Wall clock time and date at job start Tue Mar 31 2020 13:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86807 * 120.00075 * 2 1 4 4 H 1.48496 * 109.47185 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.46745 * 300.00295 * 3 2 1 6 6 H 1.48502 * 109.46806 * 59.99709 * 3 2 1 7 7 C 1.37882 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99890 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99763 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46942 * 179.97438 * 9 7 2 11 11 N 1.46505 * 109.47222 * 180.02562 * 10 9 7 12 12 C 1.34517 * 124.45596 * 269.95995 * 11 10 9 13 13 O 1.21449 * 125.70963 * 0.02562 * 12 11 10 14 14 C 1.47778 * 108.59030 * 180.02562 * 12 11 10 15 15 C 1.38608 * 134.28229 * 180.30219 * 14 12 11 16 16 C 1.38549 * 119.73384 * 180.19128 * 15 14 12 17 17 C 1.38338 * 120.45275 * 359.45228 * 16 15 14 18 18 Br 1.89101 * 119.78608 * 180.28012 * 17 16 15 19 19 C 1.38742 * 120.43372 * 0.29744 * 17 16 15 20 20 C 1.38525 * 119.70822 * 359.97438 * 19 17 16 21 21 C 1.34522 * 124.45867 * 90.00031 * 11 10 9 22 22 O 1.21444 * 125.71372 * 359.96689 * 21 11 10 23 23 H 0.96995 * 120.00034 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.47297 * 60.00313 * 9 7 2 25 25 H 1.08997 * 109.47234 * 299.99786 * 9 7 2 26 26 H 1.09001 * 109.47020 * 60.00061 * 10 9 7 27 27 H 1.09001 * 109.47702 * 300.00281 * 10 9 7 28 28 H 1.07998 * 120.12999 * 359.91996 * 15 14 12 29 29 H 1.08002 * 119.77707 * 179.73319 * 16 15 14 30 30 H 1.08000 * 120.14565 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0015 11 7 1.5129 -4.9308 0.0020 12 6 1.1335 -5.5901 1.1114 13 8 1.3404 -5.2333 2.2537 14 6 0.4230 -6.8215 0.7079 15 6 -0.1816 -7.8602 1.3983 16 6 -0.7741 -8.8981 0.6973 17 6 -0.7761 -8.8987 -0.6861 18 35 -1.5972 -10.3208 -1.6237 19 6 -0.1792 -7.8628 -1.3901 20 6 0.4217 -6.8217 -0.7017 21 6 1.1319 -5.5902 -1.1069 22 8 1.3368 -5.2333 -2.2495 23 1 -0.4850 0.8400 -0.0004 24 1 0.6242 -2.5575 -0.8880 25 1 0.6248 -2.5563 0.8919 26 1 2.8727 -3.6039 0.8909 27 1 2.8714 -3.6047 -0.8890 28 1 -0.1870 -7.8628 2.4782 29 1 -1.2417 -9.7101 1.2345 30 1 -0.1831 -7.8682 -2.4701 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054138686.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:54 Heat of formation + Delta-G solvation = -20.281743 kcal Electronic energy + Delta-G solvation = -18381.343437 eV Core-core repulsion = 15188.725805 eV Total energy + Delta-G solvation = -3192.617632 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 322.994 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.19162 -38.75199 -38.39792 -35.72335 -33.91879 -32.68868 -31.81914 -30.61457 -29.18139 -25.68696 -24.99837 -23.38305 -22.08720 -21.35801 -19.68844 -17.73016 -17.24356 -16.72608 -16.14747 -15.96411 -15.26093 -14.88400 -14.51080 -14.34536 -14.33041 -13.77863 -13.56687 -13.08453 -12.70437 -12.45917 -12.09743 -11.65613 -11.28332 -11.01977 -10.90519 -10.80558 -10.43714 -10.32647 -10.14245 -10.00045 -9.61323 -9.31190 -9.29019 -8.96720 -8.44246 -6.08476 -4.12888 -0.19010 0.56515 1.05000 1.81242 2.61978 3.15280 3.23935 3.28910 3.36118 3.40247 3.54442 4.25791 4.26695 4.41055 4.54857 4.75285 4.82508 5.28304 5.33751 5.47908 5.52503 5.62215 5.78946 5.85654 6.06850 6.19062 6.54739 6.92953 7.37862 7.50717 7.60034 7.82210 7.91831 8.23942 8.92244 9.51744 11.03196 Molecular weight = 322.99amu Principal moments of inertia in cm(-1) A = 0.031446 B = 0.002883 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.189772 B = 9710.400257 C =10087.093340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.899 3.101 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.523 4.523 8 H 0.061 0.939 9 C 0.010 3.990 10 C 0.112 3.888 11 N -0.565 5.565 12 C 0.570 3.430 13 O -0.455 6.455 14 C -0.118 4.118 15 C -0.043 4.043 16 C -0.071 4.071 17 C -0.079 4.079 18 Br -0.031 7.031 19 C -0.023 4.023 20 C -0.127 4.127 21 C 0.572 3.428 22 O -0.455 6.455 23 H 0.262 0.738 24 H 0.023 0.977 25 H 0.023 0.977 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.152 0.848 29 H 0.150 0.850 30 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.698 -24.747 -0.833 25.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.562 4.562 8 H 0.079 0.921 9 C -0.027 4.027 10 C -0.006 4.006 11 N -0.306 5.306 12 C 0.357 3.643 13 O -0.326 6.326 14 C -0.122 4.122 15 C -0.063 4.063 16 C -0.091 4.091 17 C -0.159 4.159 18 Br 0.054 6.946 19 C -0.043 4.043 20 C -0.132 4.132 21 C 0.359 3.641 22 O -0.326 6.326 23 H 0.072 0.928 24 H 0.042 0.958 25 H 0.042 0.958 26 H 0.105 0.895 27 H 0.105 0.895 28 H 0.170 0.830 29 H 0.168 0.832 30 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -3.865 -24.673 -1.195 25.002 hybrid contribution 0.470 1.313 0.178 1.406 sum -3.395 -23.360 -1.018 23.627 Atomic orbital electron populations 1.69978 1.06166 1.26828 1.49968 1.25007 0.94889 0.99466 0.94860 0.86432 0.80052 0.83267 0.77646 1.19562 1.20889 1.20889 1.21014 0.93147 0.90185 1.51865 0.92092 1.19439 0.94264 0.90804 0.98224 1.22339 0.95786 0.79072 1.03380 1.46909 1.52323 1.24200 1.07139 1.18224 0.78168 0.83145 0.84770 1.90808 1.52156 1.70280 1.19356 1.20944 1.00179 0.96567 0.94502 1.20777 0.93741 0.90603 1.01174 1.21360 0.97274 0.98519 0.91901 1.21959 1.03067 0.95866 0.94994 1.96797 1.79365 1.42895 1.75505 1.20640 0.92787 0.89821 1.01078 1.20719 1.01382 0.96619 0.94494 1.18173 0.78094 0.83034 0.84777 1.90809 1.52172 1.70246 1.19325 0.92821 0.95815 0.95819 0.89479 0.89490 0.83048 0.83250 0.83130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.87 13.29 55.43 0.74 -26.13 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 7 C -0.52 -14.71 9.11 -34.44 -0.31 -15.03 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 9 C 0.01 0.27 5.30 -27.89 -0.15 0.12 16 10 C 0.11 2.35 5.68 -4.04 -0.02 2.33 16 11 N -0.56 -10.56 2.62 -117.63 -0.31 -10.87 16 12 C 0.57 9.85 8.02 -12.48 -0.10 9.75 16 13 O -0.46 -8.91 17.68 5.41 0.10 -8.81 16 14 C -0.12 -1.57 6.40 -104.83 -0.67 -2.25 16 15 C -0.04 -0.42 10.09 -39.33 -0.40 -0.81 16 16 C -0.07 -0.56 9.76 -39.43 -0.39 -0.94 16 17 C -0.08 -0.72 6.23 -39.36 -0.25 -0.96 16 18 Br -0.03 -0.25 33.68 -68.01 -2.29 -2.54 16 19 C -0.02 -0.25 9.83 -39.29 -0.39 -0.63 16 20 C -0.13 -1.75 6.40 -104.84 -0.67 -2.42 16 21 C 0.57 10.03 8.02 -12.45 -0.10 9.93 16 22 O -0.45 -9.06 17.68 5.41 0.10 -8.96 16 23 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 24 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.02 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.09 1.76 7.97 -51.93 -0.41 1.35 16 27 H 0.09 1.76 7.96 -51.93 -0.41 1.35 16 28 H 0.15 1.14 8.06 -52.49 -0.42 0.72 16 29 H 0.15 0.75 8.06 -52.49 -0.42 0.33 16 30 H 0.15 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 298.56 15.07 4.50 4.50 Total: -1.00 -32.34 298.56 -8.21 -40.56 By element: Atomic # 1 Polarization: -2.53 SS G_CDS: -2.48 Total: -5.01 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: -3.54 Total: 0.71 kcal Atomic # 7 Polarization: -37.43 SS G_CDS: 0.43 Total: -37.00 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: 0.19 Total: -17.77 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 35 Polarization: -0.25 SS G_CDS: -2.29 Total: -2.54 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -32.34 -8.21 -40.56 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054138686.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.277 kcal (2) G-P(sol) polarization free energy of solvation -32.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds