Wall clock time and date at job start Tue Mar 31 2020 13:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 119.99886 * 2 1 4 4 H 1.48501 * 109.47349 * 270.00304 * 3 2 1 5 5 H 1.48506 * 109.47013 * 30.00421 * 3 2 1 6 6 H 1.48501 * 109.47154 * 150.00244 * 3 2 1 7 7 C 1.37875 * 119.99914 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00433 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47276 * 180.02562 * 9 7 2 11 11 N 1.46903 * 109.47042 * 179.97438 * 10 9 7 12 12 C 1.46902 * 111.00019 * 179.97438 * 11 10 9 13 13 C 1.50696 * 109.47024 * 179.97438 * 12 11 10 14 14 C 1.34003 * 124.92198 * 90.54665 * 13 12 11 15 15 C 1.46781 * 106.18571 * 180.02562 * 14 13 12 16 16 C 1.39426 * 134.33019 * 179.34322 * 15 14 13 17 17 C 1.37803 * 119.59129 * 179.97438 * 16 15 14 18 18 Br 1.89105 * 119.87083 * 179.97438 * 17 16 15 19 19 C 1.38842 * 120.25349 * 0.02796 * 17 16 15 20 20 C 1.37810 * 120.68340 * 359.97438 * 19 17 16 21 21 C 1.38920 * 119.97099 * 0.23888 * 20 19 17 22 22 O 1.34443 * 124.92726 * 269.97521 * 13 12 11 23 23 H 0.96996 * 120.00310 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47345 * 59.99155 * 9 7 2 25 25 H 1.09005 * 109.46799 * 300.00015 * 9 7 2 26 26 H 1.08997 * 109.47940 * 59.99746 * 10 9 7 27 27 H 1.09002 * 109.47378 * 299.99263 * 10 9 7 28 28 H 1.00894 * 111.00287 * 303.95226 * 11 10 9 29 29 H 1.09003 * 109.47054 * 60.00024 * 12 11 10 30 30 H 1.09002 * 109.47526 * 300.00554 * 12 11 10 31 31 H 1.08007 * 126.90536 * 359.42800 * 14 13 12 32 32 H 1.08001 * 120.20416 * 0.02562 * 16 15 14 33 33 H 1.08003 * 119.65720 * 179.97438 * 19 17 16 34 34 H 1.08002 * 120.01042 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 6 2.2453 -3.6620 -0.0015 11 7 1.5109 -4.9342 -0.0020 12 6 2.4354 -6.0759 -0.0024 13 6 1.6473 -7.3604 -0.0023 14 6 1.2548 -8.0196 -1.1009 15 6 0.5237 -9.2018 -0.6293 16 6 -0.1314 -10.2583 -1.2608 17 6 -0.7351 -11.2364 -0.5006 18 35 -1.6263 -12.6724 -1.3489 19 6 -0.6924 -11.1709 0.8856 20 6 -0.0480 -10.1316 1.5210 21 6 0.5631 -9.1331 0.7732 22 8 1.2456 -8.0168 1.1001 23 1 -0.4850 0.8400 0.0004 24 1 0.6247 -2.5563 -0.8919 25 1 0.6241 -2.5575 0.8881 26 1 2.8714 -3.6048 0.8889 27 1 2.8726 -3.6040 -0.8910 28 1 0.8741 -4.9845 0.7791 29 1 3.0633 -6.0352 0.8877 30 1 3.0635 -6.0345 -0.8922 31 1 1.4316 -7.7330 -2.1271 32 1 -0.1647 -10.3101 -2.3390 33 1 -1.1691 -11.9425 1.4719 34 1 -0.0218 -10.0913 2.6000 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566926137.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:56 Heat of formation + Delta-G solvation = 4.662437 kcal Electronic energy + Delta-G solvation = -17745.026361 eV Core-core repulsion = 14689.323485 eV Total energy + Delta-G solvation = -3055.702876 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 323.026 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.57227 -39.12406 -37.64973 -35.19088 -33.97362 -33.04304 -32.16817 -30.41264 -29.84496 -27.19484 -25.25131 -23.74506 -22.86717 -22.53228 -22.01946 -18.54939 -18.50577 -17.74094 -17.35385 -17.09033 -16.45699 -16.36261 -15.46408 -15.33418 -15.13185 -14.63694 -14.22364 -14.15648 -13.92131 -13.75450 -13.42489 -13.08617 -12.93917 -12.80754 -12.43725 -12.17793 -11.93844 -11.69718 -11.48051 -11.34869 -11.31604 -11.17091 -10.56447 -9.58819 -9.45064 -9.24129 -8.20092 -6.31722 -0.25073 -0.00751 0.53521 1.22114 1.41818 1.43204 1.54074 1.58152 2.41147 2.44580 3.13789 3.18655 3.43059 3.56206 3.92089 3.98732 4.07093 4.13033 4.33314 4.40771 4.53486 4.60003 4.60261 4.76326 4.93021 5.01536 5.05761 5.07431 5.32166 5.41218 5.43753 5.64866 5.75407 6.03142 6.04795 6.19297 6.36369 6.86053 7.37873 8.92161 Molecular weight = 323.03amu Principal moments of inertia in cm(-1) A = 0.037009 B = 0.001946 C = 0.001911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.396998 B =14383.678769 C =14645.305052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.002 4.002 3 Si 0.968 3.032 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.261 1.261 7 C -0.543 4.543 8 H 0.065 0.935 9 C 0.029 3.971 10 C 0.084 3.916 11 N -0.695 5.695 12 C 0.135 3.865 13 C 0.033 3.967 14 C -0.186 4.186 15 C -0.143 4.143 16 C -0.044 4.044 17 C -0.115 4.115 18 Br -0.035 7.035 19 C -0.065 4.065 20 C -0.101 4.101 21 C 0.044 3.956 22 O -0.205 6.205 23 H 0.263 0.737 24 H -0.005 1.005 25 H -0.011 1.011 26 H 0.027 0.973 27 H 0.072 0.928 28 H 0.339 0.661 29 H 0.058 0.942 30 H 0.123 0.877 31 H 0.177 0.823 32 H 0.150 0.850 33 H 0.171 0.829 34 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.270 -29.519 -0.612 29.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.200 4.200 3 Si 0.792 3.208 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.185 1.185 7 C -0.581 4.581 8 H 0.083 0.917 9 C -0.008 4.008 10 C -0.044 4.044 11 N -0.326 5.326 12 C 0.007 3.993 13 C -0.014 4.014 14 C -0.206 4.206 15 C -0.145 4.145 16 C -0.064 4.064 17 C -0.194 4.194 18 Br 0.050 6.950 19 C -0.085 4.085 20 C -0.120 4.120 21 C -0.004 4.004 22 O -0.108 6.108 23 H 0.072 0.928 24 H 0.013 0.987 25 H 0.007 0.993 26 H 0.046 0.954 27 H 0.090 0.910 28 H 0.156 0.844 29 H 0.076 0.924 30 H 0.141 0.859 31 H 0.194 0.806 32 H 0.168 0.832 33 H 0.188 0.812 34 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -0.763 -29.869 -1.340 29.909 hybrid contribution 0.500 1.427 0.932 1.777 sum -0.263 -28.442 -0.408 28.446 Atomic orbital electron populations 1.70115 1.07913 1.27810 1.51515 1.26006 0.95755 1.03510 0.94695 0.85404 0.78627 0.78224 0.78511 1.19734 1.20951 1.18536 1.21622 0.93705 0.92039 1.50749 0.91689 1.18938 0.94404 0.92393 0.95090 1.21842 0.95625 0.87150 0.99792 1.60594 1.19998 1.01610 1.50411 1.20581 0.92077 0.82498 1.04118 1.22466 1.00041 0.95353 0.83540 1.22506 1.03036 0.94623 1.00385 1.20101 1.03221 0.97840 0.93309 1.20625 0.94211 0.90696 1.00899 1.21714 1.05252 0.97003 0.95476 1.96732 1.76424 1.41994 1.79832 1.21158 0.97272 0.97847 0.92201 1.20242 0.98975 0.91499 1.01293 1.20162 0.97265 0.88790 0.94221 1.83961 1.59843 1.31955 1.34997 0.92782 0.98664 0.99267 0.95430 0.91005 0.84388 0.92441 0.85873 0.80575 0.83223 0.81150 0.82009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.05 13.29 21.45 0.28 -56.76 16 2 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 3 Si 0.97 43.83 29.54 68.60 2.03 45.86 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 7 C -0.54 -30.47 9.11 25.60 0.23 -30.23 16 8 H 0.06 3.44 7.74 -2.91 -0.02 3.42 16 9 C 0.03 1.54 5.23 29.85 0.16 1.69 16 10 C 0.08 3.34 5.62 86.30 0.49 3.82 16 11 N -0.69 -23.79 6.49 -517.94 -3.36 -27.15 16 12 C 0.14 3.55 6.19 85.56 0.53 4.08 16 13 C 0.03 0.89 6.74 24.72 0.17 1.05 16 14 C -0.19 -4.60 11.01 23.54 0.26 -4.34 16 15 C -0.14 -3.48 6.40 -20.21 -0.13 -3.61 16 16 C -0.04 -0.90 9.83 22.45 0.22 -0.68 16 17 C -0.11 -2.07 6.22 22.31 0.14 -1.94 16 18 Br -0.04 -0.54 33.69 -20.37 -0.69 -1.23 16 19 C -0.07 -1.04 9.75 22.31 0.22 -0.82 16 20 C -0.10 -1.87 10.06 22.33 0.22 -1.65 16 21 C 0.04 1.08 7.41 22.98 0.17 1.25 16 22 O -0.21 -5.74 10.58 -9.33 -0.10 -5.84 16 23 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 24 H -0.01 -0.30 8.14 -2.39 -0.02 -0.31 16 25 H -0.01 -0.63 8.14 -2.38 -0.02 -0.65 16 26 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 28 H 0.34 11.92 8.72 -89.70 -0.78 11.14 16 29 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.12 2.75 8.14 -2.39 -0.02 2.73 16 31 H 0.18 3.67 8.06 -2.91 -0.02 3.65 16 32 H 0.15 2.55 8.06 -2.91 -0.02 2.52 16 33 H 0.17 1.69 8.06 -2.91 -0.02 1.67 16 34 H 0.16 2.18 8.06 -2.91 -0.02 2.16 16 Total: -1.00 -65.59 319.79 1.63 -63.95 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: 0.34 Total: 12.18 kcal Atomic # 6 Polarization: -34.15 SS G_CDS: 3.13 Total: -31.02 kcal Atomic # 7 Polarization: -80.83 SS G_CDS: -3.08 Total: -83.91 kcal Atomic # 8 Polarization: -5.74 SS G_CDS: -0.10 Total: -5.84 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 35 Polarization: -0.54 SS G_CDS: -0.69 Total: -1.23 kcal Total: -65.59 1.63 -63.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566926137.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.617 kcal (2) G-P(sol) polarization free energy of solvation -65.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds