Wall clock time and date at job start Tue Mar 31 2020 13:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38380 * 119.85280 * 2 1 4 4 C 1.37914 * 120.16171 * 179.72189 * 3 2 1 5 5 C 1.39665 * 119.86755 * 0.48639 * 4 3 2 6 6 C 1.47734 * 120.14624 * 179.79215 * 5 4 3 7 7 O 1.21591 * 119.99925 * 154.04938 * 6 5 4 8 8 N 1.34776 * 119.99926 * 334.05095 * 6 5 4 9 9 C 1.36867 * 120.00094 * 174.34878 * 8 6 5 10 10 H 1.08010 * 119.99642 * 223.22283 * 9 8 6 11 11 C 1.39048 * 120.00623 * 43.21547 * 9 8 6 12 12 N 1.31359 * 120.00338 * 199.19656 * 11 9 8 13 13 Si 1.86799 * 119.99427 * 19.19688 * 11 9 8 14 14 H 1.48501 * 109.47185 * 267.79680 * 13 11 9 15 15 H 1.48498 * 109.47411 * 27.80121 * 13 11 9 16 16 H 1.48497 * 109.46881 * 147.80040 * 13 11 9 17 17 C 1.46503 * 119.99992 * 354.34053 * 8 6 5 18 18 C 1.52999 * 117.49855 * 184.26222 * 17 8 6 19 19 C 1.52994 * 117.49838 * 115.63739 * 17 8 6 20 20 C 1.39610 * 119.71114 * 359.51525 * 5 4 3 21 21 C 1.38059 * 119.83025 * 0.25244 * 20 5 4 22 22 Br 1.89097 * 119.93120 * 179.97438 * 21 20 5 23 23 H 1.08994 * 109.47451 * 270.01897 * 1 2 3 24 24 H 1.08995 * 109.46839 * 30.02581 * 1 2 3 25 25 H 1.09006 * 109.46849 * 150.02005 * 1 2 3 26 26 H 1.07998 * 119.91488 * 359.97438 * 3 2 1 27 27 H 1.08004 * 120.06944 * 180.27668 * 4 3 2 28 28 H 0.96999 * 119.99997 * 179.97438 * 12 11 9 29 29 H 1.08998 * 115.54902 * 329.96645 * 17 8 6 30 30 H 1.09001 * 117.49837 * 359.97438 * 18 17 8 31 31 H 1.09000 * 117.49834 * 145.02357 * 18 17 8 32 32 H 1.09000 * 117.49983 * 214.97749 * 19 17 8 33 33 H 1.09002 * 117.50019 * 359.97438 * 19 17 8 34 34 H 1.07996 * 120.08428 * 180.22833 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2002 0.0000 4 6 3.5750 1.2076 0.0058 5 6 4.2770 0.0003 0.0014 6 6 5.7544 0.0011 0.0029 7 8 6.3624 -0.9474 0.4603 8 7 6.4282 1.0531 -0.5027 9 6 7.7917 1.1071 -0.3974 10 1 8.2757 2.0322 -0.1207 11 6 8.5539 -0.0288 -0.6464 12 7 9.7858 -0.1050 -0.1966 13 14 7.8260 -1.4467 -1.6207 14 1 7.2106 -2.4242 -0.6874 15 1 6.7895 -0.9287 -2.5493 16 1 8.8995 -2.1145 -2.3998 17 6 5.7011 2.1389 -1.1651 18 6 6.5283 3.2552 -1.8057 19 6 5.7518 3.5228 -0.5148 20 6 3.5766 -1.2074 0.0014 21 6 2.1961 -1.2007 0.0005 22 35 1.2446 -2.8348 -0.0003 23 1 -0.3634 0.0003 1.0276 24 1 -0.3633 0.8897 -0.5142 25 1 -0.3633 -0.8902 -0.5136 26 1 1.6521 2.1333 -0.0004 27 1 4.1110 2.1452 0.0103 28 1 10.3173 -0.8976 -0.3700 29 1 4.7750 1.8498 -1.6619 30 1 7.6135 3.1820 -1.7339 31 1 6.1464 3.7008 -2.7243 32 1 4.8592 4.1445 -0.5842 33 1 6.3258 3.6254 0.4061 34 1 4.1134 -2.1445 0.0017 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266951310.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:00 Heat of formation + Delta-G solvation = 25.786765 kcal Electronic energy + Delta-G solvation = -19598.482545 eV Core-core repulsion = 16543.695688 eV Total energy + Delta-G solvation = -3054.786857 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 323.026 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.62086 -39.72513 -38.25390 -35.09046 -34.24979 -33.33280 -33.11094 -30.47859 -28.87391 -26.60309 -24.10066 -23.72575 -23.15260 -22.18869 -21.50772 -19.41307 -18.05424 -17.34831 -17.04893 -16.42058 -16.14708 -15.78130 -15.43126 -15.22752 -14.93490 -14.72183 -14.57268 -14.32409 -13.48845 -13.21420 -13.16787 -13.05684 -12.68534 -12.55258 -12.28819 -12.18713 -12.14648 -11.90057 -11.48292 -11.34494 -11.17096 -10.80255 -10.44968 -9.90879 -9.64260 -9.44108 -8.49165 -6.24559 -0.21829 0.09908 0.52685 1.18251 1.29233 1.46408 1.85795 2.36640 2.48068 2.65659 2.90582 3.14848 3.61632 3.73119 3.86270 3.97825 4.05283 4.18699 4.24655 4.29559 4.50358 4.66265 4.79763 4.84123 4.86407 4.92481 5.07195 5.20908 5.24183 5.30391 5.35547 5.44913 5.62846 5.73305 5.81513 6.66412 6.78911 7.23367 7.75220 8.58063 Molecular weight = 323.03amu Principal moments of inertia in cm(-1) A = 0.017811 B = 0.005265 C = 0.004254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.706620 B = 5317.202503 C = 6580.830347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.038 4.038 3 C -0.108 4.108 4 C -0.081 4.081 5 C -0.137 4.137 6 C 0.476 3.524 7 O -0.588 6.588 8 N -0.437 5.437 9 C -0.339 4.339 10 H 0.079 0.921 11 C 0.048 3.952 12 N -0.903 5.903 13 Si 0.959 3.041 14 H -0.274 1.274 15 H -0.273 1.273 16 H -0.303 1.303 17 C 0.027 3.973 18 C -0.170 4.170 19 C -0.173 4.173 20 C -0.063 4.063 21 C -0.111 4.111 22 Br -0.040 7.040 23 H 0.092 0.908 24 H 0.102 0.898 25 H 0.074 0.926 26 H 0.183 0.817 27 H 0.166 0.834 28 H 0.274 0.726 29 H 0.143 0.857 30 H 0.078 0.922 31 H 0.130 0.870 32 H 0.145 0.855 33 H 0.076 0.924 34 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.385 4.259 -2.817 24.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.041 4.041 3 C -0.126 4.126 4 C -0.100 4.100 5 C -0.141 4.141 6 C 0.269 3.731 7 O -0.475 6.475 8 N -0.155 5.155 9 C -0.465 4.465 10 H 0.097 0.903 11 C -0.157 4.157 12 N -0.540 5.540 13 Si 0.790 3.210 14 H -0.201 1.201 15 H -0.198 1.198 16 H -0.233 1.233 17 C -0.077 4.077 18 C -0.207 4.207 19 C -0.211 4.211 20 C -0.084 4.084 21 C -0.190 4.190 22 Br 0.046 6.954 23 H 0.110 0.890 24 H 0.120 0.880 25 H 0.093 0.907 26 H 0.201 0.799 27 H 0.183 0.817 28 H 0.083 0.917 29 H 0.160 0.840 30 H 0.096 0.904 31 H 0.148 0.852 32 H 0.163 0.837 33 H 0.094 0.906 34 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -24.239 3.120 -2.585 24.575 hybrid contribution 1.275 -0.950 -0.130 1.595 sum -22.964 2.170 -2.715 23.226 Atomic orbital electron populations 1.21118 0.87407 1.05068 1.04356 1.20426 0.98477 0.90698 0.94469 1.21460 0.92570 0.98789 0.99775 1.22396 0.95576 0.97752 0.94248 1.19971 0.92026 0.95419 1.06678 1.18955 0.88017 0.84708 0.81386 1.90592 1.69948 1.35946 1.51027 1.43102 1.05390 1.18612 1.48418 1.18610 0.80175 0.98768 1.48997 0.90346 1.25919 0.94730 1.00102 0.94924 1.69781 1.11131 1.30426 1.42685 0.85618 0.77217 0.81331 0.76851 1.20120 1.19816 1.23269 1.22457 0.98829 0.83892 1.02491 1.23310 0.99210 1.00241 0.97982 1.23487 1.03870 0.97045 0.96684 1.21056 0.93012 0.97719 0.96581 1.21691 0.93208 0.92964 1.11143 1.96620 1.73905 1.27134 1.97759 0.89001 0.87977 0.90703 0.79944 0.81722 0.91671 0.84021 0.90354 0.85206 0.83730 0.90571 0.87216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.63 9.54 71.24 0.68 -0.95 16 2 C -0.04 -0.81 5.89 -19.78 -0.12 -0.93 16 3 C -0.11 -2.10 9.68 22.23 0.22 -1.88 16 4 C -0.08 -2.24 7.63 22.54 0.17 -2.07 16 5 C -0.14 -5.28 5.54 -20.09 -0.11 -5.39 16 6 C 0.48 23.86 5.92 86.75 0.51 24.37 16 7 O -0.59 -35.03 11.57 -4.00 -0.05 -35.08 16 8 N -0.44 -21.08 2.48 -616.50 -1.53 -22.61 16 9 C -0.34 -19.37 8.44 84.10 0.71 -18.66 16 10 H 0.08 4.68 7.41 -2.91 -0.02 4.66 16 11 C 0.05 2.97 4.87 84.96 0.41 3.38 16 12 N -0.90 -57.45 13.95 21.68 0.30 -57.15 16 13 Si 0.96 53.28 24.85 68.60 1.70 54.98 16 14 H -0.27 -16.26 6.06 99.48 0.60 -15.66 16 15 H -0.27 -14.44 7.11 99.48 0.71 -13.73 16 16 H -0.30 -16.19 7.11 99.48 0.71 -15.49 16 17 C 0.03 0.93 4.22 44.99 0.19 1.12 16 18 C -0.17 -5.20 9.80 30.59 0.30 -4.90 16 19 C -0.17 -4.63 8.96 30.59 0.27 -4.35 16 20 C -0.06 -2.30 9.33 22.56 0.21 -2.09 16 21 C -0.11 -3.13 6.21 22.27 0.14 -2.99 16 22 Br -0.04 -0.97 31.76 -20.37 -0.65 -1.61 16 23 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.10 0.81 8.08 -2.39 -0.02 0.80 16 25 H 0.07 1.06 6.62 -2.38 -0.02 1.04 16 26 H 0.18 1.81 8.06 -2.91 -0.02 1.79 16 27 H 0.17 4.10 4.00 -2.91 -0.01 4.09 16 28 H 0.27 16.52 8.31 -92.71 -0.77 15.75 16 29 H 0.14 4.11 6.07 -2.39 -0.01 4.10 16 30 H 0.08 2.99 6.73 -2.39 -0.02 2.97 16 31 H 0.13 2.92 8.14 -2.39 -0.02 2.90 16 32 H 0.14 2.39 8.13 -2.39 -0.02 2.37 16 33 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 34 H 0.11 4.55 7.86 -2.91 -0.02 4.52 16 Total: -1.00 -77.65 296.59 4.40 -73.26 By element: Atomic # 1 Polarization: 2.54 SS G_CDS: 1.02 Total: 3.56 kcal Atomic # 6 Polarization: -18.93 SS G_CDS: 3.59 Total: -15.34 kcal Atomic # 7 Polarization: -78.54 SS G_CDS: -1.23 Total: -79.76 kcal Atomic # 8 Polarization: -35.03 SS G_CDS: -0.05 Total: -35.08 kcal Atomic # 14 Polarization: 53.28 SS G_CDS: 1.70 Total: 54.98 kcal Atomic # 35 Polarization: -0.97 SS G_CDS: -0.65 Total: -1.61 kcal Total: -77.65 4.40 -73.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266951310.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.043 kcal (2) G-P(sol) polarization free energy of solvation -77.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds