Wall clock time and date at job start Tue Mar 31 2020 13:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38380 * 119.85280 * 2 1 4 4 C 1.37914 * 120.16171 * 179.72189 * 3 2 1 5 5 C 1.39665 * 119.86755 * 0.48639 * 4 3 2 6 6 C 1.47734 * 120.14624 * 179.79215 * 5 4 3 7 7 O 1.21591 * 119.99925 * 154.04938 * 6 5 4 8 8 N 1.34776 * 119.99926 * 334.05095 * 6 5 4 9 9 C 1.36867 * 120.00094 * 174.34878 * 8 6 5 10 10 H 1.08010 * 119.99642 * 223.22283 * 9 8 6 11 11 C 1.39048 * 120.00623 * 43.21547 * 9 8 6 12 12 N 1.31359 * 120.00338 * 199.19656 * 11 9 8 13 13 Si 1.86799 * 119.99427 * 19.19688 * 11 9 8 14 14 H 1.48501 * 109.47185 * 267.79680 * 13 11 9 15 15 H 1.48498 * 109.47411 * 27.80121 * 13 11 9 16 16 H 1.48497 * 109.46881 * 147.80040 * 13 11 9 17 17 C 1.46503 * 119.99992 * 354.34053 * 8 6 5 18 18 C 1.52999 * 117.49855 * 184.26222 * 17 8 6 19 19 C 1.52994 * 117.49838 * 115.63739 * 17 8 6 20 20 C 1.39610 * 119.71114 * 359.51525 * 5 4 3 21 21 C 1.38059 * 119.83025 * 0.25244 * 20 5 4 22 22 Br 1.89097 * 119.93120 * 179.97438 * 21 20 5 23 23 H 1.08994 * 109.47451 * 270.01897 * 1 2 3 24 24 H 1.08995 * 109.46839 * 30.02581 * 1 2 3 25 25 H 1.09006 * 109.46849 * 150.02005 * 1 2 3 26 26 H 1.07998 * 119.91488 * 359.97438 * 3 2 1 27 27 H 1.08004 * 120.06944 * 180.27668 * 4 3 2 28 28 H 0.96999 * 119.99997 * 179.97438 * 12 11 9 29 29 H 1.08998 * 115.54902 * 329.96645 * 17 8 6 30 30 H 1.09001 * 117.49837 * 359.97438 * 18 17 8 31 31 H 1.09000 * 117.49834 * 145.02357 * 18 17 8 32 32 H 1.09000 * 117.49983 * 214.97749 * 19 17 8 33 33 H 1.09002 * 117.50019 * 359.97438 * 19 17 8 34 34 H 1.07996 * 120.08428 * 180.22833 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2002 0.0000 4 6 3.5750 1.2076 0.0058 5 6 4.2770 0.0003 0.0014 6 6 5.7544 0.0011 0.0029 7 8 6.3624 -0.9474 0.4603 8 7 6.4282 1.0531 -0.5027 9 6 7.7917 1.1071 -0.3974 10 1 8.2757 2.0322 -0.1207 11 6 8.5539 -0.0288 -0.6464 12 7 9.7858 -0.1050 -0.1966 13 14 7.8260 -1.4467 -1.6207 14 1 7.2106 -2.4242 -0.6874 15 1 6.7895 -0.9287 -2.5493 16 1 8.8995 -2.1145 -2.3998 17 6 5.7011 2.1389 -1.1651 18 6 6.5283 3.2552 -1.8057 19 6 5.7518 3.5228 -0.5148 20 6 3.5766 -1.2074 0.0014 21 6 2.1961 -1.2007 0.0005 22 35 1.2446 -2.8348 -0.0003 23 1 -0.3634 0.0003 1.0276 24 1 -0.3633 0.8897 -0.5142 25 1 -0.3633 -0.8902 -0.5136 26 1 1.6521 2.1333 -0.0004 27 1 4.1110 2.1452 0.0103 28 1 10.3173 -0.8976 -0.3700 29 1 4.7750 1.8498 -1.6619 30 1 7.6135 3.1820 -1.7339 31 1 6.1464 3.7008 -2.7243 32 1 4.8592 4.1445 -0.5842 33 1 6.3258 3.6254 0.4061 34 1 4.1134 -2.1445 0.0017 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266951310.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:00 Heat of formation + Delta-G solvation = 45.797256 kcal Electronic energy + Delta-G solvation = -19597.614825 eV Core-core repulsion = 16543.695688 eV Total energy + Delta-G solvation = -3053.919137 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 323.026 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.08618 -38.33399 -36.62327 -33.27456 -32.87664 -31.97876 -31.44887 -29.32122 -27.57856 -24.86915 -22.72291 -22.41427 -21.90743 -20.81373 -19.77326 -17.66465 -16.36439 -15.77117 -15.64756 -14.86088 -14.65065 -14.31982 -14.08899 -13.71559 -13.48753 -13.40851 -12.85138 -12.55741 -12.32006 -12.17484 -11.90596 -11.33873 -11.26417 -11.07572 -10.96256 -10.83896 -10.35957 -10.11271 -10.08811 -9.98193 -9.85223 -8.82180 -8.65278 -8.58014 -8.29228 -7.60409 -6.27568 -4.05974 1.03024 1.30898 1.65631 3.17660 3.46708 3.53499 3.66432 4.03339 4.19112 4.43476 4.55877 4.75402 4.81549 5.01852 5.13968 5.27422 5.29972 5.40001 5.48284 5.49762 5.54169 5.67608 5.69444 5.88204 5.99678 6.04012 6.16054 6.28610 6.42104 6.51321 6.55368 6.75954 6.87477 7.73966 7.86785 8.64482 8.77725 9.31035 9.68096 10.75799 Molecular weight = 323.03amu Principal moments of inertia in cm(-1) A = 0.017811 B = 0.005265 C = 0.004254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.706620 B = 5317.202503 C = 6580.830347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.055 4.055 3 C -0.125 4.125 4 C -0.090 4.090 5 C -0.102 4.102 6 C 0.481 3.519 7 O -0.534 6.534 8 N -0.421 5.421 9 C -0.349 4.349 10 H 0.099 0.901 11 C 0.094 3.906 12 N -0.859 5.859 13 Si 0.913 3.087 14 H -0.247 1.247 15 H -0.282 1.282 16 H -0.308 1.308 17 C 0.055 3.945 18 C -0.169 4.169 19 C -0.204 4.204 20 C -0.045 4.045 21 C -0.101 4.101 22 Br -0.057 7.057 23 H 0.076 0.924 24 H 0.070 0.930 25 H 0.075 0.925 26 H 0.132 0.868 27 H 0.154 0.846 28 H 0.275 0.725 29 H 0.116 0.884 30 H 0.114 0.886 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.558 1.828 -1.937 19.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.057 4.057 3 C -0.144 4.144 4 C -0.109 4.109 5 C -0.107 4.107 6 C 0.272 3.728 7 O -0.418 6.418 8 N -0.139 5.139 9 C -0.474 4.474 10 H 0.116 0.884 11 C -0.117 4.117 12 N -0.493 5.493 13 Si 0.745 3.255 14 H -0.173 1.173 15 H -0.207 1.207 16 H -0.238 1.238 17 C -0.050 4.050 18 C -0.207 4.207 19 C -0.242 4.242 20 C -0.065 4.065 21 C -0.180 4.180 22 Br 0.029 6.971 23 H 0.094 0.906 24 H 0.089 0.911 25 H 0.093 0.907 26 H 0.150 0.850 27 H 0.171 0.829 28 H 0.084 0.916 29 H 0.133 0.867 30 H 0.132 0.868 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.117 0.883 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -19.387 0.650 -1.676 19.470 hybrid contribution 0.019 -0.246 -0.485 0.545 sum -19.368 0.404 -2.161 19.492 Atomic orbital electron populations 1.20981 0.90517 1.03474 1.02954 1.19858 0.96359 0.91623 0.97906 1.20950 0.93968 0.96946 1.02545 1.22274 0.94210 0.99195 0.95213 1.20329 0.95099 0.93106 1.02144 1.18072 0.85620 0.85801 0.83290 1.90650 1.68169 1.33861 1.49107 1.42972 1.06461 1.16958 1.47551 1.18723 0.78160 1.00101 1.50429 0.88383 1.25361 0.94364 0.98290 0.93673 1.69708 1.09948 1.29684 1.39935 0.86361 0.77797 0.83316 0.78071 1.17267 1.20748 1.23811 1.22110 0.97898 0.84539 1.00468 1.23245 1.01064 1.01005 0.95370 1.23414 1.02831 0.99535 0.98457 1.21219 0.91446 0.99062 0.94817 1.21527 0.94294 0.90965 1.11185 1.96610 1.74962 1.27736 1.97813 0.90570 0.91079 0.90659 0.85033 0.82867 0.91558 0.86664 0.86812 0.89176 0.89061 0.88311 0.84346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.18 9.54 36.01 0.34 -0.83 16 2 C -0.06 -0.72 5.89 -104.50 -0.62 -1.33 16 3 C -0.13 -1.59 9.68 -39.65 -0.38 -1.98 16 4 C -0.09 -1.41 7.63 -39.17 -0.30 -1.71 16 5 C -0.10 -2.00 5.54 -104.97 -0.58 -2.58 16 6 C 0.48 11.70 5.92 -12.38 -0.07 11.63 16 7 O -0.53 -15.04 11.57 5.29 0.06 -14.98 16 8 N -0.42 -10.00 2.48 -108.83 -0.27 -10.27 16 9 C -0.35 -9.55 8.44 -15.00 -0.13 -9.68 16 10 H 0.10 2.77 7.41 -52.48 -0.39 2.38 16 11 C 0.09 2.73 4.87 -17.45 -0.08 2.64 16 12 N -0.86 -25.85 13.95 55.50 0.77 -25.07 16 13 Si 0.91 24.49 24.85 -169.99 -4.22 20.26 16 14 H -0.25 -6.90 6.06 56.52 0.34 -6.55 16 15 H -0.28 -7.36 7.11 56.52 0.40 -6.96 16 16 H -0.31 -8.08 7.11 56.52 0.40 -7.68 16 17 C 0.06 1.01 4.22 -67.93 -0.29 0.72 16 18 C -0.17 -2.78 9.80 -26.73 -0.26 -3.04 16 19 C -0.20 -3.08 8.96 -26.73 -0.24 -3.32 16 20 C -0.04 -0.82 9.33 -39.14 -0.37 -1.18 16 21 C -0.10 -1.53 6.21 -39.57 -0.25 -1.77 16 22 Br -0.06 -0.74 31.76 -68.01 -2.16 -2.90 16 23 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 24 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 25 H 0.07 0.72 6.62 -51.93 -0.34 0.38 16 26 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 27 H 0.15 2.25 4.00 -52.48 -0.21 2.04 16 28 H 0.27 7.80 8.31 -40.82 -0.34 7.46 16 29 H 0.12 1.89 6.07 -51.93 -0.32 1.57 16 30 H 0.11 2.15 6.73 -51.93 -0.35 1.80 16 31 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.09 1.06 8.13 -51.93 -0.42 0.64 16 33 H 0.10 1.66 8.14 -51.93 -0.42 1.23 16 34 H 0.14 2.69 7.86 -52.49 -0.41 2.27 16 LS Contribution 296.59 15.07 4.47 4.47 Total: -1.00 -32.06 296.59 -8.31 -40.37 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -3.75 Total: 0.55 kcal Atomic # 6 Polarization: -9.21 SS G_CDS: -3.22 Total: -12.43 kcal Atomic # 7 Polarization: -35.85 SS G_CDS: 0.50 Total: -35.34 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: 0.06 Total: -14.98 kcal Atomic # 14 Polarization: 24.49 SS G_CDS: -4.22 Total: 20.26 kcal Atomic # 35 Polarization: -0.74 SS G_CDS: -2.16 Total: -2.90 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -32.06 -8.31 -40.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266951310.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.168 kcal (2) G-P(sol) polarization free energy of solvation -32.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds