Wall clock time and date at job start Tue Mar 31 2020 13:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 120.00352 * 2 1 4 4 H 1.48501 * 109.46923 * 239.99680 * 3 2 1 5 5 H 1.48504 * 109.46709 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47176 * 119.99427 * 3 2 1 7 7 C 1.37879 * 120.00072 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00139 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99824 * 0.02562 * 7 2 1 10 10 C 1.50700 * 109.47148 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99810 * 0.02562 * 10 9 7 12 12 N 1.34777 * 119.99675 * 180.28037 * 10 9 7 13 13 C 1.39940 * 119.99754 * 179.72983 * 12 10 9 14 14 N 1.30655 * 126.17330 * 359.67669 * 13 12 10 15 15 N 1.39857 * 110.03775 * 179.87975 * 14 13 12 16 16 H 0.96992 * 125.40901 * 180.14951 * 15 14 13 17 17 C 1.37098 * 109.18931 * 0.40906 * 15 14 13 18 18 C 1.39300 * 133.76708 * 179.74313 * 17 15 14 19 19 C 1.36584 * 119.86628 * 180.02562 * 18 17 15 20 20 C 1.39031 * 120.78954 * 0.02562 * 19 18 17 21 21 Br 1.89092 * 119.70574 * 179.97438 * 20 19 18 22 22 C 1.36579 * 120.58991 * 0.02562 * 20 19 18 23 23 C 1.39820 * 119.64268 * 359.97263 * 22 20 19 24 24 H 0.97010 * 119.99929 * 0.02562 * 1 2 3 25 25 H 1.09009 * 109.46601 * 59.99932 * 9 7 2 26 26 H 1.08998 * 109.47035 * 300.00439 * 9 7 2 27 27 H 0.97001 * 120.00485 * 359.71840 * 12 10 9 28 28 H 1.08004 * 120.06996 * 0.02562 * 18 17 15 29 29 H 1.07998 * 119.60790 * 180.02562 * 19 18 17 30 30 H 1.08006 * 120.18120 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2302 -3.6446 0.0005 11 8 3.4227 -3.4230 0.0010 12 7 1.7809 -4.9153 -0.0052 13 6 2.6902 -5.9790 -0.0109 14 7 3.9930 -5.8797 -0.0173 15 7 4.5706 -7.1535 -0.0188 16 1 5.5226 -7.3388 -0.0212 17 6 3.5775 -8.0986 -0.0223 18 6 3.5730 -9.4916 -0.0295 19 6 2.3863 -10.1679 -0.0319 20 6 1.1766 -9.4827 -0.0276 21 35 -0.4482 -10.4499 -0.0317 22 6 1.1513 -8.1171 -0.0216 23 6 2.3535 -7.4032 -0.0191 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5570 -0.8898 26 1 0.6239 -2.5567 0.8902 27 1 0.8272 -5.0925 -0.0052 28 1 4.5059 -10.0358 -0.0333 29 1 2.3877 -11.2479 -0.0370 30 1 0.2078 -7.5915 -0.0187 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143189708.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:38 Heat of formation + Delta-G solvation = 53.502152 kcal Electronic energy + Delta-G solvation = -18054.235212 eV Core-core repulsion = 14897.109841 eV Total energy + Delta-G solvation = -3157.125371 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 323.001 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.44701 -38.92900 -37.36290 -34.53020 -33.01888 -32.15002 -31.28326 -29.99369 -28.90904 -28.24000 -24.22502 -23.37208 -22.35183 -21.25774 -19.61444 -18.26238 -16.89241 -16.54877 -16.05732 -15.51345 -15.46778 -15.32688 -14.44990 -14.38958 -14.17671 -14.04021 -12.98965 -12.76628 -12.29282 -12.16711 -11.63721 -11.52952 -11.02915 -10.86074 -10.78773 -10.66132 -10.50245 -10.40896 -10.02997 -9.39186 -9.37975 -8.89849 -8.72757 -8.48695 -7.76595 -6.12123 -4.12562 0.72195 1.04708 1.46964 2.43323 2.51397 3.33401 3.34895 3.35273 3.37425 3.45548 3.71735 4.23420 4.43324 4.50722 4.70863 4.97399 5.02507 5.20096 5.26570 5.53269 5.79107 5.80284 5.93813 6.06631 6.36307 6.84624 7.03010 7.17661 7.19062 7.43522 7.88561 7.95295 8.25286 8.93327 8.97896 9.52818 10.99980 Molecular weight = 323.00amu Principal moments of inertia in cm(-1) A = 0.022630 B = 0.002907 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.003559 B = 9630.610597 C =10852.449077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.057 3.943 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.513 4.513 8 H 0.076 0.924 9 C 0.012 3.988 10 C 0.505 3.495 11 O -0.489 6.489 12 N -0.647 5.647 13 C 0.336 3.664 14 N -0.238 5.238 15 N -0.504 5.504 16 H 0.442 0.558 17 C 0.156 3.844 18 C -0.140 4.140 19 C -0.043 4.043 20 C -0.140 4.140 21 Br -0.054 7.054 22 C 0.002 3.998 23 C -0.184 4.184 24 H 0.264 0.736 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.418 0.582 28 H 0.135 0.865 29 H 0.137 0.863 30 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.305 -25.580 -0.074 25.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.144 4.144 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.552 4.552 8 H 0.094 0.906 9 C -0.028 4.028 10 C 0.295 3.705 11 O -0.357 6.357 12 N -0.300 5.300 13 C 0.068 3.932 14 N -0.062 5.062 15 N -0.218 5.218 16 H 0.287 0.713 17 C 0.036 3.964 18 C -0.163 4.163 19 C -0.065 4.065 20 C -0.221 4.221 21 Br 0.030 6.970 22 C -0.020 4.020 23 C -0.195 4.195 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.255 0.745 28 H 0.153 0.847 29 H 0.155 0.845 30 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 0.793 -24.663 -0.076 24.675 hybrid contribution 0.090 0.293 -0.001 0.306 sum 0.883 -24.370 -0.077 24.386 Atomic orbital electron populations 1.69938 1.06031 1.27236 1.50614 1.24987 0.94933 0.99517 0.94953 0.86451 0.79376 0.82084 0.78941 1.20062 1.21287 1.20056 1.21090 0.94260 0.88875 1.50954 0.90612 1.19281 0.93849 0.89575 1.00059 1.22606 0.91944 0.82330 0.73618 1.90656 1.17557 1.83052 1.44457 1.43921 1.08462 1.03670 1.73996 1.20537 0.89275 0.86197 0.97228 1.77489 1.06419 0.97836 1.24427 1.46058 1.07874 1.01196 1.66684 0.71284 1.18904 0.88841 0.91688 0.96999 1.19778 0.98928 0.89594 1.08005 1.20575 0.89991 1.00072 0.95885 1.21018 0.91955 0.93987 1.15118 1.96694 1.28177 1.73992 1.98100 1.20236 0.97044 0.91848 0.92887 1.19423 0.93701 0.90993 1.15363 0.92692 0.92801 0.92797 0.74475 0.84692 0.84505 0.84454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.68 13.29 55.43 0.74 -24.94 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.51 -14.53 8.92 -34.44 -0.31 -14.84 16 8 H 0.08 2.24 6.75 -52.49 -0.35 1.89 16 9 C 0.01 0.28 5.46 -29.03 -0.16 0.13 16 10 C 0.51 11.28 7.79 -10.98 -0.09 11.19 16 11 O -0.49 -12.70 14.19 5.55 0.08 -12.62 16 12 N -0.65 -11.21 5.44 -9.72 -0.05 -11.26 16 13 C 0.34 5.74 8.06 -152.63 -1.23 4.51 16 14 N -0.24 -4.39 10.79 32.61 0.35 -4.03 16 15 N -0.50 -6.75 7.36 32.36 0.24 -6.51 16 16 H 0.44 4.35 8.96 -182.79 -1.64 2.71 16 17 C 0.16 1.91 7.33 -84.16 -0.62 1.29 16 18 C -0.14 -1.27 10.03 -39.78 -0.40 -1.66 16 19 C -0.04 -0.38 9.69 -39.88 -0.39 -0.76 16 20 C -0.14 -1.41 6.18 -39.89 -0.25 -1.65 16 21 Br -0.05 -0.50 33.67 -68.01 -2.29 -2.79 16 22 C 0.00 0.02 9.77 -39.59 -0.39 -0.36 16 23 C -0.18 -2.51 6.37 -105.09 -0.67 -3.18 16 24 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 25 H 0.05 1.30 8.14 -51.92 -0.42 0.88 16 26 H 0.05 1.30 8.14 -51.93 -0.42 0.88 16 27 H 0.42 5.59 8.82 -40.82 -0.36 5.23 16 28 H 0.14 0.82 8.06 -52.48 -0.42 0.39 16 29 H 0.14 0.87 8.06 -52.49 -0.42 0.44 16 30 H 0.14 1.31 8.06 -52.48 -0.42 0.89 16 LS Contribution 293.98 15.07 4.43 4.43 Total: -1.00 -33.67 293.98 -9.71 -43.39 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -3.60 Total: 1.34 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: -4.58 Total: -3.83 kcal Atomic # 7 Polarization: -48.01 SS G_CDS: 1.27 Total: -46.74 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: 0.08 Total: -12.62 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 35 Polarization: -0.50 SS G_CDS: -2.29 Total: -2.79 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -33.67 -9.71 -43.39 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143189708.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.888 kcal (2) G-P(sol) polarization free energy of solvation -33.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds