Wall clock time and date at job start Tue Mar 31 2020 13:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86793 * 120.00018 * 2 1 4 4 H 1.48498 * 109.47115 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47666 * 300.00424 * 3 2 1 6 6 H 1.48508 * 109.46893 * 60.00533 * 3 2 1 7 7 C 1.37878 * 119.99740 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99921 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99998 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47221 * 180.02562 * 9 7 2 11 11 C 1.50694 * 109.47221 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00546 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00009 * 179.97438 * 11 10 9 14 14 C 1.46634 * 126.56936 * 179.97438 * 13 11 10 15 15 C 1.50776 * 107.70620 * 180.02562 * 14 13 11 16 16 C 1.38455 * 131.19804 * 180.02562 * 15 14 13 17 17 C 1.38146 * 120.12438 * 180.02562 * 16 15 14 18 18 C 1.38235 * 119.97516 * 359.97438 * 17 16 15 19 19 C 1.38240 * 119.95337 * 359.97438 * 18 17 16 20 20 Br 1.89099 * 119.96319 * 179.97438 * 19 18 17 21 21 C 1.38054 * 108.86102 * 359.97438 * 15 14 13 22 22 C 1.46646 * 126.56322 * 0.02949 * 13 11 10 23 23 H 0.97003 * 119.99701 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47333 * 60.00279 * 9 7 2 25 25 H 1.08998 * 109.47588 * 300.00432 * 9 7 2 26 26 H 1.09002 * 109.46838 * 59.99854 * 10 9 7 27 27 H 1.09007 * 109.46946 * 300.00336 * 10 9 7 28 28 H 1.08998 * 109.80989 * 60.47472 * 14 13 11 29 29 H 1.09003 * 109.86734 * 299.60775 * 14 13 11 30 30 H 1.08001 * 119.93678 * 359.97438 * 16 15 14 31 31 H 1.07998 * 120.01236 * 179.97438 * 17 16 15 32 32 H 1.08002 * 120.02986 * 179.73006 * 18 17 16 33 33 H 1.08999 * 109.80701 * 299.52213 * 22 13 11 34 34 H 1.08992 * 109.81115 * 60.36047 * 22 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4917 -4.9671 0.0001 12 8 0.2789 -4.9672 0.0000 13 7 2.1655 -6.1344 -0.0003 14 6 1.5824 -7.4798 0.0007 15 6 2.7179 -8.4717 0.0004 16 6 2.7193 -9.8563 0.0006 17 6 3.9149 -10.5484 0.0007 18 6 5.1125 -9.8581 0.0001 19 6 5.1124 -8.4757 -0.0011 20 35 6.7506 -7.5311 -0.0012 21 6 3.9135 -7.7815 -0.0014 22 6 3.6224 -6.3021 -0.0008 23 1 -0.4850 0.8401 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6246 -2.5571 0.8896 26 1 2.8719 -3.6044 0.8895 27 1 2.8720 -3.6044 -0.8905 28 1 0.9708 -7.6180 -0.8909 29 1 0.9714 -7.6180 0.8927 30 1 1.7840 -10.3962 0.0015 31 1 3.9139 -11.6284 0.0013 32 1 6.0478 -10.3982 0.0046 33 1 4.0468 -5.8421 -0.8931 34 1 4.0476 -5.8407 0.8905 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291951422.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:59 Heat of formation + Delta-G solvation = -6.699615 kcal Electronic energy + Delta-G solvation = -18407.982640 eV Core-core repulsion = 15351.787068 eV Total energy + Delta-G solvation = -3056.195572 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 323.026 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.86345 -38.82014 -36.19791 -33.50659 -32.95948 -31.57846 -30.70593 -29.96532 -27.91165 -26.24187 -24.74963 -21.93754 -21.75194 -21.20387 -18.95268 -17.12755 -16.55293 -16.24905 -16.05429 -15.78983 -15.01389 -14.49344 -14.31575 -14.28955 -13.56267 -13.23910 -13.22753 -12.94093 -12.53583 -12.16681 -12.12168 -11.84334 -11.32673 -11.14532 -11.09083 -10.94581 -10.58296 -10.51929 -9.98265 -9.70462 -9.37963 -9.28083 -9.06603 -9.00886 -8.37881 -8.31608 -5.96497 -4.00820 0.69140 0.82609 1.31253 3.01347 3.10796 3.15536 3.33037 3.40293 3.43762 3.89624 4.16794 4.47258 4.54475 4.81320 4.91403 5.06865 5.17352 5.32356 5.38732 5.41204 5.47131 5.51136 5.61819 5.73051 5.92207 5.97518 6.17214 6.19371 6.35653 6.39688 6.84151 7.68651 7.73971 7.83881 8.05774 8.36335 8.61092 9.07328 9.62852 11.14523 Molecular weight = 323.03amu Principal moments of inertia in cm(-1) A = 0.017541 B = 0.003337 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.866736 B = 8389.572666 C = 9954.344998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.526 4.526 8 H 0.057 0.943 9 C 0.036 3.964 10 C -0.124 4.124 11 C 0.535 3.465 12 O -0.524 6.524 13 N -0.627 5.627 14 C 0.148 3.852 15 C -0.093 4.093 16 C -0.082 4.082 17 C -0.111 4.111 18 C -0.090 4.090 19 C -0.069 4.069 20 Br -0.046 7.046 21 C -0.076 4.076 22 C 0.146 3.854 23 H 0.260 0.740 24 H 0.025 0.975 25 H 0.024 0.976 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.133 0.867 31 H 0.137 0.863 32 H 0.137 0.863 33 H 0.090 0.910 34 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.061 -24.286 0.004 28.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.564 4.564 8 H 0.075 0.925 9 C -0.002 4.002 10 C -0.164 4.164 11 C 0.327 3.673 12 O -0.398 6.398 13 N -0.365 5.365 14 C 0.025 3.975 15 C -0.095 4.095 16 C -0.101 4.101 17 C -0.130 4.130 18 C -0.110 4.110 19 C -0.148 4.148 20 Br 0.040 6.960 21 C -0.079 4.079 22 C 0.023 3.977 23 H 0.070 0.930 24 H 0.043 0.957 25 H 0.043 0.957 26 H 0.100 0.900 27 H 0.100 0.900 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.151 0.849 31 H 0.155 0.845 32 H 0.155 0.845 33 H 0.108 0.892 34 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 13.780 -23.664 0.004 27.384 hybrid contribution 0.210 0.546 0.001 0.585 sum 13.990 -23.117 0.005 27.021 Atomic orbital electron populations 1.70013 1.06057 1.26496 1.50251 1.25025 0.94830 0.99254 0.95280 0.86530 0.80033 0.83788 0.77587 1.19708 1.21007 1.21013 1.21236 0.92997 0.90884 1.51320 0.92472 1.18937 0.93163 0.89317 0.98736 1.21900 1.00751 0.91015 1.02711 1.21341 0.88064 0.83674 0.74212 1.90697 1.14042 1.86510 1.48560 1.48279 1.06180 1.05395 1.76666 1.20160 0.93487 0.80727 1.03136 1.20459 0.94824 0.94112 1.00068 1.20647 0.99008 0.91975 0.98448 1.21080 0.91401 1.00278 1.00196 1.21055 0.99396 0.91482 0.99056 1.21162 0.90602 0.94418 1.08657 1.96772 1.26197 1.75443 1.97570 1.20162 0.92323 0.96188 0.99217 1.20294 0.82637 0.91172 1.03627 0.92991 0.95709 0.95717 0.89999 0.89990 0.89892 0.89888 0.84925 0.84539 0.84508 0.89245 0.89227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.41 13.29 55.43 0.74 -26.68 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.53 -14.92 9.11 -34.44 -0.31 -15.23 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 9 C 0.04 0.97 4.26 -27.88 -0.12 0.85 16 10 C -0.12 -2.55 4.89 -27.88 -0.14 -2.69 16 11 C 0.54 10.64 7.87 -10.99 -0.09 10.55 16 12 O -0.52 -12.49 16.36 5.56 0.09 -12.40 16 13 N -0.63 -9.74 3.34 -176.12 -0.59 -10.33 16 14 C 0.15 1.92 6.91 -5.08 -0.04 1.88 16 15 C -0.09 -1.01 6.22 -104.57 -0.65 -1.66 16 16 C -0.08 -0.67 10.04 -39.54 -0.40 -1.07 16 17 C -0.11 -0.78 10.04 -39.62 -0.40 -1.18 16 18 C -0.09 -0.72 9.78 -39.58 -0.39 -1.11 16 19 C -0.07 -0.68 6.23 -39.47 -0.25 -0.93 16 20 Br -0.05 -0.44 33.43 -68.01 -2.27 -2.71 16 21 C -0.08 -0.86 6.10 -104.54 -0.64 -1.50 16 22 C 0.15 1.85 6.20 -5.08 -0.03 1.81 16 23 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 24 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 25 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 26 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 27 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 28 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 31 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 32 H 0.14 0.82 8.06 -52.49 -0.42 0.39 16 33 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 315.66 15.07 4.76 4.76 Total: -1.00 -33.56 315.66 -10.02 -43.58 By element: Atomic # 1 Polarization: -0.02 SS G_CDS: -4.19 Total: -4.21 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: -3.54 Total: -8.68 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: 0.15 Total: -37.01 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: 0.09 Total: -12.40 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 35 Polarization: -0.44 SS G_CDS: -2.27 Total: -2.71 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -33.56 -10.02 -43.58 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291951422.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.883 kcal (2) G-P(sol) polarization free energy of solvation -33.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds