Wall clock time and date at job start Tue Mar 31 2020 14:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50700 * 119.99918 * 2 1 4 4 N 1.46502 * 109.47535 * 124.99449 * 3 2 1 5 5 C 1.46501 * 120.00072 * 274.65307 * 4 3 2 6 6 C 1.50699 * 109.46874 * 269.99547 * 5 4 3 7 7 H 1.08000 * 119.99873 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99955 * 179.97438 * 6 5 4 9 9 N 1.31512 * 119.99708 * 0.02562 * 8 6 5 10 10 Si 1.86791 * 119.99902 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47509 * 0.02562 * 10 8 6 12 12 H 1.48510 * 109.47016 * 120.00290 * 10 8 6 13 13 H 1.48506 * 109.47528 * 240.00013 * 10 8 6 14 14 C 1.34779 * 119.99720 * 94.64736 * 4 3 2 15 15 O 1.21555 * 120.00412 * 4.97739 * 14 4 3 16 16 C 1.47787 * 119.99656 * 184.97505 * 14 4 3 17 17 C 1.39625 * 120.15277 * 303.12606 * 16 14 4 18 18 C 1.37905 * 119.86074 * 179.97438 * 17 16 14 19 19 C 1.38410 * 120.17516 * 0.02562 * 18 17 16 20 20 C 1.38285 * 120.31487 * 359.97438 * 19 18 17 21 21 C 1.38114 * 120.12917 * 0.02562 * 20 19 18 22 22 Br 1.89098 * 120.08584 * 180.02562 * 21 20 19 23 23 H 1.07996 * 119.99793 * 0.02562 * 1 2 3 24 24 H 1.07992 * 120.00108 * 180.02562 * 1 2 3 25 25 H 1.07996 * 120.00537 * 179.97438 * 2 1 3 26 26 H 1.08997 * 109.47572 * 4.99257 * 3 2 1 27 27 H 1.08998 * 109.47165 * 244.99625 * 3 2 1 28 28 H 1.08998 * 109.46782 * 29.99291 * 5 4 3 29 29 H 1.08998 * 109.46855 * 149.99532 * 5 4 3 30 30 H 0.97000 * 119.99934 * 180.02562 * 9 8 6 31 31 H 1.08001 * 120.06863 * 0.26048 * 17 16 14 32 32 H 1.08005 * 119.90698 * 179.97438 * 18 17 16 33 33 H 1.07996 * 119.84221 * 179.97438 * 19 18 17 34 34 H 1.07998 * 119.93438 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3321 1.1315 5 6 2.5302 1.7696 2.4506 6 6 2.7227 3.2585 2.5822 7 1 3.1473 3.8224 1.7648 8 6 2.3556 3.9009 3.7456 9 7 1.8380 3.2142 4.7407 10 14 2.5948 5.7462 3.9090 11 1 3.1916 6.2807 2.6586 12 1 1.2811 6.3965 4.1474 13 1 3.5014 6.0288 5.0508 14 6 4.2759 0.9542 0.9589 15 8 4.6838 0.6778 -0.1523 16 6 5.1859 0.8759 2.1207 17 6 5.3928 1.9974 2.9263 18 6 6.2429 1.9175 4.0093 19 6 6.8911 0.7293 4.2987 20 6 6.6915 -0.3859 3.5056 21 6 5.8429 -0.3201 2.4179 22 35 5.5703 -1.8460 1.3347 23 1 -0.5399 0.9353 -0.0004 24 1 -0.5400 -0.9352 0.0004 25 1 1.8501 -0.9352 0.0004 26 1 1.3586 2.1317 0.0894 27 1 2.6213 1.4026 -0.9313 28 1 1.4731 1.5286 2.5625 29 1 3.1033 1.2593 3.2247 30 1 1.5795 3.6662 5.5591 31 1 4.8846 2.9242 2.7045 32 1 6.4038 2.7846 4.6327 33 1 7.5560 0.6728 5.1478 34 1 7.2001 -1.3100 3.7373 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359435310.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:48 Heat of formation + Delta-G solvation = 17.174601 kcal Electronic energy + Delta-G solvation = -19540.222625 eV Core-core repulsion = 16485.062316 eV Total energy + Delta-G solvation = -3055.160308 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 323.026 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.75502 -37.88199 -35.49739 -33.57451 -32.24060 -31.96144 -30.72810 -28.87794 -27.58800 -25.80236 -23.33641 -22.57569 -21.85226 -19.82800 -18.76505 -16.88872 -16.59325 -15.92791 -15.58777 -15.07497 -14.67661 -14.50391 -14.03865 -13.72681 -13.13681 -12.93495 -12.68526 -12.49354 -12.28870 -11.68136 -11.44540 -11.34447 -11.04396 -10.90552 -10.86043 -10.74975 -10.46798 -10.27814 -9.96987 -9.76920 -9.26600 -8.93383 -8.69274 -8.45873 -8.35163 -7.78483 -6.27016 -4.34544 1.30156 1.61812 1.95079 2.57310 3.13849 3.23946 3.26351 3.34297 3.88508 4.11816 4.26583 5.03218 5.06467 5.15994 5.38235 5.39372 5.54695 5.58819 5.79045 5.89464 5.98376 6.18944 6.29675 6.34983 6.48157 6.69207 6.71165 6.82962 6.94560 7.06434 7.16981 7.21039 7.50021 7.66921 7.97118 8.23846 8.69158 8.91112 9.31302 10.78923 Molecular weight = 323.03amu Principal moments of inertia in cm(-1) A = 0.013120 B = 0.006660 C = 0.004857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.575878 B = 4203.347601 C = 5763.159094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.155 4.155 3 C 0.143 3.857 4 N -0.583 5.583 5 C 0.235 3.765 6 C -0.542 4.542 7 H 0.064 0.936 8 C 0.069 3.931 9 N -0.881 5.881 10 Si 0.890 3.110 11 H -0.270 1.270 12 H -0.281 1.281 13 H -0.281 1.281 14 C 0.557 3.443 15 O -0.549 6.549 16 C -0.089 4.089 17 C -0.057 4.057 18 C -0.113 4.113 19 C -0.105 4.105 20 C -0.112 4.112 21 C -0.056 4.056 22 Br -0.051 7.051 23 H 0.097 0.903 24 H 0.093 0.907 25 H 0.104 0.896 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.037 0.963 29 H 0.040 0.960 30 H 0.266 0.734 31 H 0.167 0.833 32 H 0.129 0.871 33 H 0.127 0.873 34 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.844 -7.035 -1.987 9.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.174 4.174 3 C 0.020 3.980 4 N -0.313 5.313 5 C 0.115 3.885 6 C -0.580 4.580 7 H 0.082 0.918 8 C -0.135 4.135 9 N -0.518 5.518 10 Si 0.717 3.283 11 H -0.195 1.195 12 H -0.207 1.207 13 H -0.206 1.206 14 C 0.344 3.656 15 O -0.429 6.429 16 C -0.094 4.094 17 C -0.076 4.076 18 C -0.131 4.131 19 C -0.124 4.124 20 C -0.132 4.132 21 C -0.136 4.136 22 Br 0.035 6.965 23 H 0.116 0.884 24 H 0.111 0.889 25 H 0.122 0.878 26 H 0.101 0.899 27 H 0.103 0.897 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.076 0.924 31 H 0.184 0.816 32 H 0.147 0.853 33 H 0.145 0.855 34 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 5.844 -7.727 -2.780 10.079 hybrid contribution -0.043 1.304 0.748 1.504 sum 5.801 -6.423 -2.032 8.890 Atomic orbital electron populations 1.23756 0.95749 1.01541 1.01838 1.23369 0.96092 0.99256 0.98724 1.20442 0.92170 0.94828 0.90575 1.48111 1.08048 1.62596 1.12510 1.19511 0.96396 0.94935 0.77643 1.21492 1.42966 0.92714 1.00837 0.91769 1.24932 0.94620 0.98403 0.95531 1.69939 1.40844 1.35951 1.05088 0.86558 0.78240 0.85100 0.78393 1.19465 1.20719 1.20644 1.18135 0.82362 0.77232 0.87870 1.90713 1.76260 1.51028 1.24888 1.19816 0.98684 0.93623 0.97308 1.22185 0.93806 0.99799 0.91769 1.21253 0.96443 0.98019 0.97405 1.21216 0.99523 0.92677 0.98980 1.20876 0.98539 0.99417 0.94323 1.21718 1.01887 0.92282 0.97749 1.96649 1.96445 1.35162 1.68245 0.88443 0.88907 0.87795 0.89863 0.89657 0.94451 0.94162 0.92434 0.81576 0.85314 0.85531 0.85285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.81 14.32 29.01 0.42 -2.40 16 2 C -0.16 -2.61 9.84 -36.03 -0.35 -2.97 16 3 C 0.14 2.66 5.93 -5.19 -0.03 2.63 16 4 N -0.58 -12.40 2.44 -177.57 -0.43 -12.83 16 5 C 0.23 5.49 4.73 -5.19 -0.02 5.46 16 6 C -0.54 -13.21 6.58 -34.44 -0.23 -13.44 16 7 H 0.06 1.59 7.76 -52.49 -0.41 1.18 16 8 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 9 N -0.88 -23.14 13.29 55.43 0.74 -22.41 16 10 Si 0.89 19.34 29.54 -169.99 -5.02 14.31 16 11 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 12 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 13 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 14 C 0.56 12.04 6.42 -12.35 -0.08 11.96 16 15 O -0.55 -12.59 15.57 5.32 0.08 -12.51 16 16 C -0.09 -1.80 4.61 -104.94 -0.48 -2.29 16 17 C -0.06 -1.10 7.82 -39.19 -0.31 -1.41 16 18 C -0.11 -1.84 10.03 -39.64 -0.40 -2.24 16 19 C -0.10 -1.50 10.04 -39.50 -0.40 -1.90 16 20 C -0.11 -1.70 9.78 -39.61 -0.39 -2.08 16 21 C -0.06 -1.02 6.25 -39.09 -0.24 -1.26 16 22 Br -0.05 -0.86 31.92 -68.01 -2.17 -3.03 16 23 H 0.10 1.38 7.84 -52.49 -0.41 0.97 16 24 H 0.09 1.19 8.06 -52.49 -0.42 0.77 16 25 H 0.10 1.79 8.06 -52.49 -0.42 1.37 16 26 H 0.08 1.51 7.76 -51.93 -0.40 1.11 16 27 H 0.09 1.59 7.23 -51.93 -0.38 1.22 16 28 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 29 H 0.04 1.00 6.16 -51.93 -0.32 0.68 16 30 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 31 H 0.17 3.51 5.25 -52.49 -0.28 3.23 16 32 H 0.13 1.84 8.06 -52.48 -0.42 1.41 16 33 H 0.13 1.38 8.06 -52.49 -0.42 0.95 16 34 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 314.56 15.07 4.74 4.74 Total: -1.00 -27.42 314.56 -8.54 -35.96 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -3.86 Total: 4.06 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: -2.61 Total: -8.30 kcal Atomic # 7 Polarization: -35.54 SS G_CDS: 0.30 Total: -35.24 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: 0.08 Total: -12.51 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.02 Total: 14.31 kcal Atomic # 35 Polarization: -0.86 SS G_CDS: -2.17 Total: -3.03 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -27.42 -8.54 -35.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359435310.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.135 kcal (2) G-P(sol) polarization free energy of solvation -27.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds