Wall clock time and date at job start Tue Mar 31 2020 13:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46507 * 119.99942 * 2 1 4 4 C 1.50696 * 109.46667 * 287.52615 * 3 2 1 5 5 H 1.08001 * 120.00320 * 359.97438 * 4 3 2 6 6 C 1.37879 * 119.99553 * 180.02562 * 4 3 2 7 7 N 1.31511 * 120.00196 * 359.97438 * 6 4 3 8 8 Si 1.86809 * 119.99774 * 179.97438 * 6 4 3 9 9 H 1.48496 * 109.47060 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47048 * 119.99559 * 8 6 4 11 11 H 1.48498 * 109.46954 * 239.99461 * 8 6 4 12 12 S 1.65606 * 120.00193 * 179.97438 * 2 1 3 13 13 O 1.42100 * 106.39913 * 30.34229 * 12 2 1 14 14 O 1.42101 * 106.40065 * 163.26395 * 12 2 1 15 15 C 1.76194 * 107.21875 * 276.80354 * 12 2 1 16 16 C 1.38223 * 119.99902 * 113.96401 * 15 12 2 17 17 C 1.38334 * 119.99858 * 179.72004 * 16 15 12 18 18 Cl 1.73598 * 120.00029 * 180.30087 * 17 16 15 19 19 C 1.38376 * 120.00155 * 0.57721 * 17 16 15 20 20 C 1.38179 * 119.99875 * 359.70035 * 19 17 16 21 21 C 1.38332 * 120.00384 * 294.24094 * 15 12 2 22 22 Cl 1.73601 * 119.99908 * 0.02562 * 21 15 12 23 23 H 1.08993 * 109.47319 * 269.99878 * 1 2 3 24 24 H 1.09002 * 109.46830 * 30.00745 * 1 2 3 25 25 H 1.09004 * 109.46623 * 149.99919 * 1 2 3 26 26 H 1.08994 * 109.46950 * 47.52151 * 3 2 1 27 27 H 1.09001 * 109.47031 * 167.52232 * 3 2 1 28 28 H 0.97001 * 120.00166 * 180.02562 * 7 6 4 29 29 H 1.08004 * 119.99893 * 0.02562 * 16 15 12 30 30 H 1.08001 * 120.00302 * 179.67994 * 19 17 16 31 31 H 1.07994 * 120.00016 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.0781 1.9176 -1.3549 5 1 1.5134 1.4332 -2.1378 6 6 2.6906 3.1293 -1.5953 7 7 3.3786 3.7189 -0.6421 8 14 2.5431 3.9334 -3.2750 9 1 1.7227 3.0734 -4.1651 10 1 1.8938 5.2612 -3.1329 11 1 3.8963 4.1044 -3.8624 12 16 2.2931 -1.4342 0.0006 13 8 1.4748 -2.3702 -0.6876 14 8 3.6242 -1.1290 -0.3920 15 6 2.3812 -1.9848 1.6720 16 6 1.7221 -3.1377 2.0555 17 6 1.7961 -3.5731 3.3664 18 17 0.9748 -5.0253 3.8463 19 6 2.5200 -2.8481 4.2965 20 6 3.1742 -1.6925 3.9145 21 6 3.1053 -1.2603 2.6017 22 17 3.9266 0.1919 2.1219 23 1 -0.3633 0.0000 1.0276 24 1 -0.3633 0.8899 -0.5140 25 1 -0.3633 -0.8900 -0.5139 26 1 1.7782 1.9304 0.7579 27 1 3.2481 1.0817 0.2220 28 1 3.8092 4.5715 -0.8111 29 1 1.1535 -3.7012 1.3305 30 1 2.5735 -3.1853 5.3212 31 1 3.7388 -1.1265 4.6404 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005860695.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:44 Heat of formation + Delta-G solvation = -70.395112 kcal Electronic energy + Delta-G solvation = -21052.484868 eV Core-core repulsion = 17512.441864 eV Total energy + Delta-G solvation = -3540.043003 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 322.994 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.59809 -38.49127 -37.93375 -37.42469 -37.21397 -36.92217 -34.47865 -32.74182 -31.75666 -29.59674 -26.93072 -24.82279 -24.16562 -24.03168 -20.30577 -19.29982 -18.73863 -18.31215 -17.55092 -17.47450 -16.77664 -16.42669 -16.27617 -15.30228 -15.26254 -15.18400 -14.88173 -14.09781 -13.97612 -13.80894 -13.62942 -13.51303 -13.21415 -13.18746 -13.02314 -12.90633 -12.74567 -12.45431 -12.41210 -12.20638 -12.07447 -11.97352 -11.78929 -11.32273 -10.75024 -10.51973 -9.92337 -9.76698 -8.17206 -6.28352 -0.81227 -0.57657 -0.26764 0.70509 0.94440 1.41019 1.43588 1.54844 1.83863 2.14766 2.42979 2.66452 3.14690 3.17375 3.51297 3.71615 3.92377 3.95171 4.12803 4.36242 4.46057 4.67774 4.71502 4.77786 4.84124 5.13631 5.23379 5.29921 5.49143 5.76379 5.88341 6.15545 6.81008 7.39650 8.90615 Molecular weight = 322.99amu Principal moments of inertia in cm(-1) A = 0.024216 B = 0.004477 C = 0.004068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.969982 B = 6253.165616 C = 6881.434151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.988 5.988 3 C 0.256 3.744 4 C -0.551 4.551 5 H 0.058 0.942 6 C 0.014 3.986 7 N -0.922 5.922 8 Si 0.956 3.044 9 H -0.267 1.267 10 H -0.272 1.272 11 H -0.281 1.281 12 S 2.685 3.315 13 O -0.979 6.979 14 O -0.972 6.972 15 C -0.670 4.670 16 C -0.011 4.011 17 C -0.057 4.057 18 Cl -0.040 7.040 19 C -0.030 4.030 20 C -0.111 4.111 21 C 0.032 3.968 22 Cl -0.035 7.035 23 H 0.069 0.931 24 H 0.078 0.922 25 H 0.080 0.920 26 H 0.020 0.980 27 H 0.051 0.949 28 H 0.266 0.734 29 H 0.164 0.836 30 H 0.192 0.808 31 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.209 -13.594 13.632 19.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.828 5.828 3 C 0.133 3.867 4 C -0.591 4.591 5 H 0.076 0.924 6 C -0.186 4.186 7 N -0.561 5.561 8 Si 0.781 3.219 9 H -0.191 1.191 10 H -0.198 1.198 11 H -0.207 1.207 12 S 2.775 3.225 13 O -0.969 6.969 14 O -0.962 6.962 15 C -0.757 4.757 16 C -0.031 4.031 17 C -0.085 4.085 18 Cl -0.011 7.011 19 C -0.049 4.049 20 C -0.130 4.130 21 C 0.003 3.997 22 Cl -0.006 7.006 23 H 0.088 0.912 24 H 0.096 0.904 25 H 0.098 0.902 26 H 0.038 0.962 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.181 0.819 30 H 0.209 0.791 31 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -3.787 -13.853 12.962 19.346 hybrid contribution 0.033 0.788 -0.336 0.857 sum -3.754 -13.065 12.626 18.553 Atomic orbital electron populations 1.21641 0.77674 1.04185 1.02511 1.57122 1.15839 1.21095 1.88740 1.19107 0.92373 0.79184 0.96071 1.21893 1.32853 1.05380 0.98938 0.92380 1.25722 0.94605 0.97577 1.00685 1.70022 1.34229 1.17643 1.34238 0.85534 0.77990 0.78506 0.79837 1.19149 1.19760 1.20704 1.01965 0.73261 0.72648 0.74593 1.93481 1.69621 1.62495 1.71348 1.93583 1.37348 1.83971 1.81294 1.30862 1.11940 1.07303 1.25645 1.20941 0.93767 0.92072 0.96336 1.21133 1.00744 0.92347 0.94286 1.98399 1.77083 1.34086 1.91491 1.21762 0.90606 0.91300 1.01187 1.21568 1.00641 0.97376 0.93396 1.21046 0.93864 0.89279 0.95461 1.98551 1.77442 1.33939 1.90661 0.91238 0.90360 0.90160 0.96204 0.93156 0.92479 0.81869 0.79112 0.80113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.86 10.61 127.77 1.36 4.22 16 2 N -0.99 -41.37 3.21 -543.23 -1.74 -43.11 16 3 C 0.26 12.91 4.22 85.63 0.36 13.27 16 4 C -0.55 -30.78 8.96 25.60 0.23 -30.55 16 5 H 0.06 3.21 7.81 -2.91 -0.02 3.19 16 6 C 0.01 0.77 5.46 84.66 0.46 1.24 16 7 N -0.92 -53.55 13.29 21.45 0.28 -53.27 16 8 Si 0.96 44.05 29.54 68.60 2.03 46.07 16 9 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 10 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 11 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 12 S 2.68 107.88 5.11 -56.49 -0.29 107.59 16 13 O -0.98 -39.43 15.72 -128.00 -2.01 -41.44 16 14 O -0.97 -46.26 15.11 -128.00 -1.93 -48.19 16 15 C -0.67 -21.09 5.91 22.29 0.13 -20.95 16 16 C -0.01 -0.29 9.33 22.29 0.21 -0.08 16 17 C -0.06 -1.13 6.32 22.33 0.14 -0.99 16 18 Cl -0.04 -0.66 28.96 -2.72 -0.08 -0.74 16 19 C -0.03 -0.47 9.83 22.29 0.22 -0.25 16 20 C -0.11 -2.21 9.83 22.29 0.22 -1.99 16 21 C 0.03 0.94 6.30 22.33 0.14 1.08 16 22 Cl -0.04 -1.30 22.94 -2.72 -0.06 -1.36 16 23 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 24 H 0.08 2.74 7.79 -2.39 -0.02 2.72 16 25 H 0.08 2.45 7.09 -2.39 -0.02 2.43 16 26 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.05 2.69 4.37 -2.39 -0.01 2.68 16 28 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 29 H 0.16 3.94 7.33 -2.91 -0.02 3.92 16 30 H 0.19 1.40 8.06 -2.91 -0.02 1.38 16 31 H 0.18 2.49 8.06 -2.91 -0.02 2.46 16 Total: -1.00 -69.52 307.07 0.83 -68.69 By element: Atomic # 1 Polarization: -0.40 SS G_CDS: 1.17 Total: 0.78 kcal Atomic # 6 Polarization: -38.49 SS G_CDS: 3.47 Total: -35.02 kcal Atomic # 7 Polarization: -94.92 SS G_CDS: -1.46 Total: -96.38 kcal Atomic # 8 Polarization: -85.69 SS G_CDS: -3.95 Total: -89.64 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal Atomic # 16 Polarization: 107.88 SS G_CDS: -0.29 Total: 107.59 kcal Atomic # 17 Polarization: -1.96 SS G_CDS: -0.14 Total: -2.10 kcal Total: -69.52 0.83 -68.69 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005860695.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.706 kcal (2) G-P(sol) polarization free energy of solvation -69.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds