006 * 119.99362 * 139.29484 * 18 17 16 20 20 C 1.38810 * 120.00306 * 319.29869 * 18 17 16 21 21 N 1.31617 * 119.99686 * 159.52944 * 20 18 17 22 22 Si 1.86801 * 120.00011 * 339.52480 * 20 18 17 23 23 H 1.48502 * 109.46705 * 95.42575 * 22 20 18 24 24 H 1.48496 * 109.47290 * 215.42758 * 22 20 18 25 25 H 1.48504 * 109.46997 * 335.43258 * 22 20 18 26 26 C 1.47599 * 122.54088 * 90.96249 * 17 16 15 27 27 C 1.50880 * 109.49480 * 304.40249 * 12 2 1 28 28 H 1.09006 * 109.47159 * 274.94675 * 1 2 3 29 29 H 1.09003 * 109.46451 * 34.94083 * 1 2 3 30 30 H 1.08996 * 109.47529 * 154.93892 * 1 2 3 31 31 H 1.08994 * 108.87669 * 42.46000 * 5 3 2 32 32 H 1.08992 * 109.63009 * 278.97973 * 6 5 3 33 33 H 1.09005 * 109.62283 * 39.55627 * 6 5 3 34 34 H 1.09005 * 108.87368 * 333.37923 * 7 6 5 35 35 H 1.09002 * 108.87808 * 214.93288 * 7 6 5 36 36 H 1.08999 * 108.81268 * 197.42348 * 8 7 6 37 37 H 1.09000 * 108.81215 * 79.14763 * 8 7 6 38 38 H 1.08998 * 108.87247 * 197.50760 * 9 8 7 39 39 H 1.08993 * 108.87706 * 79.06397 * 9 8 7 40 40 H 1.08997 * 109.62922 * 334.44217 * 10 9 8 41 41 H 1.09002 * 109.62571 * 213.86128 * 10 9 8 42 42 H 1.08999 * 108.89614 * 303.44187 * 11 5 3 43 43 H 1.08997 * 108.89344 * 61.93201 * 11 5 3 44 44 H 1.09000 * 108.51139 * 33.76339 * 14 12 2 45 45 H 1.08998 * 108.39515 * 276.18465 * 14 12 2 46 46 H 1.08998 * 109.32964 * 183.06350 * 15 14 12 47 47 H 1.09000 * 109.32623 * 302.71180 * 15 14 12 48 48 H 1.08997 * 109.44844 * 48.69267 * 16 15 14 49 49 H 1.09004 * 109.44549 * 168.60976 * 16 15 14 50 50 H 0.97006 * 119.99942 * 179.97438 * 21 20 18 51 51 H 1.09003 * 108.94449 * 197.17015 * 26 17 16 52 52 H 1.09001 * 108.88112 * 78.49510 * 26 17 16 53 53 H 1.08996 * 109.36505 * 332.05257 * 27 12 2 54 54 H 1.09008 * 109.35975 * 91.79005 * 27 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 1.5361 2.2155 0.0920 5 6 3.6416 1.1695 -0.1143 6 6 4.2465 0.7569 1.2432 7 6 5.6511 0.2689 1.0122 8 6 6.7005 1.3801 1.2062 9 6 6.2641 2.7269 0.5983 10 6 5.6065 2.5657 -0.7455 11 6 4.0799 2.4911 -0.5381 12 6 2.1974 -1.2688 0.0006 13 1 3.2666 -1.0715 0.0781 14 6 1.9115 -2.0221 -1.2949 15 6 2.9645 -2.9703 -1.6896 16 6 3.1086 -4.0833 -0.6225 17 7 3.7164 -3.5349 0.5703 18 6 5.0817 -3.5380 0.6763 19 1 5.5930 -2.6819 1.0914 20 6 5.8085 -4.6412 0.2503 21 7 7.0883 -4.5173 -0.0311 22 14 4.9704 -6.3015 0.0766 23 1 4.5426 -6.4950 -1.3322 24 1 5.9199 -7.3777 0.4579 25 1 3.7821 -6.3516 0.9660 26 6 2.9218 -2.9717 1.6792 27 6 1.7531 -2.1061 1.1745 28 1 -0.3634 0.0886 1.0239 29 1 -0.3632 0.8425 -0.5886 30 1 -0.3634 -0.9309 -0.4353 31 1 3.9391 0.4405 -0.8680 32 1 4.2630 1.6165 1.9131 33 1 3.6490 -0.0419 1.6826 34 1 5.7281 -0.1152 -0.0050 35 1 5.8622 -0.5413 1.7101 36 1 7.6335 1.0683 0.7366 37 1 6.8751 1.5163 2.2734 38 1 7.1412 3.3645 0.4876 39 1 5.5628 3.2100 1.2785 40 1 5.9573 1.6478 -1.2171 41 1 5.8488 3.4208 -1.3766 42 1 3.5836 2.7440 -1.4751 43 1 3.7907 3.2189 0.2200 44 1 1.7822 -1.2952 -2.0967 45 1 0.9782 -2.5721 -1.1742 46 1 2.7042 -3.4205 -2.6475 47 1 3.9110 -2.4385 -1.7863 48 1 2.1241 -4.4837 -0.3805 49 1 3.7386 -4.8820 -1.0139 50 1 7.5963 -5.2884 -0.3284 51 1 3.5714 -2.3593 2.3047 52 1 2.5230 -3.7901 2.2786 53 1 1.4147 -1.4517 1.9777 54 1 0.9326 -2.7541 0.8662 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948242338.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:31 Heat of formation + Delta-G solvation = -42.219861 kcal Electronic energy + Delta-G solvation = -31053.293373 eV Core-core repulsion = 27410.327089 eV Total energy + Delta-G solvation = -3642.966284 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.91037 -39.73910 -38.84631 -36.86766 -34.42825 -33.57692 -33.51199 -33.01469 -32.26562 -28.56793 -27.75992 -26.25109 -25.80725 -25.32706 -24.78004 -22.14565 -21.64236 -21.18181 -20.15416 -19.78199 -18.60316 -18.16889 -17.49575 -17.07648 -16.69467 -16.37168 -16.10012 -15.61295 -15.34798 -15.16916 -14.89562 -14.80991 -14.61895 -14.48360 -14.19230 -13.91202 -13.86695 -13.65291 -13.43724 -13.20140 -13.09947 -13.05319 -12.97899 -12.69820 -12.39202 -12.22970 -12.02889 -11.95779 -11.76566 -11.67154 -11.53430 -11.50709 -11.40451 -11.37012 -11.29550 -11.17280 -11.07950 -10.56449 -10.53021 -9.64174 -8.58867 -8.08636 -5.48764 1.35061 1.46657 1.55616 1.57536 2.03890 2.49583 3.18147 3.35659 3.45098 3.64061 3.73104 3.83304 4.00958 4.08314 4.21708 4.23609 4.31777 4.32696 4.35938 4.38078 4.41880 4.46795 4.47888 4.54513 4.62826 4.66709 4.73276 4.81048 4.89721 4.92516 4.94715 4.95992 5.01794 5.07936 5.12131 5.13361 5.17136 5.22284 5.25274 5.28484 5.32261 5.36094 5.38244 5.40134 5.40504 5.50797 5.57108 5.61877 5.67792 6.08252 6.34393 6.39139 7.15377 7.15842 7.77299 8.14486 9.09933 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.012092 B = 0.005738 C = 0.004343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.942752 B = 4878.497660 C = 6445.726265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.606 5.606 3 C 0.515 3.485 4 O -0.580 6.580 5 C -0.093 4.093 6 C -0.092 4.092 7 C -0.106 4.106 8 C -0.114 4.114 9 C -0.113 4.113 10 C -0.112 4.112 11 C -0.098 4.098 12 C 0.142 3.858 13 H 0.097 0.903 14 C -0.109 4.109 15 C -0.130 4.130 16 C 0.138 3.862 17 N -0.610 5.610 18 C -0.244 4.244 19 H 0.054 0.946 20 C -0.016 4.016 21 N -0.947 5.947 22 Si 0.934 3.066 23 H -0.280 1.280 24 H -0.318 1.318 25 H -0.261 1.261 26 C 0.149 3.851 27 C -0.130 4.130 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.047 0.953 35 H 0.046 0.954 36 H 0.053 0.947 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.062 0.938 40 H 0.058 0.942 41 H 0.079 0.921 42 H 0.054 0.946 43 H 0.064 0.936 44 H 0.058 0.942 45 H 0.075 0.925 46 H 0.071 0.929 47 H 0.042 0.958 48 H 0.061 0.939 49 H 0.026 0.974 50 H 0.258 0.742 51 H 0.049 0.951 52 H 0.027 0.973 53 H 0.078 0.922 54 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.226 9.818 -0.513 14.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.337 5.337 3 C 0.304 3.696 4 O -0.460 6.460 5 C -0.114 4.114 6 C -0.130 4.130 7 C -0.143 4.143 8 C -0.152 4.152 9 C -0.151 4.151 10 C -0.149 4.149 11 C -0.135 4.135 12 C 0.039 3.961 13 H 0.115 0.885 14 C -0.147 4.147 15 C -0.171 4.171 16 C 0.013 3.987 17 N -0.334 5.334 18 C -0.375 4.375 19 H 0.071 0.929 20 C -0.212 4.212 21 N -0.592 5.592 22 Si 0.765 3.235 23 H -0.207 1.207 24 H -0.248 1.248 25 H -0.185 1.185 26 C 0.024 3.976 27 C -0.170 4.170 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.110 0.890 31 H 0.101 0.899 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.097 0.903 42 H 0.073 0.927 43 H 0.083 0.917 44 H 0.076 0.924 45 H 0.093 0.907 46 H 0.089 0.911 47 H 0.061 0.939 48 H 0.079 0.921 49 H 0.044 0.956 50 H 0.067 0.933 51 H 0.067 0.933 52 H 0.045 0.955 53 H 0.097 0.903 54 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.484 10.278 -0.484 14.689 hybrid contribution 0.253 -1.355 -0.200 1.393 sum -10.231 8.923 -0.684 13.593 Atomic orbital electron populations 1.21672 0.78724 1.03261 1.02119 1.48187 1.07526 1.05878 1.72125 1.21084 0.90763 0.82913 0.74824 1.90620 1.71209 1.32342 1.51842 1.20262 0.90508 1.00615 1.00016 1.21236 0.96101 1.01002 0.94625 1.21144 0.94196 0.97668 1.01330 1.21896 0.97809 0.94551 1.00904 1.21315 1.00785 0.96548 0.96416 1.21298 0.93415 1.02325 0.97863 1.20268 0.96623 0.95291 1.01366 1.20790 0.97500 0.82190 0.95621 0.88530 1.20649 0.99541 0.98019 0.96483 1.21186 0.98617 0.98203 0.99048 1.21206 0.96206 0.94273 0.87048 1.43998 1.02276 1.71734 1.15439 1.18760 0.81820 0.98424 1.38447 0.92889 1.26026 0.95241 1.00423 0.99508 1.69970 1.09609 1.30753 1.48845 0.86001 0.78059 0.81642 0.77809 1.20712 1.24790 1.18533 1.21272 0.92059 0.95001 0.89254 1.22110 0.98790 0.98260 0.97814 0.92361 0.92075 0.89034 0.89853 0.90763 0.92004 0.93433 0.93513 0.92780 0.91871 0.91011 0.91929 0.92329 0.90259 0.92706 0.91695 0.92372 0.90662 0.91084 0.93937 0.92090 0.95624 0.93313 0.93282 0.95513 0.90332 0.90329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.81 9.53 127.77 1.22 3.02 16 2 N -0.61 -15.96 2.60 -827.30 -2.15 -18.11 16 3 C 0.51 15.56 6.71 87.66 0.59 16.15 16 4 O -0.58 -20.48 15.65 -3.03 -0.05 -20.52 16 5 C -0.09 -2.61 1.23 -13.40 -0.02 -2.63 16 6 C -0.09 -2.59 4.19 30.20 0.13 -2.46 16 7 C -0.11 -3.25 5.31 30.14 0.16 -3.09 16 8 C -0.11 -2.94 5.85 31.32 0.18 -2.76 16 9 C -0.11 -2.48 5.31 30.14 0.16 -2.32 16 10 C -0.11 -2.55 5.61 30.20 0.17 -2.38 16 11 C -0.10 -2.52 3.91 28.74 0.11 -2.41 16 12 C 0.14 3.87 1.13 44.16 0.05 3.92 16 13 H 0.10 3.14 3.92 -2.39 -0.01 3.13 16 14 C -0.11 -2.85 4.15 28.61 0.12 -2.73 16 15 C -0.13 -4.19 5.75 29.39 0.17 -4.02 16 16 C 0.14 5.16 4.48 87.36 0.39 5.55 16 17 N -0.61 -24.99 1.81 -698.18 -1.26 -26.25 16 18 C -0.24 -12.42 9.70 84.03 0.81 -11.60 16 19 H 0.05 2.96 7.47 -2.91 -0.02 2.93 16 20 C -0.02 -0.86 5.29 84.86 0.45 -0.41 16 21 N -0.95 -56.30 13.97 21.65 0.30 -56.00 16 22 Si 0.93 44.25 25.04 68.60 1.72 45.97 16 23 H -0.28 -12.73 6.72 99.48 0.67 -12.06 16 24 H -0.32 -15.72 7.11 99.48 0.71 -15.02 16 25 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 26 C 0.15 5.02 6.24 86.49 0.54 5.56 16 27 C -0.13 -3.38 4.65 30.22 0.14 -3.24 16 28 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 29 H 0.06 1.40 7.65 -2.39 -0.02 1.38 16 30 H 0.09 1.55 7.21 -2.39 -0.02 1.53 16 31 H 0.08 2.52 6.42 -2.39 -0.02 2.50 16 32 H 0.07 1.97 6.98 -2.39 -0.02 1.95 16 33 H 0.06 1.84 6.41 -2.38 -0.02 1.83 16 34 H 0.05 1.65 6.63 -2.38 -0.02 1.63 16 35 H 0.05 1.65 7.56 -2.39 -0.02 1.64 16 36 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.06 1.34 6.63 -2.39 -0.02 1.33 16 40 H 0.06 1.48 6.98 -2.39 -0.02 1.47 16 41 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.05 1.45 8.10 -2.39 -0.02 1.43 16 43 H 0.06 1.75 7.17 -2.39 -0.02 1.73 16 44 H 0.06 1.47 8.04 -2.39 -0.02 1.45 16 45 H 0.07 1.67 6.97 -2.39 -0.02 1.65 16 46 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 47 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 48 H 0.06 1.97 8.05 -2.39 -0.02 1.95 16 49 H 0.03 1.10 3.33 -2.39 -0.01 1.10 16 50 H 0.26 14.80 8.31 -92.70 -0.77 14.03 16 51 H 0.05 1.74 7.89 -2.39 -0.02 1.72 16 52 H 0.03 0.89 8.14 -2.39 -0.02 0.88 16 53 H 0.08 1.88 7.95 -2.39 -0.02 1.86 16 54 H 0.08 1.78 7.31 -2.38 -0.02 1.76 16 Total: -1.00 -62.23 381.15 4.76 -57.47 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: 0.82 Total: 23.28 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: 5.37 Total: -5.83 kcal Atomic # 7 Polarization: -97.25 SS G_CDS: -3.11 Total: -100.36 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: -0.05 Total: -20.52 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 1.72 Total: 45.97 kcal Total: -62.23 4.76 -57.47 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948242338.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.250 kcal (2) G-P(sol) polarization free energy of solvation -62.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds