Wall clock time and date at job start Tue Mar 31 2020 13:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36938 * 119.99680 * 2 1 4 4 H 1.07995 * 119.99746 * 159.54443 * 3 2 1 5 5 C 1.38818 * 119.99991 * 339.27125 * 3 2 1 6 6 N 1.31615 * 119.99875 * 345.38607 * 5 3 2 7 7 Si 1.86799 * 119.99680 * 165.38947 * 5 3 2 8 8 H 1.48503 * 109.47019 * 94.72291 * 7 5 3 9 9 H 1.48503 * 109.46959 * 214.72084 * 7 5 3 10 10 H 1.48493 * 109.47584 * 334.72441 * 7 5 3 11 11 C 1.46494 * 120.00249 * 180.02562 * 2 1 3 12 12 H 1.09011 * 110.64200 * 183.13993 * 11 2 1 13 13 C 1.55158 * 110.71963 * 306.47079 * 11 2 1 14 14 C 1.54906 * 101.58164 * 153.87039 * 13 11 2 15 15 N 1.47424 * 104.83270 * 322.98725 * 14 13 11 16 16 C 1.34776 * 125.65308 * 204.09444 * 15 14 13 17 17 O 1.21281 * 120.00098 * 180.02562 * 16 15 14 18 18 C 1.50705 * 119.99800 * 0.04167 * 16 15 14 19 19 C 1.52997 * 109.46853 * 179.97438 * 18 16 15 20 20 C 1.53006 * 109.46833 * 180.02562 * 19 18 16 21 21 C 1.54243 * 108.89359 * 297.88509 * 20 19 18 22 22 C 1.50476 * 108.52210 * 159.26876 * 21 20 19 23 23 C 1.54059 * 112.50304 * 94.14730 * 22 21 20 24 24 C 1.54060 * 112.81663 * 318.28524 * 23 22 21 25 25 C 1.50478 * 112.49721 * 318.27993 * 24 23 22 26 26 C 1.45542 * 108.89328 * 175.00203 * 20 19 18 27 27 C 1.47021 * 108.70109 * 24.13390 * 15 14 13 28 28 H 1.08999 * 109.47351 * 84.83058 * 1 2 3 29 29 H 1.09004 * 109.46805 * 204.82397 * 1 2 3 30 30 H 1.09000 * 109.47470 * 324.82277 * 1 2 3 31 31 H 0.96999 * 119.99886 * 179.97438 * 6 5 3 32 32 H 1.08998 * 111.00219 * 271.94395 * 13 11 2 33 33 H 1.08997 * 110.99929 * 35.79471 * 13 11 2 34 34 H 1.09005 * 110.36578 * 204.15927 * 14 13 11 35 35 H 1.08999 * 110.46651 * 81.87884 * 14 13 11 36 36 H 1.08995 * 109.47224 * 300.00097 * 18 16 15 37 37 H 1.08999 * 109.46755 * 60.00522 * 18 16 15 38 38 H 1.09002 * 109.47685 * 300.00327 * 19 18 16 39 39 H 1.09003 * 109.47330 * 60.00413 * 19 18 16 40 40 H 1.09003 * 108.87440 * 56.39681 * 20 19 18 41 41 H 1.09003 * 109.62868 * 278.97072 * 21 20 19 42 42 H 1.09001 * 109.63072 * 39.55348 * 21 20 19 43 43 H 1.09003 * 108.87514 * 333.36746 * 22 21 20 44 44 H 1.09001 * 108.87175 * 214.92773 * 22 21 20 45 45 H 1.09002 * 108.81410 * 197.41742 * 23 22 21 46 46 H 1.09007 * 108.81587 * 79.14317 * 23 22 21 47 47 H 1.09003 * 108.87828 * 197.50894 * 24 23 22 48 48 H 1.08993 * 108.88159 * 79.05902 * 24 23 22 49 49 H 1.09001 * 109.62655 * 334.44482 * 25 24 23 50 50 H 1.08999 * 109.79138 * 213.96485 * 25 24 23 51 51 H 1.08999 * 108.89606 * 303.43834 * 26 20 19 52 52 H 1.08999 * 108.89774 * 62.03003 * 26 20 19 53 53 H 1.08996 * 109.88505 * 239.51929 * 27 15 14 54 54 H 1.09002 * 110.01553 * 118.42621 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1785 1.2155 0.3269 5 6 1.5228 2.3492 -0.4255 6 7 0.3896 2.2804 -1.0914 7 14 2.2879 4.0121 -0.0531 8 1 3.1121 4.4479 -1.2090 9 1 1.2135 5.0076 0.1920 10 1 3.1463 3.9031 1.1537 11 6 2.1975 -1.2686 -0.0006 12 1 3.2718 -1.0921 0.0554 13 6 1.7250 -2.1759 1.1660 14 6 2.0501 -3.5864 0.6144 15 7 1.7502 -3.5064 -0.8267 16 6 1.4407 -4.5483 -1.6237 17 8 1.2119 -4.3646 -2.8005 18 6 1.3786 -5.9415 -1.0525 19 6 1.0088 -6.9306 -2.1597 20 6 0.9451 -8.3450 -1.5796 21 6 2.3397 -8.7283 -1.0438 22 6 2.1792 -9.8467 -0.0499 23 6 2.3589 -11.2358 -0.6913 24 6 1.6766 -11.3511 -2.0678 25 6 0.3196 -10.7014 -2.0940 26 6 0.4777 -9.2574 -2.6127 27 6 1.8455 -2.1020 -1.2508 28 1 -0.3634 0.0926 -1.0235 29 1 -0.3633 -0.9328 0.4315 30 1 -0.3634 0.8400 0.5920 31 1 -0.0485 3.0932 -1.3884 32 1 2.2918 -1.9713 2.0743 33 1 0.6552 -2.0618 1.3409 34 1 1.4186 -4.3355 1.0922 35 1 3.1026 -3.8233 0.7703 36 1 2.3505 -6.2075 -0.6369 37 1 0.6247 -5.9785 -0.2662 38 1 0.0368 -6.6644 -2.5750 39 1 1.7624 -6.8938 -2.9464 40 1 0.2355 -8.3551 -0.7522 41 1 2.9706 -9.0595 -1.8687 42 1 2.7938 -7.8664 -0.5549 43 1 1.1835 -9.7874 0.3898 44 1 2.9196 -9.7248 0.7407 45 1 1.9361 -11.9880 -0.0252 46 1 3.4244 -11.4333 -0.8095 47 1 1.5675 -12.4059 -2.3201 48 1 2.3100 -10.8751 -2.8163 49 1 -0.0981 -10.6852 -1.0874 50 1 -0.3433 -11.2579 -2.7565 51 1 -0.4861 -8.9078 -2.9827 52 1 1.1929 -9.2556 -3.4352 53 1 0.8902 -1.7723 -1.6591 54 1 2.6274 -1.9914 -2.0022 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971955032.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:43 Heat of formation + Delta-G solvation = -54.818598 kcal Electronic energy + Delta-G solvation = -28020.946900 eV Core-core repulsion = 24377.434294 eV Total energy + Delta-G solvation = -3643.512606 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.18499 -40.10080 -38.88842 -36.54192 -35.38201 -33.51453 -33.01963 -31.66147 -30.96677 -29.37907 -28.09054 -26.72867 -25.58098 -24.88587 -23.86415 -22.86888 -21.07480 -20.86707 -20.21280 -19.87851 -18.96631 -18.10556 -17.49821 -16.79358 -16.69337 -16.32337 -16.04765 -15.58701 -15.35282 -15.08511 -14.92092 -14.70988 -14.52408 -14.34002 -13.89961 -13.79327 -13.67995 -13.42711 -13.23568 -13.12088 -13.00776 -12.85598 -12.75796 -12.72139 -12.49436 -12.42234 -12.19837 -12.10752 -11.98932 -11.79558 -11.48760 -11.40884 -11.34858 -11.23465 -11.14743 -11.08964 -10.95558 -10.75657 -10.64557 -9.62464 -8.85853 -7.85017 -5.32965 1.47074 1.47677 1.58107 1.66365 2.03278 2.50941 3.27194 3.50321 3.59379 3.72390 3.80184 3.85468 3.95402 4.07358 4.17637 4.19065 4.28044 4.36236 4.39414 4.43261 4.47110 4.47972 4.50144 4.56362 4.62860 4.64642 4.75800 4.80085 4.91025 4.93868 4.98877 5.00265 5.06687 5.16521 5.19267 5.19782 5.25222 5.25803 5.31277 5.35826 5.38152 5.42522 5.44090 5.45003 5.47219 5.57694 5.62789 5.66774 5.68475 5.69124 6.28752 6.63207 7.10658 7.20091 7.82686 8.26652 9.18451 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.035580 B = 0.002084 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.762897 B =13433.190724 C =13790.390743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.603 5.603 3 C -0.264 4.264 4 H 0.081 0.919 5 C -0.058 4.058 6 N -0.941 5.941 7 Si 0.973 3.027 8 H -0.289 1.289 9 H -0.295 1.295 10 H -0.263 1.263 11 C 0.164 3.836 12 H 0.083 0.917 13 C -0.141 4.141 14 C 0.106 3.894 15 N -0.616 5.616 16 C 0.511 3.489 17 O -0.602 6.602 18 C -0.122 4.122 19 C -0.098 4.098 20 C -0.074 4.074 21 C -0.115 4.115 22 C -0.117 4.117 23 C -0.117 4.117 24 C -0.119 4.119 25 C -0.113 4.113 26 C -0.115 4.115 27 C 0.096 3.904 28 H -0.008 1.008 29 H 0.034 0.966 30 H 0.020 0.980 31 H 0.247 0.753 32 H 0.102 0.898 33 H 0.067 0.933 34 H 0.107 0.893 35 H 0.095 0.905 36 H 0.122 0.878 37 H 0.116 0.884 38 H 0.048 0.952 39 H 0.050 0.950 40 H 0.078 0.922 41 H 0.058 0.942 42 H 0.074 0.926 43 H 0.064 0.936 44 H 0.064 0.936 45 H 0.061 0.939 46 H 0.057 0.943 47 H 0.059 0.941 48 H 0.053 0.947 49 H 0.069 0.931 50 H 0.062 0.938 51 H 0.052 0.948 52 H 0.052 0.948 53 H 0.029 0.971 54 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.631 -28.725 6.658 29.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.324 5.324 3 C -0.394 4.394 4 H 0.098 0.902 5 C -0.253 4.253 6 N -0.588 5.588 7 Si 0.801 3.199 8 H -0.217 1.217 9 H -0.222 1.222 10 H -0.187 1.187 11 C 0.056 3.944 12 H 0.101 0.899 13 C -0.180 4.180 14 C -0.016 4.016 15 N -0.349 5.349 16 C 0.302 3.698 17 O -0.483 6.483 18 C -0.161 4.161 19 C -0.136 4.136 20 C -0.093 4.093 21 C -0.152 4.152 22 C -0.154 4.154 23 C -0.155 4.155 24 C -0.157 4.157 25 C -0.150 4.150 26 C -0.153 4.153 27 C -0.030 4.030 28 H 0.011 0.989 29 H 0.052 0.948 30 H 0.039 0.961 31 H 0.057 0.943 32 H 0.120 0.880 33 H 0.085 0.915 34 H 0.126 0.874 35 H 0.113 0.887 36 H 0.140 0.860 37 H 0.134 0.866 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.096 0.904 41 H 0.076 0.924 42 H 0.092 0.908 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.080 0.920 46 H 0.075 0.925 47 H 0.078 0.922 48 H 0.072 0.928 49 H 0.088 0.912 50 H 0.081 0.919 51 H 0.071 0.929 52 H 0.071 0.929 53 H 0.048 0.952 54 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 3.398 -28.546 5.966 29.360 hybrid contribution -0.069 1.665 -0.850 1.871 sum 3.329 -26.881 5.116 27.566 Atomic orbital electron populations 1.20457 0.82932 0.96032 0.97063 1.44161 1.01974 1.01177 1.85059 1.19659 0.97592 0.85853 1.36316 0.90171 1.25856 0.98611 1.02133 0.98714 1.70286 1.20439 1.27300 1.40785 0.85174 0.77194 0.79427 0.78131 1.21656 1.22191 1.18741 1.21588 0.96260 0.84735 0.91845 0.89933 1.23222 1.02304 0.93639 0.98866 1.22575 1.02742 0.98154 0.78083 1.48726 1.68168 1.06281 1.11762 1.21474 0.75190 0.87715 0.85409 1.90671 1.52236 1.86493 1.18934 1.21793 1.06206 0.87742 1.00362 1.21435 1.01196 0.94076 0.96889 1.20067 0.98022 0.92568 0.98621 1.21498 0.95952 0.98662 0.99137 1.21314 1.02298 0.93822 0.98007 1.21913 1.00266 0.97143 0.96134 1.21336 0.96345 1.00435 0.97570 1.21285 0.97235 0.94806 1.01671 1.20530 1.00857 0.95493 0.98373 1.22460 0.99196 0.81823 0.99516 0.98923 0.94818 0.96112 0.94349 0.87997 0.91470 0.87445 0.88672 0.86050 0.86616 0.93339 0.93152 0.90363 0.92353 0.90795 0.91746 0.91685 0.91996 0.92450 0.92180 0.92800 0.91221 0.91898 0.92896 0.92926 0.95221 0.94377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.05 7.80 127.77 1.00 10.05 16 2 N -0.60 -29.74 2.93 -696.15 -2.04 -31.79 16 3 C -0.26 -14.28 9.63 84.03 0.81 -13.47 16 4 H 0.08 4.10 7.82 -2.91 -0.02 4.07 16 5 C -0.06 -3.28 5.07 84.86 0.43 -2.85 16 6 N -0.94 -56.94 10.67 21.65 0.23 -56.71 16 7 Si 0.97 45.04 29.58 68.60 2.03 47.07 16 8 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 9 H -0.30 -13.82 7.11 99.48 0.71 -13.12 16 10 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 11 C 0.16 6.33 3.45 46.18 0.16 6.49 16 12 H 0.08 3.08 7.91 -2.38 -0.02 3.06 16 13 C -0.14 -3.90 6.59 31.99 0.21 -3.69 16 14 C 0.11 2.22 6.69 86.85 0.58 2.81 16 15 N -0.62 -19.11 3.33 -811.80 -2.70 -21.81 16 16 C 0.51 16.08 7.85 87.66 0.69 16.77 16 17 O -0.60 -25.38 16.31 -3.03 -0.05 -25.43 16 18 C -0.12 -2.31 4.46 29.85 0.13 -2.18 16 19 C -0.10 -1.98 3.90 30.60 0.12 -1.87 16 20 C -0.07 -1.05 1.72 -12.65 -0.02 -1.07 16 21 C -0.12 -1.39 4.91 30.20 0.15 -1.24 16 22 C -0.12 -1.17 5.31 30.14 0.16 -1.01 16 23 C -0.12 -1.18 5.85 31.31 0.18 -1.00 16 24 C -0.12 -1.34 5.31 30.14 0.16 -1.18 16 25 C -0.11 -1.33 5.61 30.20 0.17 -1.16 16 26 C -0.12 -1.69 4.44 28.74 0.13 -1.56 16 27 C 0.10 3.89 6.51 86.73 0.56 4.45 16 28 H -0.01 -0.44 7.33 -2.39 -0.02 -0.45 16 29 H 0.03 1.44 6.03 -2.38 -0.01 1.43 16 30 H 0.02 1.10 7.23 -2.39 -0.02 1.09 16 31 H 0.25 14.57 8.31 -92.71 -0.77 13.79 16 32 H 0.10 2.38 8.14 -2.39 -0.02 2.37 16 33 H 0.07 2.03 6.05 -2.39 -0.01 2.01 16 34 H 0.11 1.53 7.48 -2.38 -0.02 1.51 16 35 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.12 1.66 6.09 -2.39 -0.01 1.65 16 37 H 0.12 1.66 7.85 -2.39 -0.02 1.64 16 38 H 0.05 1.18 8.03 -2.39 -0.02 1.16 16 39 H 0.05 1.20 8.10 -2.39 -0.02 1.18 16 40 H 0.08 0.98 7.46 -2.39 -0.02 0.96 16 41 H 0.06 0.80 6.98 -2.39 -0.02 0.78 16 42 H 0.07 0.80 5.74 -2.39 -0.01 0.79 16 43 H 0.06 0.62 6.63 -2.39 -0.02 0.60 16 44 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 45 H 0.06 0.56 8.14 -2.39 -0.02 0.55 16 46 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 47 H 0.06 0.61 8.14 -2.39 -0.02 0.60 16 48 H 0.05 0.69 6.63 -2.39 -0.02 0.67 16 49 H 0.07 0.77 6.98 -2.39 -0.02 0.75 16 50 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 51 H 0.05 0.84 8.06 -2.39 -0.02 0.82 16 52 H 0.05 0.85 7.46 -2.39 -0.02 0.84 16 53 H 0.03 1.43 7.13 -2.39 -0.02 1.41 16 54 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -72.51 395.68 3.94 -68.58 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: 0.85 Total: 11.81 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: 5.62 Total: 8.28 kcal Atomic # 7 Polarization: -105.79 SS G_CDS: -4.51 Total: -110.30 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: -0.05 Total: -25.43 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -72.51 3.94 -68.58 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971955032.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.757 kcal (2) G-P(sol) polarization free energy of solvation -72.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds