Wall clock time and date at job start Tue Mar 31 2020 13:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46501 * 109.47130 * 2 1 4 4 C 1.34777 * 120.00321 * 275.62024 * 3 2 1 5 5 O 1.21278 * 119.99844 * 5.32277 * 4 3 2 6 6 C 1.50698 * 119.99780 * 185.32657 * 4 3 2 7 7 H 1.08996 * 109.47504 * 44.95105 * 6 4 3 8 8 C 1.53007 * 109.46876 * 284.95302 * 6 4 3 9 9 C 1.53006 * 109.46737 * 180.02562 * 8 6 4 10 10 C 1.53000 * 109.47174 * 60.00357 * 9 8 6 11 11 C 1.53008 * 109.47102 * 299.99861 * 10 9 8 12 12 C 1.52988 * 109.47162 * 180.02562 * 11 10 9 13 13 C 1.52999 * 109.46696 * 300.00109 * 11 10 9 14 14 C 1.52999 * 109.47028 * 59.99742 * 11 10 9 15 15 C 1.46506 * 119.99749 * 95.61379 * 3 2 1 16 16 H 1.08995 * 110.63899 * 188.49342 * 15 3 2 17 17 C 1.55158 * 110.72160 * 311.83331 * 15 3 2 18 18 C 1.54903 * 101.58423 * 153.86196 * 17 15 3 19 19 N 1.47424 * 104.83350 * 322.99040 * 18 17 15 20 20 C 1.36938 * 125.65219 * 204.16645 * 19 18 17 21 21 H 1.07994 * 120.00332 * 179.97438 * 20 19 18 22 22 C 1.38813 * 119.99745 * 359.95457 * 20 19 18 23 23 N 1.31622 * 119.99936 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99872 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47121 * 89.99864 * 24 22 20 26 26 H 1.48500 * 109.46841 * 209.99619 * 24 22 20 27 27 H 1.48497 * 109.47196 * 329.99511 * 24 22 20 28 28 C 1.47026 * 108.70402 * 24.12632 * 19 18 17 29 29 H 1.08996 * 109.47118 * 305.74249 * 1 2 3 30 30 H 1.09004 * 109.47309 * 65.74145 * 1 2 3 31 31 H 1.09004 * 109.47099 * 185.74277 * 1 2 3 32 32 H 1.09004 * 109.46674 * 240.00792 * 2 1 3 33 33 H 1.08995 * 109.47111 * 120.00598 * 2 1 3 34 34 H 1.08996 * 109.46916 * 60.00497 * 8 6 4 35 35 H 1.08996 * 109.46892 * 300.00177 * 8 6 4 36 36 H 1.09001 * 109.47205 * 300.00094 * 9 8 6 37 37 H 1.08997 * 109.46655 * 180.02562 * 9 8 6 38 38 H 1.08997 * 109.47250 * 179.97438 * 10 9 8 39 39 H 1.08996 * 109.47457 * 59.99331 * 10 9 8 40 40 H 1.08999 * 109.47412 * 180.02562 * 12 11 10 41 41 H 1.09009 * 109.47043 * 299.99520 * 12 11 10 42 42 H 1.08997 * 109.47432 * 59.99614 * 12 11 10 43 43 H 1.09004 * 109.47338 * 299.99984 * 13 11 10 44 44 H 1.09005 * 109.47494 * 60.00284 * 13 11 10 45 45 H 1.08996 * 109.47043 * 179.97438 * 13 11 10 46 46 H 1.09001 * 109.46955 * 60.00323 * 14 11 10 47 47 H 1.08997 * 109.46690 * 180.02562 * 14 11 10 48 48 H 1.08998 * 111.00116 * 271.94069 * 17 15 3 49 49 H 1.09007 * 111.00535 * 35.78519 * 17 15 3 50 50 H 1.09000 * 110.37190 * 204.15157 * 18 17 15 51 51 H 1.09000 * 110.46007 * 81.87483 * 18 17 15 52 52 H 0.97005 * 119.99814 * 180.02562 * 23 22 20 53 53 H 1.09003 * 109.88459 * 239.52813 * 28 19 18 54 54 H 1.08996 * 109.88475 * 118.36036 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1352 2.0547 -1.1616 5 8 1.7462 1.5533 -2.1950 6 6 2.7493 3.4308 -1.1761 7 1 3.6514 3.4327 -0.5643 8 6 1.7487 4.4418 -0.6124 9 6 2.3720 5.8391 -0.6277 10 6 2.7293 6.2224 -2.0652 11 6 3.7299 5.2113 -2.6290 12 6 4.0876 5.5950 -4.0661 13 6 4.9963 5.2143 -1.7705 14 6 3.1066 3.8141 -2.6136 15 6 2.3795 2.0304 1.2627 16 1 2.5776 3.0908 1.1066 17 6 1.2655 1.8263 2.3233 18 6 2.0688 1.9359 3.6432 19 7 3.3600 1.2858 3.3543 20 6 4.1977 0.7271 4.2824 21 1 5.1255 0.2725 3.9681 22 6 3.8543 0.7453 5.6273 23 7 2.7239 1.3001 6.0104 24 14 4.9973 -0.0162 6.8934 25 1 5.9531 1.0114 7.3789 26 1 4.1990 -0.5288 8.0359 27 1 5.7482 -1.1365 6.2720 28 6 3.5991 1.3358 1.9044 29 1 -0.3633 0.6003 0.8341 30 1 -0.3634 0.4222 -0.9369 31 1 -0.3633 -1.0225 0.1028 32 1 1.8932 -0.5137 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 1.4939 4.1685 0.4115 35 1 0.8467 4.4400 -1.2242 36 1 3.2743 5.8411 -0.0162 37 1 1.6594 6.5592 -0.2257 38 1 3.1729 7.2179 -2.0762 39 1 1.8271 6.2202 -2.6768 40 1 4.8000 4.8745 -4.4679 41 1 3.1854 5.5931 -4.6780 42 1 4.5317 6.5903 -4.0767 43 1 5.4404 6.2097 -1.7814 44 1 4.7418 4.9412 -0.7464 45 1 5.7089 4.4938 -2.1718 46 1 2.2043 3.8120 -3.2251 47 1 3.8196 3.0939 -3.0148 48 1 0.5140 2.6130 2.2568 49 1 0.8080 0.8418 2.2249 50 1 1.5516 1.4116 4.4468 51 1 2.2219 2.9815 3.9104 52 1 2.4841 1.3132 6.9502 53 1 3.6996 0.3245 1.5102 54 1 4.5032 1.9082 1.6973 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034050582.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:51 Heat of formation + Delta-G solvation = -45.144290 kcal Electronic energy + Delta-G solvation = -29958.963462 eV Core-core repulsion = 26315.870365 eV Total energy + Delta-G solvation = -3643.093097 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.85550 -39.92518 -38.91584 -36.39798 -34.50810 -33.97746 -32.42652 -31.34123 -30.94695 -28.69147 -28.16474 -27.31783 -26.44716 -25.39430 -23.37528 -22.62987 -22.05886 -21.88018 -19.73936 -19.37886 -18.91002 -18.26383 -17.13747 -16.74335 -16.37060 -16.19020 -15.71545 -15.57453 -15.46582 -15.18236 -14.88572 -14.66863 -14.25692 -14.15099 -13.93386 -13.78269 -13.57267 -13.44704 -13.31260 -13.08362 -12.96348 -12.91080 -12.76376 -12.66886 -12.44498 -12.41681 -12.25732 -12.14494 -12.01303 -11.93811 -11.88218 -11.83868 -11.66050 -11.38529 -11.35218 -11.04511 -10.90785 -10.72832 -10.50785 -9.68461 -8.87840 -7.76081 -5.20446 1.49052 1.49588 1.58170 1.58848 1.94939 2.51303 3.32495 3.36292 3.66661 3.73075 3.75859 3.81824 3.93233 4.00384 4.11623 4.12570 4.18406 4.27573 4.34137 4.37261 4.44362 4.48495 4.50686 4.59456 4.60924 4.65785 4.74028 4.83694 4.86154 4.88379 4.92424 4.97198 5.00150 5.02479 5.07051 5.08603 5.11486 5.18868 5.21232 5.23721 5.28657 5.31088 5.39061 5.47044 5.47761 5.52119 5.57476 5.65211 5.67085 5.82324 6.31932 6.43533 7.12276 7.15411 7.78550 8.40909 9.25044 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.014808 B = 0.003669 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.401549 B = 7630.405313 C = 8539.016616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.110 3.890 3 N -0.595 5.595 4 C 0.518 3.482 5 O -0.575 6.575 6 C -0.104 4.104 7 H 0.098 0.902 8 C -0.110 4.110 9 C -0.117 4.117 10 C -0.105 4.105 11 C -0.062 4.062 12 C -0.138 4.138 13 C -0.147 4.147 14 C -0.080 4.080 15 C 0.135 3.865 16 H 0.119 0.881 17 C -0.139 4.139 18 C 0.157 3.843 19 N -0.621 5.621 20 C -0.238 4.238 21 H 0.077 0.923 22 C -0.060 4.060 23 N -0.945 5.945 24 Si 0.976 3.024 25 H -0.287 1.287 26 H -0.294 1.294 27 H -0.273 1.273 28 C 0.125 3.875 29 H 0.062 0.938 30 H 0.048 0.952 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.062 0.938 40 H 0.051 0.949 41 H 0.054 0.946 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.056 0.944 45 H 0.050 0.950 46 H 0.060 0.940 47 H 0.052 0.948 48 H 0.087 0.913 49 H 0.073 0.927 50 H 0.075 0.925 51 H -0.003 1.003 52 H 0.247 0.753 53 H 0.024 0.976 54 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.608 9.162 -16.404 18.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.012 4.012 3 N -0.325 5.325 4 C 0.308 3.692 5 O -0.455 6.455 6 C -0.125 4.125 7 H 0.116 0.884 8 C -0.148 4.148 9 C -0.155 4.155 10 C -0.143 4.143 11 C -0.062 4.062 12 C -0.195 4.195 13 C -0.204 4.204 14 C -0.118 4.118 15 C 0.031 3.969 16 H 0.137 0.863 17 C -0.178 4.178 18 C 0.032 3.968 19 N -0.347 5.347 20 C -0.367 4.367 21 H 0.095 0.905 22 C -0.253 4.253 23 N -0.594 5.594 24 Si 0.804 3.196 25 H -0.214 1.214 26 H -0.220 1.220 27 H -0.198 1.198 28 C -0.002 4.002 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.096 0.904 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.075 0.925 45 H 0.069 0.931 46 H 0.079 0.921 47 H 0.071 0.929 48 H 0.105 0.895 49 H 0.092 0.908 50 H 0.093 0.907 51 H 0.015 0.985 52 H 0.057 0.943 53 H 0.042 0.958 54 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -1.790 8.835 -16.748 19.020 hybrid contribution 0.620 -0.771 1.051 1.443 sum -1.170 8.064 -15.697 17.686 Atomic orbital electron populations 1.22133 0.94783 1.02961 1.01846 1.21372 0.95415 0.82290 1.02165 1.48048 1.64141 1.14104 1.06249 1.21161 0.77661 0.88175 0.82245 1.90624 1.51001 1.70819 1.33093 1.21422 1.00115 0.90613 1.00347 0.88393 1.21617 0.97439 0.94796 1.00927 1.21573 1.01248 0.95028 0.97616 1.21598 0.98602 0.98494 0.95569 1.20538 0.95531 0.93860 0.96281 1.21823 1.01390 1.01681 0.94637 1.22004 0.96561 1.02193 0.99691 1.21339 1.00475 0.96496 0.93481 1.22293 0.94561 0.97601 0.82475 0.86305 1.23313 0.97121 1.02543 0.94776 1.21706 0.85547 0.94545 0.95007 1.44656 1.21277 1.67454 1.01327 1.19380 1.00241 1.29628 0.87489 0.90473 1.25530 0.99241 1.01902 0.98626 1.70014 1.24036 1.50520 1.14844 0.85121 0.77772 0.78064 0.78613 1.21389 1.21997 1.19755 1.21708 0.96142 0.97680 0.84639 0.91945 0.93239 0.90433 0.91182 0.90711 0.91234 0.91704 0.91257 0.90475 0.90573 0.91892 0.92949 0.92652 0.91472 0.91554 0.92548 0.93106 0.92143 0.92922 0.89498 0.90823 0.90678 0.98510 0.94270 0.95785 0.95468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.15 9.86 71.98 0.71 -3.44 16 2 C 0.11 3.23 4.92 86.38 0.43 3.66 16 3 N -0.59 -17.77 2.48 -791.24 -1.97 -19.73 16 4 C 0.52 15.48 6.86 87.66 0.60 16.08 16 5 O -0.58 -20.35 15.66 -3.02 -0.05 -20.40 16 6 C -0.10 -2.47 1.39 -11.54 -0.02 -2.49 16 7 H 0.10 2.33 5.67 -2.39 -0.01 2.31 16 8 C -0.11 -2.28 4.81 30.60 0.15 -2.13 16 9 C -0.12 -1.97 5.65 30.60 0.17 -1.80 16 10 C -0.11 -1.61 4.73 30.60 0.14 -1.47 16 11 C -0.06 -1.06 0.77 -52.18 -0.04 -1.10 16 12 C -0.14 -2.06 8.47 71.98 0.61 -1.45 16 13 C -0.15 -2.51 7.78 71.98 0.56 -1.95 16 14 C -0.08 -1.77 3.42 30.59 0.10 -1.67 16 15 C 0.13 4.26 2.54 46.18 0.12 4.38 16 16 H 0.12 3.38 4.25 -2.39 -0.01 3.37 16 17 C -0.14 -4.74 5.90 31.98 0.19 -4.55 16 18 C 0.16 7.23 5.89 86.85 0.51 7.74 16 19 N -0.62 -30.41 3.39 -691.99 -2.35 -32.76 16 20 C -0.24 -12.95 10.27 84.03 0.86 -12.08 16 21 H 0.08 4.07 7.83 -2.91 -0.02 4.04 16 22 C -0.06 -3.29 5.49 84.86 0.47 -2.83 16 23 N -0.94 -54.13 10.09 21.65 0.22 -53.91 16 24 Si 0.98 44.52 29.55 68.60 2.03 46.55 16 25 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16 26 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 27 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 28 C 0.12 4.91 6.77 86.73 0.59 5.50 16 29 H 0.06 1.64 6.02 -2.39 -0.01 1.62 16 30 H 0.05 1.36 8.08 -2.39 -0.02 1.35 16 31 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.07 2.10 7.68 -2.38 -0.02 2.08 16 33 H 0.07 2.34 6.69 -2.39 -0.02 2.33 16 34 H 0.07 1.52 5.86 -2.39 -0.01 1.50 16 35 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.07 1.19 6.43 -2.39 -0.02 1.18 16 37 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.05 0.80 8.14 -2.39 -0.02 0.79 16 41 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 42 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 44 H 0.06 1.04 4.81 -2.38 -0.01 1.03 16 45 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.06 1.47 7.94 -2.39 -0.02 1.45 16 47 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 48 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 49 H 0.07 2.53 5.22 -2.38 -0.01 2.52 16 50 H 0.08 4.00 5.87 -2.39 -0.01 3.99 16 51 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 52 H 0.25 13.83 8.31 -92.70 -0.77 13.06 16 53 H 0.02 0.98 6.88 -2.39 -0.02 0.96 16 54 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -63.10 389.55 4.90 -58.21 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: 0.86 Total: 21.66 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: 6.15 Total: 0.40 kcal Atomic # 7 Polarization: -102.32 SS G_CDS: -4.10 Total: -106.41 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: -0.05 Total: -20.40 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -63.10 4.90 -58.21 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034050582.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.062 kcal (2) G-P(sol) polarization free energy of solvation -63.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds