Wall clock time and date at job start Tue Mar 31 2020 13:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86800 * 120.00037 * 2 1 4 4 H 1.48501 * 109.47463 * 240.00528 * 3 2 1 5 5 H 1.48500 * 109.47086 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47268 * 119.99967 * 3 2 1 7 7 C 1.38948 * 120.00104 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99904 * 179.97438 * 7 2 1 9 9 N 1.37097 * 119.99668 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99638 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00245 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00089 * 180.02562 * 10 9 7 13 13 N 1.46495 * 109.47385 * 180.02562 * 12 10 9 14 14 C 1.34779 * 120.00034 * 180.27435 * 13 12 10 15 15 O 1.21681 * 120.00142 * 359.72439 * 14 13 12 16 16 C 1.46683 * 119.99786 * 179.71817 * 14 13 12 17 17 S 1.76209 * 126.13550 * 353.85565 * 16 14 13 18 18 C 1.70950 * 90.31781 * 179.91816 * 17 16 14 19 19 N 1.29430 * 110.39076 * 0.34824 * 18 17 16 20 20 C 1.30950 * 117.36093 * 359.72295 * 19 18 17 21 21 C 1.50704 * 122.90277 * 180.02562 * 20 19 18 22 22 F 1.39904 * 109.46987 * 243.80348 * 21 20 19 23 23 F 1.39899 * 109.46989 * 3.80071 * 21 20 19 24 24 F 1.39894 * 109.47348 * 123.80130 * 21 20 19 25 25 H 0.97005 * 119.99851 * 359.97438 * 1 2 3 26 26 H 0.96998 * 120.00334 * 0.02562 * 9 7 2 27 27 H 1.08999 * 109.47198 * 59.99745 * 12 10 9 28 28 H 1.09002 * 109.46970 * 299.99991 * 12 10 9 29 29 H 0.96997 * 120.00020 * 359.97438 * 13 12 10 30 30 H 1.07993 * 124.80776 * 180.10523 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2831 2.7465 0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0088 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3233 -2.3906 -0.0005 10 6 1.9972 -3.5578 -0.0005 11 8 3.2101 -3.5578 -0.0001 12 6 1.2438 -4.8629 -0.0011 13 7 2.1957 -5.9764 -0.0004 14 6 1.7465 -7.2471 -0.0063 15 8 0.5502 -7.4695 -0.0072 16 6 2.6997 -8.3619 -0.0118 17 16 4.4504 -8.2315 -0.1639 18 6 4.5955 -9.9318 -0.0625 19 7 3.4284 -10.4773 0.0620 20 6 2.3910 -9.6788 0.0935 21 6 0.9766 -10.1793 0.2351 22 9 0.2511 -9.8592 -0.9175 23 9 0.9883 -11.5675 0.4082 24 9 0.3774 -9.5759 1.3459 25 1 -0.4850 0.8401 0.0004 26 1 0.3533 -2.3906 -0.0005 27 1 0.6174 -4.9204 -0.8913 28 1 0.6168 -4.9208 0.8886 29 1 3.1494 -5.7991 0.0000 30 1 5.5284 -10.4742 -0.1012 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118314456.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:57 Heat of formation + Delta-G solvation = -167.832937 kcal Electronic energy + Delta-G solvation = -24391.540282 eV Core-core repulsion = 19899.431753 eV Total energy + Delta-G solvation = -4492.108529 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 323.034 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.08437 -47.60984 -47.53739 -40.67959 -39.47354 -38.18577 -34.69390 -33.87795 -31.88789 -31.45594 -28.82362 -27.02402 -25.12093 -24.63153 -21.99513 -20.53944 -19.88316 -19.44076 -18.48090 -18.46038 -18.04619 -17.24286 -17.01646 -16.02432 -15.82875 -15.43903 -15.09399 -14.92508 -14.51887 -14.36011 -14.30667 -14.10839 -13.99257 -13.81470 -13.69199 -13.66312 -13.54514 -13.11898 -12.35760 -12.12423 -11.91905 -11.69815 -11.16490 -10.58001 -10.55803 -10.38829 -10.22406 -10.11911 -9.79432 -9.70746 -9.11436 -8.75756 -8.18905 -6.58841 -4.01428 -0.41660 0.51234 0.92895 1.73007 2.43655 2.80216 2.86728 3.08230 3.17562 3.21176 3.37172 3.63309 3.84478 4.03778 4.23370 4.35065 4.55021 4.66775 4.72517 5.07817 5.09287 5.73682 5.79970 5.91707 6.31364 6.81640 7.35433 7.38753 7.81286 7.97222 8.35416 8.96121 9.29512 9.76565 10.57630 Molecular weight = 323.03amu Principal moments of inertia in cm(-1) A = 0.025261 B = 0.002907 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.167315 B = 9627.991573 C =10550.687948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.028 3.972 3 Si 0.935 3.065 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.308 4.308 8 H 0.106 0.894 9 N -0.544 5.544 10 C 0.425 3.575 11 O -0.599 6.599 12 C 0.108 3.892 13 N -0.693 5.693 14 C 0.581 3.419 15 O -0.508 6.508 16 C -0.232 4.232 17 S 0.251 5.749 18 C 0.024 3.976 19 N -0.444 5.444 20 C 0.038 3.962 21 C 0.551 3.449 22 F -0.158 7.158 23 F -0.168 7.168 24 F -0.157 7.157 25 H 0.276 0.724 26 H 0.397 0.603 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.410 0.590 30 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.715 -18.048 -0.233 19.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.176 4.176 3 Si 0.761 3.239 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.437 4.437 8 H 0.124 0.876 9 N -0.178 5.178 10 C 0.210 3.790 11 O -0.486 6.486 12 C -0.019 4.019 13 N -0.347 5.347 14 C 0.363 3.637 15 O -0.385 6.385 16 C -0.358 4.358 17 S 0.508 5.492 18 C -0.271 4.271 19 N -0.156 5.156 20 C -0.104 4.104 21 C 0.494 3.506 22 F -0.139 7.139 23 F -0.150 7.150 24 F -0.139 7.139 25 H 0.086 0.914 26 H 0.231 0.769 27 H 0.109 0.891 28 H 0.109 0.891 29 H 0.248 0.752 30 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 7.248 -17.752 -0.312 19.177 hybrid contribution -0.646 0.472 0.103 0.807 sum 6.602 -17.279 -0.209 18.499 Atomic orbital electron populations 1.69602 1.06048 1.28809 1.48719 1.25343 0.95673 1.00010 0.96547 0.85858 0.78800 0.80036 0.79202 1.19711 1.20800 1.19715 1.19690 0.93474 0.81913 1.48652 0.87621 1.41772 1.09545 1.04417 1.62073 1.19621 0.88271 0.84876 0.86225 1.90496 1.13608 1.86715 1.57756 1.21085 0.91536 0.85222 1.04013 1.45532 1.11839 1.04135 1.73148 1.16577 0.87033 0.81631 0.78454 1.90927 1.14310 1.84051 1.49260 1.25845 0.99440 0.98030 1.12512 1.84440 0.97225 1.06928 1.60593 1.28804 0.99895 0.96230 1.02191 1.65808 0.97386 1.37427 1.14929 1.20375 0.94929 0.88618 1.06486 1.16954 0.83559 0.74957 0.75176 1.93266 1.78861 1.92472 1.49285 1.93215 1.96753 1.29796 1.95206 1.93267 1.84620 1.83223 1.52750 0.91402 0.76931 0.89083 0.89067 0.75175 0.76537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.17 13.05 55.50 0.72 -22.44 16 2 C 0.03 0.70 5.50 -17.47 -0.10 0.61 16 3 Si 0.93 19.92 29.55 -169.99 -5.02 14.90 16 4 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 5 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 6 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 7 C -0.31 -8.08 9.68 -14.93 -0.14 -8.22 16 8 H 0.11 2.87 7.16 -52.48 -0.38 2.50 16 9 N -0.54 -12.92 5.29 -10.96 -0.06 -12.97 16 10 C 0.42 9.23 7.85 -10.99 -0.09 9.14 16 11 O -0.60 -14.48 15.24 5.55 0.08 -14.40 16 12 C 0.11 1.87 6.15 -5.20 -0.03 1.84 16 13 N -0.69 -10.94 5.52 -62.80 -0.35 -11.29 16 14 C 0.58 9.04 7.69 -12.85 -0.10 8.94 16 15 O -0.51 -9.13 13.11 5.21 0.07 -9.07 16 16 C -0.23 -2.99 6.44 -37.09 -0.24 -3.23 16 17 S 0.25 2.13 22.37 -107.50 -2.41 -0.28 16 18 C 0.02 0.18 12.22 51.75 0.63 0.81 16 19 N -0.44 -5.03 10.11 -11.53 -0.12 -5.15 16 20 C 0.04 0.50 6.20 -83.89 -0.52 -0.02 16 21 C 0.55 7.96 2.79 36.01 0.10 8.07 16 22 F -0.16 -2.43 15.93 2.25 0.04 -2.39 16 23 F -0.17 -2.31 17.01 2.25 0.04 -2.27 16 24 F -0.16 -2.44 15.56 2.25 0.04 -2.41 16 25 H 0.28 6.80 8.31 -40.82 -0.34 6.46 16 26 H 0.40 9.06 7.90 -40.82 -0.32 8.73 16 27 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 28 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 29 H 0.41 6.25 6.64 -40.82 -0.27 5.97 16 30 H 0.22 0.62 8.06 -52.49 -0.42 0.19 16 LS Contribution 302.94 15.07 4.57 4.57 Total: -1.00 -31.24 302.94 -4.25 -35.49 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -1.37 Total: 9.77 kcal Atomic # 6 Polarization: 18.42 SS G_CDS: -0.48 Total: 17.93 kcal Atomic # 7 Polarization: -52.06 SS G_CDS: 0.20 Total: -51.85 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: 0.15 Total: -23.46 kcal Atomic # 9 Polarization: -7.18 SS G_CDS: 0.11 Total: -7.07 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Atomic # 16 Polarization: 2.13 SS G_CDS: -2.41 Total: -0.28 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.24 -4.25 -35.49 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118314456.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.339 kcal (2) G-P(sol) polarization free energy of solvation -31.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds