Wall clock time and date at job start Tue Mar 31 2020 13:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46503 * 109.46974 * 2 1 4 4 C 1.34770 * 119.99945 * 275.37510 * 3 2 1 5 5 O 1.21275 * 120.00098 * 184.70896 * 4 3 2 6 6 C 1.50709 * 119.99993 * 4.71268 * 4 3 2 7 7 H 1.08999 * 112.84976 * 34.32468 * 6 4 3 8 8 C 1.53777 * 113.61398 * 165.52606 * 6 4 3 9 9 C 1.54059 * 86.98638 * 89.15870 * 8 6 4 10 10 C 1.53784 * 87.07540 * 25.43040 * 9 8 6 11 11 C 1.52999 * 113.61285 * 220.02407 * 10 9 8 12 12 C 1.52995 * 113.68974 * 89.12974 * 10 9 8 13 13 C 1.46497 * 119.99803 * 95.37806 * 3 2 1 14 14 H 1.08997 * 108.44803 * 182.30623 * 13 3 2 15 15 C 1.52575 * 108.51240 * 64.76905 * 13 3 2 16 16 C 1.50878 * 109.35712 * 153.72567 * 15 13 3 17 17 C 1.53947 * 110.09431 * 91.88733 * 16 15 13 18 18 N 1.47602 * 112.14450 * 319.43753 * 17 16 15 19 19 C 1.36933 * 118.64776 * 137.86765 * 18 17 16 20 20 H 1.08004 * 119.99872 * 212.38778 * 19 18 17 21 21 C 1.38810 * 120.00004 * 32.38754 * 19 18 17 22 22 N 1.31618 * 120.00157 * 7.79790 * 21 19 18 23 23 Si 1.86807 * 119.99992 * 187.79908 * 21 19 18 24 24 H 1.48499 * 109.46883 * 359.97438 * 23 21 19 25 25 H 1.48490 * 109.46981 * 119.99996 * 23 21 19 26 26 H 1.48497 * 109.46838 * 240.00048 * 23 21 19 27 27 C 1.44670 * 122.54108 * 317.85867 * 18 17 16 28 28 C 1.47091 * 108.51712 * 299.99749 * 13 3 2 29 29 H 1.09007 * 109.46807 * 304.64932 * 1 2 3 30 30 H 1.08999 * 109.47106 * 64.64709 * 1 2 3 31 31 H 1.09000 * 109.47411 * 184.65539 * 1 2 3 32 32 H 1.08996 * 109.46843 * 239.99710 * 2 1 3 33 33 H 1.09002 * 109.46934 * 120.00010 * 2 1 3 34 34 H 1.08999 * 113.61840 * 203.66151 * 8 6 4 35 35 H 1.08998 * 113.61614 * 334.56823 * 8 6 4 36 36 H 1.08999 * 113.61103 * 270.88640 * 9 8 6 37 37 H 1.08996 * 113.61751 * 139.98050 * 9 8 6 38 38 H 1.08999 * 109.46885 * 162.50097 * 11 10 9 39 39 H 1.09003 * 109.46874 * 282.50041 * 11 10 9 40 40 H 1.08996 * 109.47285 * 42.49816 * 11 10 9 41 41 H 1.09000 * 109.47334 * 322.46221 * 12 10 9 42 42 H 1.08996 * 109.47395 * 82.46333 * 12 10 9 43 43 H 1.08993 * 109.47301 * 202.46395 * 12 10 9 44 44 H 1.09001 * 109.48864 * 273.69070 * 15 13 3 45 45 H 1.08997 * 109.48898 * 33.73237 * 15 13 3 46 46 H 1.08996 * 109.36883 * 212.07717 * 16 15 13 47 47 H 1.09005 * 109.36577 * 331.82357 * 16 15 13 48 48 H 1.09000 * 108.94938 * 80.12161 * 17 16 15 49 49 H 1.09000 * 108.95007 * 198.74852 * 17 16 15 50 50 H 0.96998 * 120.00383 * 180.02562 * 22 21 19 51 51 H 1.09008 * 109.61289 * 330.83890 * 27 18 17 52 52 H 1.09000 * 109.32487 * 210.89907 * 27 18 17 53 53 H 1.08998 * 109.32666 * 304.31784 * 28 13 3 54 54 H 1.09003 * 109.32659 * 63.96350 * 28 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1399 2.0530 -1.1620 5 8 2.6238 3.1650 -1.1719 6 6 1.6742 1.4224 -2.4492 7 1 0.7948 0.7921 -2.3178 8 6 1.5495 2.4191 -3.6136 9 6 3.0242 2.1069 -3.9319 10 6 2.8021 0.7476 -3.2477 11 6 3.9808 0.2971 -2.3826 12 6 2.3105 -0.3459 -4.1982 13 6 2.3746 2.0322 1.2631 14 1 2.6720 3.0589 1.0502 15 6 3.5701 1.2999 1.8652 16 6 4.3459 2.2483 2.7456 17 6 3.8401 2.1565 4.1966 18 7 2.3699 2.0458 4.2674 19 6 1.8201 1.1630 5.1581 20 1 0.8903 0.6666 4.9224 21 6 2.4578 0.9060 6.3640 22 7 3.5047 1.6198 6.7200 23 14 1.8302 -0.4530 7.4815 24 1 0.6492 -1.1014 6.8570 25 1 2.9008 -1.4621 7.6830 26 1 1.4413 0.1247 8.7930 27 6 1.4891 2.8336 3.4327 28 6 1.1839 2.0603 2.1262 29 1 -0.3633 0.5843 0.8455 30 1 -0.3633 0.4400 -0.9287 31 1 -0.3634 -1.0243 0.0834 32 1 1.8933 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 0.8573 2.0972 -4.3917 35 1 1.3788 3.4466 -3.2924 36 1 3.7299 2.7501 -3.4062 37 1 3.2338 2.0297 -4.9987 38 1 3.6517 -0.4861 -1.6996 39 1 4.7745 -0.0887 -3.0224 40 1 4.3559 1.1450 -1.8095 41 1 1.6145 0.0845 -4.9183 42 1 3.1605 -0.7766 -4.7272 43 1 1.8061 -1.1246 -3.6262 44 1 3.2184 0.4569 2.4599 45 1 4.2146 0.9365 1.0648 46 1 5.4037 1.9871 2.7144 47 1 4.2144 3.2678 2.3827 48 1 4.2841 1.2817 4.6716 49 1 4.1543 3.0488 4.7382 50 1 3.9506 1.4400 7.5625 51 1 1.9673 3.7825 3.1896 52 1 0.5588 3.0231 3.9682 53 1 0.3671 2.5524 1.5982 54 1 0.8917 1.0391 2.3712 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998093132.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:18 Heat of formation + Delta-G solvation = -16.248965 kcal Electronic energy + Delta-G solvation = -30297.058110 eV Core-core repulsion = 26655.218008 eV Total energy + Delta-G solvation = -3641.840102 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.18232 -40.18445 -38.46119 -37.05952 -34.84094 -33.33076 -32.47950 -31.63054 -30.91862 -28.50441 -28.07889 -27.29221 -25.79689 -24.88787 -24.30197 -23.40289 -21.76217 -21.06966 -20.36860 -18.83859 -18.58097 -18.22395 -17.07578 -16.89004 -16.55534 -15.89148 -15.78381 -15.53437 -15.30714 -15.18256 -14.80876 -14.60209 -14.56858 -14.28915 -14.05155 -13.88171 -13.74729 -13.40053 -13.19457 -13.11306 -13.04494 -12.97013 -12.78154 -12.73180 -12.41265 -12.35517 -12.12784 -12.06772 -11.94612 -11.83772 -11.74998 -11.66315 -11.54634 -11.39689 -11.34875 -11.02418 -10.95036 -10.57380 -10.45712 -9.60896 -8.55707 -7.82618 -5.37342 1.46932 1.48841 1.58667 1.64003 2.03699 2.52313 3.32875 3.46313 3.47499 3.63386 3.67951 3.80325 3.86131 4.03231 4.09092 4.15372 4.27443 4.33087 4.40661 4.42630 4.43996 4.51309 4.60604 4.65351 4.67758 4.72240 4.78476 4.82615 4.87035 4.90698 4.96558 4.98356 5.02170 5.05760 5.07035 5.12475 5.14972 5.16164 5.20298 5.24709 5.30875 5.33199 5.39379 5.43096 5.50015 5.56436 5.62399 5.70308 5.70959 5.80900 6.45992 6.54933 7.21841 7.27348 7.94189 8.38552 9.22310 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.022012 B = 0.003456 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.708318 B = 8099.901795 C = 8393.613679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.100 3.900 3 N -0.602 5.602 4 C 0.531 3.469 5 O -0.588 6.588 6 C -0.136 4.136 7 H 0.117 0.883 8 C -0.118 4.118 9 C -0.133 4.133 10 C -0.059 4.059 11 C -0.143 4.143 12 C -0.123 4.123 13 C 0.163 3.837 14 H 0.062 0.938 15 C -0.093 4.093 16 C -0.130 4.130 17 C 0.194 3.806 18 N -0.600 5.600 19 C -0.261 4.261 20 H 0.066 0.934 21 C -0.045 4.045 22 N -0.937 5.937 23 Si 0.965 3.035 24 H -0.264 1.264 25 H -0.291 1.291 26 H -0.295 1.295 27 C 0.157 3.843 28 C -0.130 4.130 29 H 0.049 0.951 30 H 0.065 0.935 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.075 0.925 34 H 0.115 0.885 35 H 0.052 0.948 36 H 0.056 0.944 37 H 0.085 0.915 38 H 0.064 0.936 39 H 0.071 0.929 40 H 0.027 0.973 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.071 0.929 44 H 0.060 0.940 45 H 0.059 0.941 46 H 0.067 0.933 47 H 0.046 0.954 48 H 0.042 0.958 49 H -0.009 1.009 50 H 0.248 0.752 51 H 0.030 0.970 52 H 0.043 0.957 53 H 0.061 0.939 54 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.483 -6.663 -23.270 24.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.022 4.022 3 N -0.333 5.333 4 C 0.321 3.679 5 O -0.469 6.469 6 C -0.157 4.157 7 H 0.135 0.865 8 C -0.155 4.155 9 C -0.170 4.170 10 C -0.060 4.060 11 C -0.200 4.200 12 C -0.180 4.180 13 C 0.060 3.940 14 H 0.080 0.920 15 C -0.132 4.132 16 C -0.170 4.170 17 C 0.069 3.931 18 N -0.323 5.323 19 C -0.391 4.391 20 H 0.084 0.916 21 C -0.241 4.241 22 N -0.583 5.583 23 Si 0.793 3.207 24 H -0.188 1.188 25 H -0.218 1.218 26 H -0.222 1.222 27 C 0.030 3.970 28 C -0.171 4.171 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.103 0.897 32 H 0.115 0.885 33 H 0.094 0.906 34 H 0.133 0.867 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.104 0.896 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.046 0.954 41 H 0.090 0.910 42 H 0.088 0.912 43 H 0.090 0.910 44 H 0.079 0.921 45 H 0.078 0.922 46 H 0.086 0.914 47 H 0.065 0.935 48 H 0.060 0.940 49 H 0.009 0.991 50 H 0.057 0.943 51 H 0.048 0.952 52 H 0.062 0.938 53 H 0.080 0.920 54 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.136 -6.087 -23.128 24.271 hybrid contribution 0.127 -0.052 1.552 1.558 sum -4.009 -6.139 -21.576 22.788 Atomic orbital electron populations 1.22342 0.94852 1.03448 1.02400 1.21736 0.95352 0.81297 1.03798 1.48325 1.64447 1.14856 1.05679 1.20610 0.76933 0.84818 0.85562 1.90635 1.46791 1.22246 1.87194 1.22741 1.01474 1.00229 0.91214 0.86473 1.22809 0.97885 0.98248 0.96573 1.23052 0.96730 0.96136 1.01079 1.21746 0.93402 0.95407 0.95395 1.21851 0.98064 1.00557 0.99533 1.21604 1.01848 0.96448 0.98072 1.19787 0.94758 0.96562 0.82905 0.91981 1.21096 0.95752 0.98669 0.97676 1.21850 0.99510 0.98763 0.96846 1.20703 0.83039 0.98107 0.91222 1.43788 1.00912 1.45112 1.42445 1.19481 1.07096 1.17137 0.95412 0.91602 1.25946 0.98868 1.01129 0.98114 1.70200 1.23619 1.41740 1.22730 0.85240 0.77946 0.78898 0.78576 1.18769 1.21827 1.22237 1.20732 0.93568 0.92234 0.90502 1.21632 0.96646 1.01915 0.96873 0.93207 0.91609 0.89689 0.88513 0.90649 0.86681 0.92916 0.92517 0.89620 0.91666 0.91010 0.95378 0.90970 0.91153 0.91025 0.92127 0.92217 0.91406 0.93527 0.93982 0.99137 0.94290 0.95152 0.93839 0.92009 0.91671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.14 9.83 71.98 0.71 -2.43 16 2 C 0.10 2.11 4.92 86.38 0.42 2.53 16 3 N -0.60 -16.63 2.22 -808.96 -1.79 -18.42 16 4 C 0.53 15.23 5.19 87.66 0.46 15.68 16 5 O -0.59 -22.01 14.64 -3.01 -0.04 -22.05 16 6 C -0.14 -2.67 2.57 -11.01 -0.03 -2.70 16 7 H 0.12 1.81 5.48 -2.39 -0.01 1.80 16 8 C -0.12 -2.19 7.09 31.21 0.22 -1.97 16 9 C -0.13 -2.54 6.82 31.22 0.21 -2.32 16 10 C -0.06 -0.97 1.25 -51.65 -0.06 -1.03 16 11 C -0.14 -2.75 8.26 71.98 0.59 -2.15 16 12 C -0.12 -1.23 9.07 71.98 0.65 -0.57 16 13 C 0.16 5.54 1.94 43.01 0.08 5.63 16 14 H 0.06 2.45 6.04 -2.39 -0.01 2.44 16 15 C -0.09 -3.32 4.38 29.76 0.13 -3.19 16 16 C -0.13 -5.16 5.70 30.22 0.17 -4.99 16 17 C 0.19 9.58 4.63 86.49 0.40 9.98 16 18 N -0.60 -29.71 2.26 -698.16 -1.58 -31.28 16 19 C -0.26 -13.94 9.41 84.03 0.79 -13.15 16 20 H 0.07 3.42 7.84 -2.91 -0.02 3.40 16 21 C -0.05 -2.48 5.03 84.86 0.43 -2.06 16 22 N -0.94 -55.28 10.96 21.65 0.24 -55.04 16 23 Si 0.96 44.23 29.56 68.60 2.03 46.25 16 24 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 25 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 26 H -0.30 -13.70 7.11 99.48 0.71 -13.00 16 27 C 0.16 6.68 5.65 87.35 0.49 7.17 16 28 C -0.13 -4.54 3.84 29.39 0.11 -4.43 16 29 H 0.05 1.12 5.94 -2.38 -0.01 1.11 16 30 H 0.07 1.04 6.34 -2.39 -0.02 1.03 16 31 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.10 1.58 5.21 -2.39 -0.01 1.57 16 33 H 0.08 1.77 7.21 -2.39 -0.02 1.75 16 34 H 0.11 1.42 7.66 -2.39 -0.02 1.41 16 35 H 0.05 1.26 7.67 -2.39 -0.02 1.24 16 36 H 0.06 1.46 7.46 -2.39 -0.02 1.44 16 37 H 0.09 1.27 8.10 -2.39 -0.02 1.25 16 38 H 0.06 1.16 6.50 -2.39 -0.02 1.14 16 39 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.03 0.72 7.09 -2.39 -0.02 0.70 16 41 H 0.07 0.58 7.35 -2.39 -0.02 0.56 16 42 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 43 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 44 H 0.06 2.36 7.20 -2.39 -0.02 2.35 16 45 H 0.06 1.95 8.05 -2.39 -0.02 1.93 16 46 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 47 H 0.05 1.85 7.31 -2.38 -0.02 1.83 16 48 H 0.04 2.30 6.54 -2.39 -0.02 2.28 16 49 H -0.01 -0.52 7.97 -2.39 -0.02 -0.54 16 50 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 51 H 0.03 1.29 8.05 -2.38 -0.02 1.27 16 52 H 0.04 1.86 7.99 -2.39 -0.02 1.84 16 53 H 0.06 2.01 7.92 -2.39 -0.02 1.99 16 54 H 0.06 2.32 6.75 -2.39 -0.02 2.31 16 Total: -1.00 -66.82 389.23 5.50 -61.32 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: 0.86 Total: 19.24 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: 5.79 Total: -0.01 kcal Atomic # 7 Polarization: -101.62 SS G_CDS: -3.13 Total: -104.75 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: -0.04 Total: -22.05 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.25 kcal Total: -66.82 5.50 -61.32 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998093132.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.068 kcal (2) G-P(sol) polarization free energy of solvation -66.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds