Wall clock time and date at job start Tue Mar 31 2020 13:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46507 * 119.99942 * 2 1 4 4 C 1.50696 * 109.46667 * 287.52615 * 3 2 1 5 5 H 1.08001 * 120.00320 * 359.97438 * 4 3 2 6 6 C 1.37879 * 119.99553 * 180.02562 * 4 3 2 7 7 N 1.31511 * 120.00196 * 359.97438 * 6 4 3 8 8 Si 1.86809 * 119.99774 * 179.97438 * 6 4 3 9 9 H 1.48496 * 109.47060 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47048 * 119.99559 * 8 6 4 11 11 H 1.48498 * 109.46954 * 239.99461 * 8 6 4 12 12 S 1.65606 * 120.00193 * 179.97438 * 2 1 3 13 13 O 1.42100 * 106.39913 * 30.34229 * 12 2 1 14 14 O 1.42101 * 106.40065 * 163.26395 * 12 2 1 15 15 C 1.76194 * 107.21875 * 276.80354 * 12 2 1 16 16 C 1.38223 * 119.99902 * 113.96401 * 15 12 2 17 17 C 1.38334 * 119.99858 * 179.72004 * 16 15 12 18 18 Cl 1.73598 * 120.00029 * 180.30087 * 17 16 15 19 19 C 1.38376 * 120.00155 * 0.57721 * 17 16 15 20 20 C 1.38179 * 119.99875 * 359.70035 * 19 17 16 21 21 C 1.38332 * 120.00384 * 294.24094 * 15 12 2 22 22 Cl 1.73601 * 119.99908 * 0.02562 * 21 15 12 23 23 H 1.08993 * 109.47319 * 269.99878 * 1 2 3 24 24 H 1.09002 * 109.46830 * 30.00745 * 1 2 3 25 25 H 1.09004 * 109.46623 * 149.99919 * 1 2 3 26 26 H 1.08994 * 109.46950 * 47.52151 * 3 2 1 27 27 H 1.09001 * 109.47031 * 167.52232 * 3 2 1 28 28 H 0.97001 * 120.00166 * 180.02562 * 7 6 4 29 29 H 1.08004 * 119.99893 * 0.02562 * 16 15 12 30 30 H 1.08001 * 120.00302 * 179.67994 * 19 17 16 31 31 H 1.07994 * 120.00016 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.0781 1.9176 -1.3549 5 1 1.5134 1.4332 -2.1378 6 6 2.6906 3.1293 -1.5953 7 7 3.3786 3.7189 -0.6421 8 14 2.5431 3.9334 -3.2750 9 1 1.7227 3.0734 -4.1651 10 1 1.8938 5.2612 -3.1329 11 1 3.8963 4.1044 -3.8624 12 16 2.2931 -1.4342 0.0006 13 8 1.4748 -2.3702 -0.6876 14 8 3.6242 -1.1290 -0.3920 15 6 2.3812 -1.9848 1.6720 16 6 1.7221 -3.1377 2.0555 17 6 1.7961 -3.5731 3.3664 18 17 0.9748 -5.0253 3.8463 19 6 2.5200 -2.8481 4.2965 20 6 3.1742 -1.6925 3.9145 21 6 3.1053 -1.2603 2.6017 22 17 3.9266 0.1919 2.1219 23 1 -0.3633 0.0000 1.0276 24 1 -0.3633 0.8899 -0.5140 25 1 -0.3633 -0.8900 -0.5139 26 1 1.7782 1.9304 0.7579 27 1 3.2481 1.0817 0.2220 28 1 3.8092 4.5715 -0.8111 29 1 1.1535 -3.7012 1.3305 30 1 2.5735 -3.1853 5.3212 31 1 3.7388 -1.1265 4.6404 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005860695.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:44 Heat of formation + Delta-G solvation = -49.836304 kcal Electronic energy + Delta-G solvation = -21051.593371 eV Core-core repulsion = 17512.441864 eV Total energy + Delta-G solvation = -3539.151507 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 322.994 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.56784 -37.09011 -36.73598 -36.27400 -35.56883 -35.29744 -32.46335 -31.70601 -30.72291 -27.75918 -25.25756 -23.72654 -23.05836 -22.25433 -18.98918 -17.87641 -17.03527 -16.67329 -16.24830 -16.15907 -15.34234 -15.20303 -14.51254 -14.29138 -14.12363 -13.54712 -13.31186 -12.78764 -12.57736 -12.45815 -12.25337 -12.15727 -11.90575 -11.57619 -11.49448 -11.25159 -11.21013 -11.04451 -10.98259 -10.72952 -10.58710 -10.30931 -10.05139 -9.72557 -9.56527 -8.86408 -8.45103 -8.09506 -6.09225 -4.13108 0.34891 0.72662 0.84672 1.71083 2.02606 2.93692 3.29205 3.37229 3.41481 3.55735 4.11619 4.32547 4.42009 4.54853 4.69919 4.96789 5.12765 5.26291 5.34632 5.48551 5.61331 5.66149 5.68053 5.99559 6.17070 6.26288 6.58243 7.23557 7.38076 7.55692 7.87975 8.18617 8.90025 9.51579 10.99368 Molecular weight = 322.99amu Principal moments of inertia in cm(-1) A = 0.024216 B = 0.004477 C = 0.004068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.969982 B = 6253.165616 C = 6881.434151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.977 5.977 3 C 0.243 3.757 4 C -0.531 4.531 5 H 0.064 0.936 6 C 0.063 3.937 7 N -0.893 5.893 8 Si 0.897 3.103 9 H -0.271 1.271 10 H -0.283 1.283 11 H -0.282 1.282 12 S 2.678 3.322 13 O -0.968 6.968 14 O -0.929 6.929 15 C -0.661 4.661 16 C -0.005 4.005 17 C -0.060 4.060 18 Cl -0.060 7.060 19 C -0.053 4.053 20 C -0.121 4.121 21 C 0.050 3.950 22 Cl 0.000 7.000 23 H 0.040 0.960 24 H 0.087 0.913 25 H 0.067 0.933 26 H 0.032 0.968 27 H 0.062 0.938 28 H 0.263 0.737 29 H 0.159 0.841 30 H 0.147 0.853 31 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.367 -12.180 11.768 17.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.818 5.818 3 C 0.121 3.879 4 C -0.571 4.571 5 H 0.082 0.918 6 C -0.140 4.140 7 N -0.532 5.532 8 Si 0.724 3.276 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.208 1.208 12 S 2.763 3.237 13 O -0.958 6.958 14 O -0.919 6.919 15 C -0.743 4.743 16 C -0.024 4.024 17 C -0.088 4.088 18 Cl -0.031 7.031 19 C -0.072 4.072 20 C -0.141 4.141 21 C 0.021 3.979 22 Cl 0.029 6.971 23 H 0.058 0.942 24 H 0.105 0.895 25 H 0.085 0.915 26 H 0.050 0.950 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.177 0.823 30 H 0.165 0.835 31 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -2.912 -12.446 11.154 16.964 hybrid contribution -0.165 0.555 0.066 0.583 sum -3.077 -11.891 11.220 16.636 Atomic orbital electron populations 1.21430 0.79501 1.03991 1.00497 1.57240 1.14559 1.22162 1.87858 1.19523 0.92527 0.77971 0.97863 1.21521 1.32954 1.04845 0.97764 0.91808 1.24932 0.94857 0.96940 0.97221 1.69926 1.33506 1.17216 1.32508 0.86463 0.78037 0.79103 0.83989 1.19575 1.20945 1.20802 1.02690 0.74374 0.73146 0.73499 1.93508 1.69720 1.62700 1.69852 1.93639 1.35413 1.83443 1.79422 1.31636 1.09145 1.05523 1.28029 1.20850 0.93866 0.92800 0.94915 1.21016 1.01066 0.91735 0.94947 1.98381 1.77528 1.35361 1.91853 1.21261 0.93305 0.93012 0.99597 1.21195 1.01142 0.97006 0.94729 1.20891 0.93015 0.90049 0.93897 1.98565 1.76679 1.31710 1.90105 0.94154 0.89472 0.91464 0.94973 0.92015 0.92697 0.82314 0.83513 0.83145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.55 10.61 59.85 0.64 2.19 16 2 N -0.98 -20.02 3.21 -123.05 -0.39 -20.42 16 3 C 0.24 5.92 4.22 -5.19 -0.02 5.90 16 4 C -0.53 -14.45 8.96 -34.44 -0.31 -14.75 16 5 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 7 N -0.89 -25.40 13.29 55.43 0.74 -24.66 16 8 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 9 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 12 S 2.68 52.73 5.11 -107.50 -0.55 52.18 16 13 O -0.97 -19.31 15.72 -57.17 -0.90 -20.21 16 14 O -0.93 -21.21 15.11 -57.17 -0.86 -22.08 16 15 C -0.66 -10.63 5.91 -39.55 -0.23 -10.87 16 16 C 0.00 -0.06 9.33 -39.55 -0.37 -0.43 16 17 C -0.06 -0.70 6.32 -39.50 -0.25 -0.95 16 18 Cl -0.06 -0.61 28.96 -51.86 -1.50 -2.11 16 19 C -0.05 -0.54 9.83 -39.55 -0.39 -0.93 16 20 C -0.12 -1.41 9.83 -39.55 -0.39 -1.80 16 21 C 0.05 0.76 6.30 -39.50 -0.25 0.51 16 22 Cl 0.00 -0.01 22.94 -51.86 -1.19 -1.20 16 23 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.09 1.50 7.79 -51.93 -0.40 1.10 16 25 H 0.07 1.04 7.09 -51.93 -0.37 0.67 16 26 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.06 1.58 4.37 -51.93 -0.23 1.35 16 28 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 29 H 0.16 2.03 7.33 -52.48 -0.38 1.65 16 30 H 0.15 1.02 8.06 -52.49 -0.42 0.59 16 31 H 0.15 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 307.07 15.07 4.63 4.63 Total: -1.00 -31.32 307.07 -9.35 -40.67 By element: Atomic # 1 Polarization: -0.92 SS G_CDS: -2.62 Total: -3.54 kcal Atomic # 6 Polarization: -17.81 SS G_CDS: -1.67 Total: -19.48 kcal Atomic # 7 Polarization: -45.42 SS G_CDS: 0.34 Total: -45.08 kcal Atomic # 8 Polarization: -40.53 SS G_CDS: -1.76 Total: -42.29 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: 52.73 SS G_CDS: -0.55 Total: 52.18 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -2.69 Total: -3.31 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.32 -9.35 -40.67 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005860695.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.166 kcal (2) G-P(sol) polarization free energy of solvation -31.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds