Wall clock time and date at job start Tue Mar 31 2020 13:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36932 * 119.99819 * 2 1 4 4 H 1.08005 * 120.00261 * 174.47319 * 3 2 1 5 5 C 1.38814 * 120.00111 * 354.46879 * 3 2 1 6 6 N 1.31615 * 120.00067 * 5.07762 * 5 3 2 7 7 Si 1.86806 * 120.00077 * 185.08294 * 5 3 2 8 8 H 1.48502 * 109.47268 * 89.99921 * 7 5 3 9 9 H 1.48497 * 109.46952 * 209.99995 * 7 5 3 10 10 H 1.48496 * 109.46791 * 329.99894 * 7 5 3 11 11 C 1.46496 * 119.99895 * 179.97438 * 2 1 3 12 12 C 1.53000 * 109.47215 * 275.27998 * 11 2 1 13 13 H 1.08998 * 109.58936 * 61.56289 * 12 11 2 14 14 C 1.53197 * 109.58819 * 301.13201 * 12 11 2 15 15 C 1.53043 * 109.31389 * 185.57422 * 14 12 11 16 16 C 1.53348 * 109.60141 * 61.37947 * 15 14 12 17 17 C 1.53191 * 109.14896 * 298.70483 * 16 15 14 18 18 N 1.46925 * 108.89340 * 54.58662 * 17 16 15 19 19 C 1.34778 * 120.63648 * 126.29125 * 18 17 16 20 20 O 1.21274 * 120.00238 * 174.38590 * 19 18 17 21 21 C 1.50699 * 119.99760 * 354.38815 * 19 18 17 22 22 C 1.52996 * 109.47236 * 179.97438 * 21 19 18 23 23 C 1.52996 * 109.47267 * 179.97438 * 22 21 19 24 24 C 1.54265 * 110.03536 * 292.16851 * 23 22 21 25 25 C 1.54884 * 104.20217 * 217.10770 * 24 23 22 26 26 C 1.54891 * 102.74624 * 37.93762 * 25 24 23 27 27 C 1.53877 * 110.03419 * 175.00351 * 23 22 21 28 28 H 1.09006 * 109.47155 * 184.73067 * 1 2 3 29 29 H 1.08992 * 109.47602 * 304.73500 * 1 2 3 30 30 H 1.08998 * 109.47081 * 64.73426 * 1 2 3 31 31 H 0.96998 * 120.00432 * 179.97438 * 6 5 3 32 32 H 1.09001 * 109.47046 * 155.28593 * 11 2 1 33 33 H 1.09000 * 109.47532 * 35.28272 * 11 2 1 34 34 H 1.08996 * 109.50093 * 305.53425 * 14 12 11 35 35 H 1.09008 * 109.49183 * 65.62671 * 14 12 11 36 36 H 1.08997 * 109.45663 * 181.38555 * 15 14 12 37 37 H 1.08997 * 109.45751 * 301.36289 * 15 14 12 38 38 H 1.09005 * 109.67853 * 178.74547 * 16 15 14 39 39 H 1.08996 * 109.48001 * 58.55191 * 16 15 14 40 40 H 1.09000 * 109.59145 * 294.72604 * 17 16 15 41 41 H 1.09009 * 109.58604 * 174.43622 * 17 16 15 42 42 H 1.08999 * 109.47279 * 299.99803 * 21 19 18 43 43 H 1.09004 * 109.47259 * 59.99593 * 21 19 18 44 44 H 1.08999 * 109.47275 * 300.00356 * 22 21 19 45 45 H 1.09004 * 109.46879 * 59.99912 * 22 21 19 46 46 H 1.08997 * 110.01765 * 53.60846 * 23 22 21 47 47 H 1.09007 * 110.48567 * 335.78574 * 24 23 22 48 48 H 1.09000 * 110.48616 * 98.42338 * 24 23 22 49 49 H 1.09001 * 110.75683 * 279.63177 * 25 24 23 50 50 H 1.08995 * 110.76096 * 156.25765 * 25 24 23 51 51 H 1.09000 * 110.48612 * 203.37964 * 26 25 24 52 52 H 1.09007 * 110.48341 * 80.74363 * 26 25 24 53 53 H 1.09003 * 110.03155 * 238.57248 * 27 23 22 54 54 H 1.09002 * 110.02870 * 359.95119 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.2259 1.1881 0.0901 5 6 1.4604 2.3852 -0.1159 6 7 0.1443 2.3897 -0.1251 7 14 2.4009 3.9930 -0.2588 8 1 2.6593 4.2896 -1.6908 9 1 1.5978 5.0908 0.3370 10 1 3.6930 3.8764 0.4636 11 6 2.1975 -1.2687 0.0006 12 6 2.3375 -1.7761 1.4372 13 1 1.3488 -1.9551 1.8595 14 6 3.0784 -0.7334 2.2803 15 6 3.3378 -1.3032 3.6768 16 6 4.2214 -2.5517 3.5670 17 6 3.4916 -3.6124 2.7370 18 7 3.1100 -3.0260 1.4450 19 6 3.4622 -3.6228 0.2890 20 8 3.0560 -3.1864 -0.7670 21 6 4.3607 -4.8324 0.3088 22 6 4.6030 -5.3113 -1.1239 23 6 5.5158 -6.5389 -1.1038 24 6 6.9302 -6.1384 -0.6361 25 6 7.8765 -7.0130 -1.4953 26 6 7.1687 -7.0306 -2.8730 27 6 5.6675 -7.1063 -2.5261 28 1 -0.3634 -1.0242 0.0848 29 1 -0.3634 0.5855 0.8444 30 1 -0.3633 0.4386 -0.9293 31 1 -0.3374 3.2278 -0.2057 32 1 3.1876 -1.1168 -0.4292 33 1 1.6527 -2.0031 -0.5927 34 1 4.0282 -0.4892 1.8047 35 1 2.4697 0.1673 2.3621 36 1 3.8430 -0.5541 4.2864 37 1 2.3889 -1.5703 4.1419 38 1 4.4253 -2.9457 4.5627 39 1 5.1605 -2.2906 3.0793 40 1 2.5978 -3.9405 3.2676 41 1 4.1514 -4.4641 2.5709 42 1 5.3127 -4.5704 0.7706 43 1 3.8857 -5.6285 0.8822 44 1 3.6510 -5.5734 -1.5853 45 1 5.0779 -4.5152 -1.6976 46 1 5.1038 -7.2994 -0.4405 47 1 7.1099 -5.0804 -0.8275 48 1 7.0597 -6.3628 0.4227 49 1 7.9495 -8.0205 -1.0858 50 1 8.8622 -6.5543 -1.5732 51 1 7.4724 -7.9062 -3.4467 52 1 7.3871 -6.1168 -3.4257 53 1 5.3299 -8.1424 -2.5528 54 1 5.0902 -6.5075 -3.2305 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691776278.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:43 Heat of formation + Delta-G solvation = -38.289336 kcal Electronic energy + Delta-G solvation = -29038.199876 eV Core-core repulsion = 25395.404032 eV Total energy + Delta-G solvation = -3642.795844 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 322.236 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.52621 -39.37885 -38.35674 -37.34303 -34.50349 -33.69786 -33.41393 -31.66389 -29.60921 -29.05309 -28.06389 -27.68194 -25.67811 -24.54335 -23.63713 -22.03760 -21.71495 -21.37372 -20.39686 -19.74784 -18.79365 -17.72583 -17.17799 -16.88674 -16.51460 -16.26107 -15.83788 -15.54841 -15.35315 -15.16965 -14.92469 -14.76823 -14.51875 -14.41716 -14.14139 -13.89037 -13.82288 -13.44032 -13.17734 -13.04129 -12.92174 -12.73561 -12.60294 -12.25180 -12.15280 -12.09646 -11.96973 -11.92731 -11.87266 -11.80784 -11.72098 -11.60381 -11.51356 -11.42051 -11.40386 -11.30626 -11.16247 -10.65808 -10.11236 -9.44635 -8.88035 -7.72137 -5.16072 1.42767 1.45575 1.53353 1.76169 2.09728 2.52232 3.34118 3.58243 3.73031 3.78882 3.83121 3.91691 3.95202 4.00755 4.09972 4.18797 4.23044 4.27527 4.39668 4.48817 4.61498 4.64215 4.65834 4.70598 4.72703 4.75002 4.79956 4.81748 4.86979 4.88196 4.95996 5.04043 5.05914 5.07849 5.12948 5.16869 5.18738 5.25448 5.29402 5.32386 5.35115 5.37596 5.46412 5.52461 5.53206 5.53786 5.58720 5.64802 5.79211 5.82837 6.31143 6.62562 7.18947 7.35902 7.92755 8.32723 9.26106 Molecular weight = 322.24amu Principal moments of inertia in cm(-1) A = 0.014350 B = 0.003124 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.750419 B = 8961.439412 C = 9727.097564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.191 3.809 2 N -0.628 5.628 3 C -0.237 4.237 4 H 0.070 0.930 5 C -0.065 4.065 6 N -0.948 5.948 7 Si 0.969 3.031 8 H -0.291 1.291 9 H -0.292 1.292 10 H -0.269 1.269 11 C 0.177 3.823 12 C 0.135 3.865 13 H 0.051 0.949 14 C -0.108 4.108 15 C -0.117 4.117 16 C -0.126 4.126 17 C 0.101 3.899 18 N -0.608 5.608 19 C 0.496 3.504 20 O -0.579 6.579 21 C -0.125 4.125 22 C -0.092 4.092 23 C -0.085 4.085 24 C -0.122 4.122 25 C -0.123 4.123 26 C -0.128 4.128 27 C -0.126 4.126 28 H 0.010 0.990 29 H 0.027 0.973 30 H 0.004 0.996 31 H 0.243 0.757 32 H 0.028 0.972 33 H 0.051 0.949 34 H 0.039 0.961 35 H 0.052 0.948 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.106 0.894 39 H 0.061 0.939 40 H 0.078 0.922 41 H 0.118 0.882 42 H 0.113 0.887 43 H 0.120 0.880 44 H 0.050 0.950 45 H 0.043 0.957 46 H 0.088 0.912 47 H 0.054 0.946 48 H 0.082 0.918 49 H 0.076 0.924 50 H 0.066 0.934 51 H 0.070 0.930 52 H 0.053 0.947 53 H 0.071 0.929 54 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.558 -23.152 7.325 28.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 N -0.353 5.353 3 C -0.367 4.367 4 H 0.088 0.912 5 C -0.258 4.258 6 N -0.599 5.599 7 Si 0.798 3.202 8 H -0.218 1.218 9 H -0.218 1.218 10 H -0.194 1.194 11 C 0.051 3.949 12 C 0.029 3.971 13 H 0.069 0.931 14 C -0.147 4.147 15 C -0.155 4.155 16 C -0.164 4.164 17 C -0.020 4.020 18 N -0.342 5.342 19 C 0.286 3.714 20 O -0.459 6.459 21 C -0.165 4.165 22 C -0.130 4.130 23 C -0.104 4.104 24 C -0.160 4.160 25 C -0.161 4.161 26 C -0.166 4.166 27 C -0.164 4.164 28 H 0.028 0.972 29 H 0.045 0.955 30 H 0.023 0.977 31 H 0.053 0.947 32 H 0.046 0.954 33 H 0.069 0.931 34 H 0.058 0.942 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.124 0.876 39 H 0.080 0.920 40 H 0.096 0.904 41 H 0.136 0.864 42 H 0.131 0.869 43 H 0.138 0.862 44 H 0.069 0.931 45 H 0.062 0.938 46 H 0.107 0.893 47 H 0.073 0.927 48 H 0.101 0.899 49 H 0.095 0.905 50 H 0.085 0.915 51 H 0.089 0.911 52 H 0.072 0.928 53 H 0.090 0.910 54 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 14.247 -22.807 6.764 27.728 hybrid contribution -0.230 1.716 -0.560 1.819 sum 14.017 -21.091 6.204 26.073 Atomic orbital electron populations 1.20635 0.82363 0.93235 0.99164 1.44552 1.02455 1.01945 1.86325 1.19524 0.91045 0.84776 1.41317 0.91235 1.25625 0.96603 1.00845 1.02702 1.70413 1.06135 1.24783 1.58544 0.85220 0.77869 0.79738 0.77417 1.21829 1.21844 1.19433 1.21235 0.95103 0.85497 0.93022 1.21854 0.93142 0.83531 0.98621 0.93104 1.21662 0.99057 0.97815 0.96118 1.21593 1.00474 0.98300 0.95092 1.21955 0.98115 0.94806 1.01534 1.22073 1.00741 0.96807 0.82398 1.48473 1.54358 1.24118 1.07258 1.21640 0.81074 0.85812 0.82867 1.90754 1.56292 1.66058 1.32758 1.21762 0.99821 0.94770 1.00099 1.21399 0.99390 0.97260 0.94946 1.21781 0.95375 0.96220 0.96981 1.22504 0.93727 0.99352 1.00391 1.22501 0.98262 1.00418 0.94912 1.22382 0.94979 1.01443 0.97791 1.22245 0.96715 1.01053 0.96346 0.97178 0.95476 0.97707 0.94692 0.95357 0.93079 0.94196 0.92947 0.91471 0.91813 0.87605 0.91995 0.90395 0.86418 0.86933 0.86228 0.93127 0.93786 0.89326 0.92685 0.89949 0.90518 0.91545 0.91105 0.92814 0.90981 0.93168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 10.59 8.99 127.77 1.15 11.74 16 2 N -0.63 -34.75 2.60 -726.94 -1.89 -36.64 16 3 C -0.24 -13.83 8.22 84.03 0.69 -13.14 16 4 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 5 C -0.07 -3.87 5.46 84.86 0.46 -3.40 16 6 N -0.95 -58.75 9.44 21.65 0.20 -58.55 16 7 Si 0.97 47.64 29.56 68.60 2.03 49.66 16 8 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 9 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 10 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 11 C 0.18 8.52 3.55 86.38 0.31 8.82 16 12 C 0.13 5.12 3.21 44.98 0.14 5.26 16 13 H 0.05 2.02 8.14 -2.39 -0.02 2.01 16 14 C -0.11 -3.97 4.62 30.67 0.14 -3.83 16 15 C -0.12 -2.98 5.89 30.73 0.18 -2.80 16 16 C -0.13 -2.22 6.11 30.78 0.19 -2.03 16 17 C 0.10 1.77 6.34 86.36 0.55 2.32 16 18 N -0.61 -17.47 2.97 -795.00 -2.36 -19.83 16 19 C 0.50 14.98 7.53 87.66 0.66 15.64 16 20 O -0.58 -23.69 11.54 -3.01 -0.03 -23.73 16 21 C -0.13 -2.30 3.91 29.85 0.12 -2.18 16 22 C -0.09 -1.92 3.63 30.59 0.11 -1.81 16 23 C -0.09 -1.25 2.93 -10.07 -0.03 -1.28 16 24 C -0.12 -1.59 5.53 31.67 0.18 -1.42 16 25 C -0.12 -1.50 6.91 31.88 0.22 -1.28 16 26 C -0.13 -1.84 6.83 31.67 0.22 -1.63 16 27 C -0.13 -1.97 6.46 31.32 0.20 -1.77 16 28 H 0.01 0.49 7.90 -2.38 -0.02 0.47 16 29 H 0.03 1.59 6.92 -2.39 -0.02 1.57 16 30 H 0.00 0.27 7.16 -2.39 -0.02 0.25 16 31 H 0.24 14.64 8.31 -92.71 -0.77 13.87 16 32 H 0.03 1.46 7.09 -2.39 -0.02 1.45 16 33 H 0.05 2.61 6.17 -2.39 -0.01 2.60 16 34 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.05 2.36 6.97 -2.38 -0.02 2.34 16 36 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.11 1.18 8.14 -2.38 -0.02 1.17 16 39 H 0.06 1.16 8.14 -2.39 -0.02 1.15 16 40 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.12 1.21 5.93 -2.38 -0.01 1.19 16 42 H 0.11 1.60 7.29 -2.39 -0.02 1.58 16 43 H 0.12 1.46 7.71 -2.38 -0.02 1.44 16 44 H 0.05 1.24 8.10 -2.39 -0.02 1.22 16 45 H 0.04 1.15 7.96 -2.38 -0.02 1.13 16 46 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 47 H 0.05 0.88 7.76 -2.38 -0.02 0.86 16 48 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 49 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 50 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 51 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 52 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 53 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 54 H 0.05 0.95 7.67 -2.39 -0.02 0.93 16 Total: -1.00 -74.08 398.29 4.26 -69.82 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: 0.83 Total: 12.05 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: 5.48 Total: 7.21 kcal Atomic # 7 Polarization: -110.97 SS G_CDS: -4.05 Total: -115.02 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: -0.03 Total: -23.73 kcal Atomic # 14 Polarization: 47.64 SS G_CDS: 2.03 Total: 49.66 kcal Total: -74.08 4.26 -69.82 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691776278.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.535 kcal (2) G-P(sol) polarization free energy of solvation -74.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds