Wall clock time and date at job start Tue Mar 31 2020 13:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86800 * 120.00037 * 2 1 4 4 H 1.48501 * 109.47463 * 240.00528 * 3 2 1 5 5 H 1.48500 * 109.47086 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47268 * 119.99967 * 3 2 1 7 7 C 1.38948 * 120.00104 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99904 * 179.97438 * 7 2 1 9 9 N 1.37097 * 119.99668 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99638 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00245 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00089 * 180.02562 * 10 9 7 13 13 N 1.46495 * 109.47385 * 180.02562 * 12 10 9 14 14 C 1.34779 * 120.00034 * 180.27435 * 13 12 10 15 15 O 1.21681 * 120.00142 * 359.72439 * 14 13 12 16 16 C 1.46683 * 119.99786 * 179.71817 * 14 13 12 17 17 S 1.76209 * 126.13550 * 353.85565 * 16 14 13 18 18 C 1.70950 * 90.31781 * 179.91816 * 17 16 14 19 19 N 1.29430 * 110.39076 * 0.34824 * 18 17 16 20 20 C 1.30950 * 117.36093 * 359.72295 * 19 18 17 21 21 C 1.50704 * 122.90277 * 180.02562 * 20 19 18 22 22 F 1.39904 * 109.46987 * 243.80348 * 21 20 19 23 23 F 1.39899 * 109.46989 * 3.80071 * 21 20 19 24 24 F 1.39894 * 109.47348 * 123.80130 * 21 20 19 25 25 H 0.97005 * 119.99851 * 359.97438 * 1 2 3 26 26 H 0.96998 * 120.00334 * 0.02562 * 9 7 2 27 27 H 1.08999 * 109.47198 * 59.99745 * 12 10 9 28 28 H 1.09002 * 109.46970 * 299.99991 * 12 10 9 29 29 H 0.96997 * 120.00020 * 359.97438 * 13 12 10 30 30 H 1.07993 * 124.80776 * 180.10523 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2831 2.7465 0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0088 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3233 -2.3906 -0.0005 10 6 1.9972 -3.5578 -0.0005 11 8 3.2101 -3.5578 -0.0001 12 6 1.2438 -4.8629 -0.0011 13 7 2.1957 -5.9764 -0.0004 14 6 1.7465 -7.2471 -0.0063 15 8 0.5502 -7.4695 -0.0072 16 6 2.6997 -8.3619 -0.0118 17 16 4.4504 -8.2315 -0.1639 18 6 4.5955 -9.9318 -0.0625 19 7 3.4284 -10.4773 0.0620 20 6 2.3910 -9.6788 0.0935 21 6 0.9766 -10.1793 0.2351 22 9 0.2511 -9.8592 -0.9175 23 9 0.9883 -11.5675 0.4082 24 9 0.3774 -9.5759 1.3459 25 1 -0.4850 0.8401 0.0004 26 1 0.3533 -2.3906 -0.0005 27 1 0.6174 -4.9204 -0.8913 28 1 0.6168 -4.9208 0.8886 29 1 3.1494 -5.7991 0.0000 30 1 5.5284 -10.4742 -0.1012 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118314456.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:56 Heat of formation + Delta-G solvation = -191.832896 kcal Electronic energy + Delta-G solvation = -24392.580998 eV Core-core repulsion = 19899.431753 eV Total energy + Delta-G solvation = -4493.149245 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 323.034 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -51.20471 -48.71652 -48.69387 -41.66234 -40.73272 -39.80664 -36.32485 -35.49411 -33.40320 -32.77794 -30.09216 -28.30021 -26.40858 -25.96794 -23.14131 -21.65380 -21.32204 -20.64683 -20.07188 -19.60846 -19.45802 -18.24363 -18.17988 -17.32970 -17.05674 -16.88807 -16.51757 -16.11759 -16.02817 -15.52467 -15.45330 -15.39399 -15.24543 -15.05525 -15.01357 -14.84564 -14.76011 -14.07388 -14.01071 -13.67127 -13.53917 -12.89709 -12.82366 -12.46493 -12.13744 -11.66919 -11.55990 -11.11729 -10.99626 -10.58924 -10.53963 -10.40265 -10.10009 -8.50959 -6.01279 -1.26400 -0.28293 0.20823 0.91127 1.38412 1.43813 1.44191 1.53835 1.64125 1.68161 1.89629 2.29427 2.38204 2.84965 3.05533 3.16512 3.24152 3.37871 3.55531 3.73438 4.17358 4.37354 4.39042 4.46186 4.96564 5.38514 5.90434 6.02519 6.14922 6.46632 6.74737 7.02949 7.42819 7.92239 8.65466 Molecular weight = 323.03amu Principal moments of inertia in cm(-1) A = 0.025261 B = 0.002907 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.167315 B = 9627.991573 C =10550.687948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.009 4.009 3 Si 0.996 3.004 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.269 1.269 7 C -0.338 4.338 8 H 0.089 0.911 9 N -0.556 5.556 10 C 0.432 3.568 11 O -0.622 6.622 12 C 0.120 3.880 13 N -0.693 5.693 14 C 0.584 3.416 15 O -0.539 6.539 16 C -0.271 4.271 17 S 0.308 5.692 18 C 0.053 3.947 19 N -0.471 5.471 20 C 0.038 3.962 21 C 0.544 3.456 22 F -0.168 7.168 23 F -0.167 7.167 24 F -0.168 7.168 25 H 0.280 0.720 26 H 0.399 0.601 27 H 0.103 0.897 28 H 0.103 0.897 29 H 0.413 0.587 30 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.670 -18.601 -0.351 20.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.210 4.210 3 Si 0.819 3.181 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.194 1.194 7 C -0.467 4.467 8 H 0.107 0.893 9 N -0.191 5.191 10 C 0.219 3.781 11 O -0.510 6.510 12 C -0.007 4.007 13 N -0.347 5.347 14 C 0.368 3.632 15 O -0.418 6.418 16 C -0.398 4.398 17 S 0.567 5.433 18 C -0.241 4.241 19 N -0.184 5.184 20 C -0.105 4.105 21 C 0.487 3.513 22 F -0.149 7.149 23 F -0.148 7.148 24 F -0.150 7.150 25 H 0.089 0.911 26 H 0.234 0.766 27 H 0.121 0.879 28 H 0.121 0.879 29 H 0.252 0.748 30 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges 9.225 -18.316 -0.433 20.513 hybrid contribution -1.138 0.514 0.135 1.256 sum 8.087 -17.802 -0.298 19.555 Atomic orbital electron populations 1.69673 1.07049 1.29735 1.49075 1.26122 0.96492 1.02703 0.95712 0.84937 0.77723 0.76243 0.79167 1.19381 1.19869 1.19420 1.19722 0.93067 0.83426 1.50478 0.89283 1.41820 1.09647 1.04564 1.63109 1.20285 0.88129 0.85759 0.83940 1.90472 1.14940 1.87434 1.58157 1.20912 0.91342 0.83278 1.05169 1.45472 1.11637 1.03992 1.73639 1.16836 0.87189 0.81829 0.77297 1.90902 1.15866 1.84524 1.50526 1.25594 1.01953 0.96870 1.15375 1.84303 0.92973 1.07120 1.58933 1.29703 1.00303 0.96174 0.97956 1.65867 0.97994 1.37521 1.16983 1.20216 0.94631 0.88927 1.06743 1.17213 0.84529 0.75033 0.74574 1.93235 1.79337 1.92580 1.49771 1.93208 1.96806 1.29611 1.95155 1.93235 1.85015 1.83448 1.53264 0.91063 0.76645 0.87868 0.87947 0.74807 0.71572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.52 13.05 21.66 0.28 -47.24 16 2 C -0.01 -0.47 5.50 84.93 0.47 -0.01 16 3 Si 1.00 40.47 29.55 68.60 2.03 42.50 16 4 H -0.27 -10.71 7.11 99.48 0.71 -10.01 16 5 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 6 H -0.27 -10.74 7.11 99.48 0.71 -10.04 16 7 C -0.34 -17.91 9.68 84.04 0.81 -17.10 16 8 H 0.09 4.93 7.16 -2.91 -0.02 4.91 16 9 N -0.56 -26.72 5.29 -306.98 -1.62 -28.34 16 10 C 0.43 18.79 7.85 87.66 0.69 19.48 16 11 O -0.62 -30.06 15.24 -3.07 -0.05 -30.11 16 12 C 0.12 4.10 6.15 85.63 0.53 4.62 16 13 N -0.69 -21.45 5.52 -470.83 -2.60 -24.05 16 14 C 0.58 17.97 7.69 86.45 0.66 18.63 16 15 O -0.54 -19.54 13.11 -4.29 -0.06 -19.60 16 16 C -0.27 -6.69 6.44 23.88 0.15 -6.53 16 17 S 0.31 4.32 22.37 -56.49 -1.26 3.05 16 18 C 0.05 0.57 12.22 130.60 1.60 2.17 16 19 N -0.47 -9.57 10.11 -190.40 -1.92 -11.50 16 20 C 0.04 0.97 6.20 42.09 0.26 1.23 16 21 C 0.54 15.79 2.79 71.24 0.20 15.99 16 22 F -0.17 -5.28 15.93 44.97 0.72 -4.56 16 23 F -0.17 -4.54 17.01 44.97 0.76 -3.77 16 24 F -0.17 -5.33 15.56 44.97 0.70 -4.63 16 25 H 0.28 13.67 8.31 -92.70 -0.77 12.90 16 26 H 0.40 18.49 7.90 -92.71 -0.73 17.75 16 27 H 0.10 3.31 8.14 -2.39 -0.02 3.29 16 28 H 0.10 3.30 8.14 -2.39 -0.02 3.29 16 29 H 0.41 12.19 6.64 -92.71 -0.62 11.58 16 30 H 0.27 -0.06 8.06 -2.91 -0.02 -0.09 16 Total: -1.00 -68.39 302.94 2.27 -66.12 By element: Atomic # 1 Polarization: 23.72 SS G_CDS: -0.08 Total: 23.64 kcal Atomic # 6 Polarization: 33.11 SS G_CDS: 5.37 Total: 38.48 kcal Atomic # 7 Polarization: -105.27 SS G_CDS: -5.86 Total: -111.13 kcal Atomic # 8 Polarization: -49.60 SS G_CDS: -0.10 Total: -49.71 kcal Atomic # 9 Polarization: -15.14 SS G_CDS: 2.18 Total: -12.96 kcal Atomic # 14 Polarization: 40.47 SS G_CDS: 2.03 Total: 42.50 kcal Atomic # 16 Polarization: 4.32 SS G_CDS: -1.26 Total: 3.05 kcal Total: -68.39 2.27 -66.12 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118314456.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.713 kcal (2) G-P(sol) polarization free energy of solvation -68.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds