Wall clock time and date at job start Tue Mar 31 2020 13:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 119.99886 * 2 1 4 4 H 1.48501 * 109.47349 * 270.00304 * 3 2 1 5 5 H 1.48506 * 109.47013 * 30.00421 * 3 2 1 6 6 H 1.48501 * 109.47154 * 150.00244 * 3 2 1 7 7 C 1.37875 * 119.99914 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00433 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47276 * 180.02562 * 9 7 2 11 11 N 1.46903 * 109.47042 * 179.97438 * 10 9 7 12 12 C 1.46902 * 111.00019 * 179.97438 * 11 10 9 13 13 C 1.50696 * 109.47024 * 179.97438 * 12 11 10 14 14 C 1.34003 * 124.92198 * 90.54665 * 13 12 11 15 15 C 1.46781 * 106.18571 * 180.02562 * 14 13 12 16 16 C 1.39426 * 134.33019 * 179.34322 * 15 14 13 17 17 C 1.37803 * 119.59129 * 179.97438 * 16 15 14 18 18 Br 1.89105 * 119.87083 * 179.97438 * 17 16 15 19 19 C 1.38842 * 120.25349 * 0.02796 * 17 16 15 20 20 C 1.37810 * 120.68340 * 359.97438 * 19 17 16 21 21 C 1.38920 * 119.97099 * 0.23888 * 20 19 17 22 22 O 1.34443 * 124.92726 * 269.97521 * 13 12 11 23 23 H 0.96996 * 120.00310 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47345 * 59.99155 * 9 7 2 25 25 H 1.09005 * 109.46799 * 300.00015 * 9 7 2 26 26 H 1.08997 * 109.47940 * 59.99746 * 10 9 7 27 27 H 1.09002 * 109.47378 * 299.99263 * 10 9 7 28 28 H 1.00894 * 111.00287 * 303.95226 * 11 10 9 29 29 H 1.09003 * 109.47054 * 60.00024 * 12 11 10 30 30 H 1.09002 * 109.47526 * 300.00554 * 12 11 10 31 31 H 1.08007 * 126.90536 * 359.42800 * 14 13 12 32 32 H 1.08001 * 120.20416 * 0.02562 * 16 15 14 33 33 H 1.08003 * 119.65720 * 179.97438 * 19 17 16 34 34 H 1.08002 * 120.01042 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.2453 -3.6620 -0.0015 11 7 1.5109 -4.9342 -0.0020 12 6 2.4354 -6.0759 -0.0024 13 6 1.6473 -7.3604 -0.0023 14 6 1.2548 -8.0196 -1.1009 15 6 0.5237 -9.2018 -0.6293 16 6 -0.1314 -10.2583 -1.2608 17 6 -0.7351 -11.2364 -0.5006 18 35 -1.6263 -12.6724 -1.3489 19 6 -0.6924 -11.1709 0.8856 20 6 -0.0480 -10.1316 1.5210 21 6 0.5631 -9.1331 0.7732 22 8 1.2456 -8.0168 1.1001 23 1 -0.4850 0.8400 0.0004 24 1 0.6247 -2.5563 -0.8919 25 1 0.6241 -2.5575 0.8881 26 1 2.8714 -3.6048 0.8889 27 1 2.8726 -3.6040 -0.8910 28 1 0.8741 -4.9845 0.7791 29 1 3.0633 -6.0352 0.8877 30 1 3.0635 -6.0345 -0.8922 31 1 1.4316 -7.7330 -2.1271 32 1 -0.1647 -10.3101 -2.3390 33 1 -1.1691 -11.9425 1.4719 34 1 -0.0218 -10.0913 2.6000 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566926137.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:56 Heat of formation + Delta-G solvation = 22.224759 kcal Electronic energy + Delta-G solvation = -17744.264802 eV Core-core repulsion = 14689.323485 eV Total energy + Delta-G solvation = -3054.941317 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 323.026 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.65238 -38.29439 -36.23099 -33.41196 -32.78840 -32.21728 -30.77456 -29.41020 -28.62349 -25.77298 -23.63294 -22.83169 -21.98042 -21.18859 -20.61273 -17.65362 -16.82220 -16.51974 -16.19806 -16.01578 -15.26365 -14.57799 -14.43673 -14.21546 -13.98955 -13.38694 -13.13194 -13.11769 -12.56471 -12.29596 -12.22018 -11.98615 -11.36458 -11.13641 -10.95915 -10.92640 -10.61953 -10.58940 -10.36994 -10.08978 -9.50486 -9.21860 -8.73892 -8.41760 -8.37992 -8.02831 -6.03440 -4.06715 0.58618 0.83275 1.29626 2.17029 2.48708 3.27504 3.29997 3.36278 3.39017 4.11024 4.35619 4.41288 4.70020 4.76432 4.83711 4.93356 4.97256 5.28358 5.32595 5.35206 5.54024 5.55807 5.75626 5.80931 5.91413 6.17594 6.19809 6.23864 6.26510 6.85851 6.97624 7.25719 7.61535 7.68817 7.82570 8.01056 8.36889 9.00333 9.57406 11.07941 Molecular weight = 323.03amu Principal moments of inertia in cm(-1) A = 0.037009 B = 0.001946 C = 0.001911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.396998 B =14383.678769 C =14645.305052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.025 3.975 10 C 0.065 3.935 11 N -0.687 5.687 12 C 0.130 3.870 13 C 0.053 3.947 14 C -0.188 4.188 15 C -0.122 4.122 16 C -0.038 4.038 17 C -0.110 4.110 18 Br -0.049 7.049 19 C -0.074 4.074 20 C -0.098 4.098 21 C 0.066 3.934 22 O -0.190 6.190 23 H 0.261 0.739 24 H 0.027 0.973 25 H 0.015 0.985 26 H 0.021 0.979 27 H 0.063 0.937 28 H 0.342 0.658 29 H 0.048 0.952 30 H 0.106 0.894 31 H 0.163 0.837 32 H 0.138 0.862 33 H 0.143 0.857 34 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.104 -28.466 -0.631 28.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.062 4.062 11 N -0.319 5.319 12 C 0.001 3.999 13 C 0.005 3.995 14 C -0.208 4.208 15 C -0.124 4.124 16 C -0.058 4.058 17 C -0.189 4.189 18 Br 0.036 6.964 19 C -0.094 4.094 20 C -0.117 4.117 21 C 0.018 3.982 22 O -0.091 6.091 23 H 0.071 0.929 24 H 0.045 0.955 25 H 0.033 0.967 26 H 0.039 0.961 27 H 0.082 0.918 28 H 0.160 0.840 29 H 0.066 0.934 30 H 0.124 0.876 31 H 0.181 0.819 32 H 0.156 0.844 33 H 0.161 0.839 34 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.610 -28.789 -1.354 28.866 hybrid contribution 0.855 1.271 0.952 1.803 sum -0.755 -27.519 -0.401 27.532 Atomic orbital electron populations 1.69971 1.06057 1.26702 1.50410 1.25011 0.94856 0.99291 0.95223 0.86568 0.79763 0.83354 0.78144 1.20589 1.21202 1.19907 1.21146 0.92993 0.90890 1.51193 0.92659 1.19075 0.93993 0.90265 0.97924 1.22237 0.97175 0.87686 0.99113 1.60711 1.19309 1.01512 1.50336 1.20571 0.92639 0.83893 1.02809 1.22531 0.98736 0.94970 0.83232 1.22233 1.03919 0.94727 0.99928 1.19912 1.02267 0.97183 0.93058 1.20437 0.94388 0.90929 1.00094 1.21492 1.05644 0.96885 0.94898 1.96712 1.76817 1.42924 1.79946 1.20783 0.98423 0.97874 0.92276 1.19882 0.99584 0.92109 1.00125 1.19694 0.96591 0.88464 0.93493 1.84009 1.59238 1.31266 1.34613 0.92913 0.95498 0.96696 0.96117 0.91840 0.84001 0.93405 0.87642 0.81907 0.84426 0.83935 0.84160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.73 13.29 55.43 0.74 -25.99 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.52 -14.59 9.11 -34.44 -0.31 -14.91 16 8 H 0.06 1.48 7.74 -52.48 -0.41 1.08 16 9 C 0.02 0.63 5.23 -27.89 -0.15 0.49 16 10 C 0.07 1.30 5.62 -3.83 -0.02 1.28 16 11 N -0.69 -11.74 6.49 -115.06 -0.75 -12.49 16 12 C 0.13 1.75 6.19 -4.98 -0.03 1.72 16 13 C 0.05 0.71 6.74 -35.80 -0.24 0.47 16 14 C -0.19 -2.37 11.01 -37.62 -0.41 -2.78 16 15 C -0.12 -1.52 6.40 -105.16 -0.67 -2.20 16 16 C -0.04 -0.41 9.83 -39.30 -0.39 -0.80 16 17 C -0.11 -1.09 6.22 -39.52 -0.25 -1.33 16 18 Br -0.05 -0.43 33.69 -68.01 -2.29 -2.72 16 19 C -0.07 -0.67 9.75 -39.51 -0.39 -1.05 16 20 C -0.10 -0.98 10.06 -39.49 -0.40 -1.38 16 21 C 0.07 0.84 7.41 -38.49 -0.29 0.55 16 22 O -0.19 -2.65 10.58 3.80 0.04 -2.61 16 23 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 24 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 28 H 0.34 5.88 8.72 -39.30 -0.34 5.54 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.16 1.76 8.06 -52.48 -0.42 1.34 16 32 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 33 H 0.14 0.93 8.06 -52.48 -0.42 0.51 16 34 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 319.79 15.07 4.82 4.82 Total: -1.00 -30.28 319.79 -10.21 -40.50 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -4.11 Total: 0.48 kcal Atomic # 6 Polarization: -14.75 SS G_CDS: -3.64 Total: -18.39 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: -0.01 Total: -38.47 kcal Atomic # 8 Polarization: -2.65 SS G_CDS: 0.04 Total: -2.61 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 35 Polarization: -0.43 SS G_CDS: -2.29 Total: -2.72 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.28 -10.21 -40.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566926137.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.721 kcal (2) G-P(sol) polarization free energy of solvation -30.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds