Wall clock time and date at job start Tue Mar 31 2020 13:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 120.00352 * 2 1 4 4 H 1.48501 * 109.46923 * 239.99680 * 3 2 1 5 5 H 1.48504 * 109.46709 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47176 * 119.99427 * 3 2 1 7 7 C 1.37879 * 120.00072 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00139 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99824 * 0.02562 * 7 2 1 10 10 C 1.50700 * 109.47148 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99810 * 0.02562 * 10 9 7 12 12 N 1.34777 * 119.99675 * 180.28037 * 10 9 7 13 13 C 1.39940 * 119.99754 * 179.72983 * 12 10 9 14 14 N 1.30655 * 126.17330 * 359.67669 * 13 12 10 15 15 N 1.39857 * 110.03775 * 179.87975 * 14 13 12 16 16 H 0.96992 * 125.40901 * 180.14951 * 15 14 13 17 17 C 1.37098 * 109.18931 * 0.40906 * 15 14 13 18 18 C 1.39300 * 133.76708 * 179.74313 * 17 15 14 19 19 C 1.36584 * 119.86628 * 180.02562 * 18 17 15 20 20 C 1.39031 * 120.78954 * 0.02562 * 19 18 17 21 21 Br 1.89092 * 119.70574 * 179.97438 * 20 19 18 22 22 C 1.36579 * 120.58991 * 0.02562 * 20 19 18 23 23 C 1.39820 * 119.64268 * 359.97263 * 22 20 19 24 24 H 0.97010 * 119.99929 * 0.02562 * 1 2 3 25 25 H 1.09009 * 109.46601 * 59.99932 * 9 7 2 26 26 H 1.08998 * 109.47035 * 300.00439 * 9 7 2 27 27 H 0.97001 * 120.00485 * 359.71840 * 12 10 9 28 28 H 1.08004 * 120.06996 * 0.02562 * 18 17 15 29 29 H 1.07998 * 119.60790 * 180.02562 * 19 18 17 30 30 H 1.08006 * 120.18120 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2302 -3.6446 0.0005 11 8 3.4227 -3.4230 0.0010 12 7 1.7809 -4.9153 -0.0052 13 6 2.6902 -5.9790 -0.0109 14 7 3.9930 -5.8797 -0.0173 15 7 4.5706 -7.1535 -0.0188 16 1 5.5226 -7.3388 -0.0212 17 6 3.5775 -8.0986 -0.0223 18 6 3.5730 -9.4916 -0.0295 19 6 2.3863 -10.1679 -0.0319 20 6 1.1766 -9.4827 -0.0276 21 35 -0.4482 -10.4499 -0.0317 22 6 1.1513 -8.1171 -0.0216 23 6 2.3535 -7.4032 -0.0191 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5570 -0.8898 26 1 0.6239 -2.5567 0.8902 27 1 0.8272 -5.0925 -0.0052 28 1 4.5059 -10.0358 -0.0333 29 1 2.3877 -11.2479 -0.0370 30 1 0.2078 -7.5915 -0.0187 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143189708.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:37 Heat of formation + Delta-G solvation = 31.307457 kcal Electronic energy + Delta-G solvation = -18055.197646 eV Core-core repulsion = 14897.109841 eV Total energy + Delta-G solvation = -3158.087805 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 323.001 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.51350 -40.54644 -38.33219 -36.00960 -35.12918 -33.12457 -32.25790 -31.30110 -30.48588 -29.25082 -26.13183 -24.35872 -23.40563 -22.59002 -21.10292 -19.25290 -18.55810 -18.11149 -17.43842 -16.94988 -16.65379 -16.49787 -16.29031 -15.66180 -15.24744 -14.90064 -14.80856 -14.20002 -13.73140 -13.34187 -13.08310 -12.83874 -12.66660 -12.34070 -12.31253 -12.06930 -11.95758 -11.49724 -11.41585 -11.19676 -10.68149 -10.63245 -10.44185 -9.75210 -8.80858 -8.26466 -6.33617 -0.16880 0.18662 0.68211 1.13805 1.37004 1.41910 1.43270 1.52683 2.00393 2.15082 2.43487 2.56341 3.09579 3.28105 3.60838 3.75105 4.08193 4.19366 4.25879 4.44448 4.78917 4.86976 5.01425 5.06030 5.16987 5.22086 5.50305 5.55943 5.72472 5.91270 6.16116 6.41258 6.71912 6.80582 7.24126 7.37613 8.85186 Molecular weight = 323.00amu Principal moments of inertia in cm(-1) A = 0.022630 B = 0.002907 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.003559 B = 9630.610597 C =10852.449077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.015 3.985 3 Si 0.962 3.038 4 H -0.274 1.274 5 H -0.273 1.273 6 H -0.274 1.274 7 C -0.541 4.541 8 H 0.054 0.946 9 C 0.016 3.984 10 C 0.513 3.487 11 O -0.533 6.533 12 N -0.631 5.631 13 C 0.314 3.686 14 N -0.288 5.288 15 N -0.496 5.496 16 H 0.455 0.545 17 C 0.149 3.851 18 C -0.128 4.128 19 C -0.036 4.036 20 C -0.138 4.138 21 Br -0.043 7.043 22 C -0.009 4.009 23 C -0.198 4.198 24 H 0.269 0.731 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.435 0.565 28 H 0.172 0.828 29 H 0.169 0.831 30 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.406 -27.880 -0.086 27.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.184 4.184 3 Si 0.787 3.213 4 H -0.199 1.199 5 H -0.198 1.198 6 H -0.199 1.199 7 C -0.579 4.579 8 H 0.073 0.927 9 C -0.023 4.023 10 C 0.302 3.698 11 O -0.405 6.405 12 N -0.284 5.284 13 C 0.047 3.953 14 N -0.112 5.112 15 N -0.213 5.213 16 H 0.302 0.698 17 C 0.030 3.970 18 C -0.150 4.150 19 C -0.058 4.058 20 C -0.219 4.219 21 Br 0.042 6.958 22 C -0.031 4.031 23 C -0.209 4.209 24 H 0.078 0.922 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.276 0.724 28 H 0.190 0.810 29 H 0.187 0.813 30 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 0.652 -27.025 -0.088 27.033 hybrid contribution 0.079 0.783 0.002 0.787 sum 0.731 -26.243 -0.086 26.253 Atomic orbital electron populations 1.70001 1.06963 1.28274 1.50728 1.25711 0.95839 1.02504 0.94363 0.85545 0.78405 0.78528 0.78820 1.19908 1.19768 1.19896 1.21303 0.93673 0.91125 1.51830 0.92737 1.19098 0.93858 0.89477 0.99910 1.22058 0.90735 0.83593 0.73391 1.90629 1.18876 1.84162 1.46783 1.43317 1.09585 1.02599 1.72929 1.20649 0.89114 0.87225 0.98353 1.77291 1.07660 1.01191 1.25048 1.45881 1.08738 0.99982 1.66676 0.69768 1.19276 0.87774 0.92791 0.97209 1.20190 1.00745 0.87970 1.06121 1.21004 0.89112 1.01662 0.93998 1.21259 0.93165 0.93718 1.13780 1.96725 1.27659 1.73363 1.98004 1.20372 0.96745 0.92529 0.93423 1.19438 0.95351 0.89180 1.16904 0.92244 0.92792 0.92787 0.72428 0.81036 0.81320 0.83431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.76 13.29 21.45 0.28 -52.47 16 2 C 0.02 0.86 5.46 84.66 0.46 1.32 16 3 Si 0.96 45.06 29.54 68.60 2.03 47.08 16 4 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 5 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 6 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 7 C -0.54 -31.51 8.92 25.60 0.23 -31.28 16 8 H 0.05 3.36 6.75 -2.91 -0.02 3.34 16 9 C 0.02 0.80 5.46 29.10 0.16 0.96 16 10 C 0.51 23.76 7.79 87.66 0.68 24.44 16 11 O -0.53 -28.89 14.19 -3.07 -0.04 -28.93 16 12 N -0.63 -22.40 5.44 -303.05 -1.65 -24.05 16 13 C 0.31 10.91 8.06 135.15 1.09 12.00 16 14 N -0.29 -10.87 10.79 -50.74 -0.55 -11.41 16 15 N -0.50 -13.00 7.36 -51.52 -0.38 -13.38 16 16 H 0.45 8.60 8.96 -213.49 -1.91 6.69 16 17 C 0.15 3.38 7.33 39.19 0.29 3.67 16 18 C -0.13 -1.84 10.03 22.14 0.22 -1.62 16 19 C -0.04 -0.48 9.69 22.07 0.21 -0.27 16 20 C -0.14 -2.39 6.18 22.07 0.14 -2.26 16 21 Br -0.04 -0.66 33.67 -20.37 -0.69 -1.35 16 22 C -0.01 -0.18 9.77 22.26 0.22 0.04 16 23 C -0.20 -5.24 6.37 -20.16 -0.13 -5.37 16 24 H 0.27 14.49 8.31 -92.70 -0.77 13.72 16 25 H 0.05 2.67 8.14 -2.38 -0.02 2.66 16 26 H 0.05 2.68 8.14 -2.39 -0.02 2.66 16 27 H 0.44 11.81 8.82 -92.71 -0.82 10.99 16 28 H 0.17 1.22 8.06 -2.91 -0.02 1.20 16 29 H 0.17 1.25 8.06 -2.91 -0.02 1.23 16 30 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 Total: -1.00 -74.15 293.98 1.07 -73.08 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -1.51 Total: 9.79 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: 3.57 Total: 1.63 kcal Atomic # 7 Polarization: -99.02 SS G_CDS: -2.29 Total: -101.31 kcal Atomic # 8 Polarization: -28.89 SS G_CDS: -0.04 Total: -28.93 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.08 kcal Atomic # 35 Polarization: -0.66 SS G_CDS: -0.69 Total: -1.35 kcal Total: -74.15 1.07 -73.08 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143189708.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.391 kcal (2) G-P(sol) polarization free energy of solvation -74.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds