Wall clock time and date at job start Tue Mar 31 2020 13:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86807 * 120.00075 * 2 1 4 4 H 1.48496 * 109.47185 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.46745 * 300.00295 * 3 2 1 6 6 H 1.48502 * 109.46806 * 59.99709 * 3 2 1 7 7 C 1.37882 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99890 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99763 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46942 * 179.97438 * 9 7 2 11 11 N 1.46505 * 109.47222 * 180.02562 * 10 9 7 12 12 C 1.34517 * 124.45596 * 269.95995 * 11 10 9 13 13 O 1.21449 * 125.70963 * 0.02562 * 12 11 10 14 14 C 1.47778 * 108.59030 * 180.02562 * 12 11 10 15 15 C 1.38608 * 134.28229 * 180.30219 * 14 12 11 16 16 C 1.38549 * 119.73384 * 180.19128 * 15 14 12 17 17 C 1.38338 * 120.45275 * 359.45228 * 16 15 14 18 18 Br 1.89101 * 119.78608 * 180.28012 * 17 16 15 19 19 C 1.38742 * 120.43372 * 0.29744 * 17 16 15 20 20 C 1.38525 * 119.70822 * 359.97438 * 19 17 16 21 21 C 1.34522 * 124.45867 * 90.00031 * 11 10 9 22 22 O 1.21444 * 125.71372 * 359.96689 * 21 11 10 23 23 H 0.96995 * 120.00034 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.47297 * 60.00313 * 9 7 2 25 25 H 1.08997 * 109.47234 * 299.99786 * 9 7 2 26 26 H 1.09001 * 109.47020 * 60.00061 * 10 9 7 27 27 H 1.09001 * 109.47702 * 300.00281 * 10 9 7 28 28 H 1.07998 * 120.12999 * 359.91996 * 15 14 12 29 29 H 1.08002 * 119.77707 * 179.73319 * 16 15 14 30 30 H 1.08000 * 120.14565 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0015 11 7 1.5129 -4.9308 0.0020 12 6 1.1335 -5.5901 1.1114 13 8 1.3404 -5.2333 2.2537 14 6 0.4230 -6.8215 0.7079 15 6 -0.1816 -7.8602 1.3983 16 6 -0.7741 -8.8981 0.6973 17 6 -0.7761 -8.8987 -0.6861 18 35 -1.5972 -10.3208 -1.6237 19 6 -0.1792 -7.8628 -1.3901 20 6 0.4217 -6.8217 -0.7017 21 6 1.1319 -5.5902 -1.1069 22 8 1.3368 -5.2333 -2.2495 23 1 -0.4850 0.8400 -0.0004 24 1 0.6242 -2.5575 -0.8880 25 1 0.6248 -2.5563 0.8919 26 1 2.8727 -3.6039 0.8909 27 1 2.8714 -3.6047 -0.8890 28 1 -0.1870 -7.8628 2.4782 29 1 -1.2417 -9.7101 1.2345 30 1 -0.1831 -7.8682 -2.4701 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054138686.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:54 Heat of formation + Delta-G solvation = -40.301603 kcal Electronic energy + Delta-G solvation = -18382.211563 eV Core-core repulsion = 15188.725805 eV Total energy + Delta-G solvation = -3193.485758 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 322.994 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.47118 -39.83285 -39.75776 -37.22863 -35.72706 -34.08780 -32.87367 -31.87411 -30.44487 -27.41266 -26.24249 -24.80619 -23.24085 -22.98521 -21.01058 -18.94281 -18.87693 -18.23698 -17.68274 -17.15476 -16.51537 -16.50636 -15.99548 -15.57160 -15.25759 -15.23774 -15.01015 -14.56555 -14.32081 -13.70262 -13.53292 -13.01485 -12.93497 -12.71603 -12.20442 -12.13312 -12.07429 -11.84324 -11.54819 -11.43179 -11.33915 -10.79188 -10.66137 -10.44010 -10.06130 -8.28730 -6.42328 -1.24754 -0.29711 0.30542 0.71933 1.23727 1.39954 1.40254 1.54205 1.78807 2.29060 2.37439 2.47132 3.05736 3.06742 3.38863 3.76586 3.89632 3.98269 4.10283 4.27094 4.36779 4.54990 4.59097 4.63395 4.74523 4.84973 5.23360 5.29581 5.30165 5.65689 5.67268 6.02306 6.03345 6.46886 6.72654 7.27994 8.84420 Molecular weight = 322.99amu Principal moments of inertia in cm(-1) A = 0.031446 B = 0.002883 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.189772 B = 9710.400257 C =10087.093340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.976 3.024 4 H -0.257 1.257 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.546 4.546 8 H 0.073 0.927 9 C 0.022 3.978 10 C 0.126 3.874 11 N -0.579 5.579 12 C 0.567 3.433 13 O -0.488 6.488 14 C -0.131 4.131 15 C -0.027 4.027 16 C -0.045 4.045 17 C -0.076 4.076 18 Br -0.010 7.010 19 C -0.017 4.017 20 C -0.143 4.143 21 C 0.568 3.432 22 O -0.491 6.491 23 H 0.266 0.734 24 H -0.010 1.010 25 H -0.008 1.008 26 H 0.094 0.906 27 H 0.092 0.908 28 H 0.179 0.821 29 H 0.192 0.808 30 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.939 -26.877 -0.312 27.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.799 3.201 4 H -0.180 1.180 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.584 4.584 8 H 0.091 0.909 9 C -0.016 4.016 10 C 0.006 3.994 11 N -0.319 5.319 12 C 0.357 3.643 13 O -0.361 6.361 14 C -0.135 4.135 15 C -0.046 4.046 16 C -0.065 4.065 17 C -0.156 4.156 18 Br 0.076 6.924 19 C -0.037 4.037 20 C -0.147 4.147 21 C 0.359 3.641 22 O -0.365 6.365 23 H 0.075 0.925 24 H 0.008 0.992 25 H 0.010 0.990 26 H 0.112 0.888 27 H 0.110 0.890 28 H 0.196 0.804 29 H 0.209 0.791 30 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -4.110 -26.846 -0.675 27.168 hybrid contribution 0.432 1.803 -0.001 1.854 sum -3.678 -25.043 -0.677 25.321 Atomic orbital electron populations 1.70120 1.08096 1.28106 1.50873 1.26065 0.95828 1.03799 0.94108 0.85238 0.79146 0.77867 0.77827 1.18025 1.20285 1.20209 1.21485 0.93966 0.91167 1.51752 0.90907 1.19210 0.94441 0.93004 0.94963 1.21885 0.94597 0.78932 1.03948 1.46920 1.52728 1.23678 1.08608 1.18819 0.77523 0.84112 0.83835 1.90773 1.53612 1.71453 1.20251 1.20684 1.02194 0.96340 0.94322 1.21161 0.91732 0.89161 1.02532 1.21839 0.94969 0.98317 0.91367 1.22160 1.02077 0.95594 0.95776 1.96850 1.78759 1.41396 1.75383 1.20790 0.91968 0.89290 1.01676 1.20331 1.03441 0.96197 0.94753 1.18779 0.77445 0.84032 0.83893 1.90769 1.53798 1.71513 1.20406 0.92520 0.99164 0.98996 0.88750 0.88964 0.80406 0.79071 0.82275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.03 13.29 21.45 0.28 -57.74 16 2 C 0.00 0.02 5.46 84.66 0.46 0.48 16 3 Si 0.98 44.70 29.54 68.60 2.03 46.73 16 4 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 5 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 6 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 7 C -0.55 -31.59 9.11 25.60 0.23 -31.36 16 8 H 0.07 3.94 7.74 -2.91 -0.02 3.92 16 9 C 0.02 1.20 5.30 29.85 0.16 1.36 16 10 C 0.13 5.57 5.68 86.38 0.49 6.06 16 11 N -0.58 -22.80 2.62 -762.99 -2.00 -24.80 16 12 C 0.57 20.23 8.02 86.81 0.70 20.93 16 13 O -0.49 -19.70 17.68 -3.56 -0.06 -19.77 16 14 C -0.13 -3.41 6.40 -20.00 -0.13 -3.54 16 15 C -0.03 -0.42 10.09 22.43 0.23 -0.20 16 16 C -0.05 -0.51 9.76 22.37 0.22 -0.30 16 17 C -0.08 -1.12 6.23 22.41 0.14 -0.99 16 18 Br -0.01 -0.12 33.68 -20.37 -0.69 -0.81 16 19 C -0.02 -0.34 9.83 22.46 0.22 -0.12 16 20 C -0.14 -3.88 6.40 -20.00 -0.13 -4.01 16 21 C 0.57 20.89 8.02 86.82 0.70 21.59 16 22 O -0.49 -20.66 17.68 -3.54 -0.06 -20.72 16 23 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 24 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 25 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 26 H 0.09 3.99 7.97 -2.39 -0.02 3.97 16 27 H 0.09 3.93 7.96 -2.39 -0.02 3.91 16 28 H 0.18 1.95 8.06 -2.91 -0.02 1.93 16 29 H 0.19 0.69 8.06 -2.91 -0.02 0.67 16 30 H 0.16 2.87 8.06 -2.91 -0.02 2.85 16 Total: -1.00 -74.07 298.56 3.96 -70.11 By element: Atomic # 1 Polarization: -4.10 SS G_CDS: 1.18 Total: -2.92 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: 3.29 Total: 9.91 kcal Atomic # 7 Polarization: -80.82 SS G_CDS: -1.72 Total: -82.54 kcal Atomic # 8 Polarization: -40.36 SS G_CDS: -0.13 Total: -40.49 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Atomic # 35 Polarization: -0.12 SS G_CDS: -0.69 Total: -0.81 kcal Total: -74.07 3.96 -70.11 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054138686.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.808 kcal (2) G-P(sol) polarization free energy of solvation -74.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds