Wall clock time and date at job start Tue Mar 31 2020 13:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31567 * 1 3 3 Si 1.86799 * 120.00509 * 2 1 4 4 H 1.48503 * 109.47076 * 239.99862 * 3 2 1 5 5 H 1.48503 * 109.46981 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47678 * 119.99648 * 3 2 1 7 7 C 1.38644 * 119.99608 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99638 * 180.02562 * 7 2 1 9 9 O 1.34813 * 120.00317 * 0.02562 * 7 2 1 10 10 C 1.35751 * 116.99950 * 185.06330 * 9 7 2 11 11 C 1.38772 * 120.10576 * 354.39607 * 10 9 7 12 12 C 1.38129 * 119.99981 * 179.97438 * 11 10 9 13 13 C 1.38364 * 120.20379 * 0.02562 * 12 11 10 14 14 C 1.38177 * 120.20431 * 359.95291 * 13 12 11 15 15 C 1.38726 * 119.99432 * 0.05017 * 14 13 12 16 16 N 1.40157 * 120.09719 * 180.24866 * 15 14 13 17 17 C 1.36237 * 126.07523 * 359.44230 * 16 15 14 18 18 C 1.35694 * 107.53694 * 179.84081 * 17 16 15 19 19 N 1.40796 * 126.06722 * 180.15862 * 18 17 16 20 20 C 1.40357 * 107.86592 * 0.41550 * 18 17 16 21 21 Br 1.89107 * 125.80888 * 179.77533 * 20 18 17 22 22 N 1.30953 * 108.38109 * 359.73972 * 20 18 17 23 23 H 0.97004 * 119.99395 * 0.02562 * 1 2 3 24 24 H 1.07997 * 119.99623 * 359.96134 * 11 10 9 25 25 H 1.08002 * 119.90110 * 180.02562 * 12 11 10 26 26 H 1.08001 * 119.89633 * 179.97438 * 13 12 11 27 27 H 1.07996 * 120.00101 * 180.02562 * 14 13 12 28 28 H 1.08006 * 126.23129 * 359.97438 * 17 16 15 29 29 H 0.96997 * 119.99808 * 180.27771 * 19 18 17 30 30 H 0.96997 * 119.99365 * 0.28197 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6176 0.0000 4 1 3.1036 1.6962 -1.2125 5 1 1.2849 2.7464 -0.0006 6 1 3.1035 1.6964 1.2124 7 6 2.0088 -1.2007 0.0005 8 1 3.0888 -1.2007 0.0010 9 8 1.3347 -2.3682 0.0005 10 6 2.0699 -3.5044 0.1078 11 6 3.4561 -3.4403 0.0942 12 6 4.2021 -4.5977 0.2040 13 6 3.5716 -5.8231 0.3273 14 6 2.1918 -5.8966 0.3423 15 6 1.4345 -4.7395 0.2325 16 7 0.0349 -4.8111 0.2527 17 6 -0.7088 -5.9471 0.3635 18 6 -2.0160 -5.5834 0.3467 19 7 -3.1196 -6.4526 0.4412 20 6 -2.0728 -4.1874 0.2126 21 35 -3.6499 -3.1473 0.1281 22 7 -0.8479 -3.7278 0.1566 23 1 -0.4849 0.8401 -0.0004 24 1 3.9516 -2.4856 -0.0025 25 1 5.2808 -4.5460 0.1936 26 1 4.1597 -6.7250 0.4125 27 1 1.7031 -6.8548 0.4391 28 1 -0.3274 -6.9538 0.4512 29 1 -4.0213 -6.0961 0.4158 30 1 -2.9780 -7.4079 0.5317 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212598497.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:45 Heat of formation + Delta-G solvation = 99.660340 kcal Electronic energy + Delta-G solvation = -18884.077089 eV Core-core repulsion = 15728.953287 eV Total energy + Delta-G solvation = -3155.123802 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 323.001 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.85268 -38.92597 -36.50518 -34.30320 -32.48199 -32.28923 -30.61845 -29.21093 -28.61538 -26.98235 -25.37658 -22.62506 -21.86831 -20.47865 -19.67254 -18.05227 -17.88718 -16.27706 -15.82475 -15.16020 -14.90005 -14.65764 -14.41841 -14.12559 -13.74570 -13.54577 -13.14434 -12.66517 -12.24405 -11.75286 -11.70347 -11.11604 -11.02609 -10.87051 -10.74768 -10.59392 -10.52865 -10.34627 -9.72496 -9.44676 -9.06743 -8.84931 -8.09524 -7.45981 -6.61109 -6.41745 -3.99544 1.53482 1.74044 2.19982 2.79505 3.12778 3.14320 3.14781 3.16883 3.23470 3.94117 4.37712 4.46886 4.92257 5.05970 5.14958 5.40951 5.54217 5.66868 5.91033 5.95479 6.07269 6.34936 6.46597 6.52550 6.87932 6.97064 7.18029 7.26116 7.46638 7.74325 7.86030 7.96066 8.04932 8.24665 8.97587 9.65181 10.70944 Molecular weight = 323.00amu Principal moments of inertia in cm(-1) A = 0.011038 B = 0.006710 C = 0.004182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2536.182024 B = 4171.577379 C = 6694.222586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.046 3.954 3 Si 0.938 3.062 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.401 4.401 8 H 0.091 0.909 9 O -0.127 6.127 10 C 0.145 3.855 11 C -0.221 4.221 12 C -0.074 4.074 13 C -0.201 4.201 14 C -0.085 4.085 15 C 0.066 3.934 16 N -0.276 5.276 17 C -0.047 4.047 18 C 0.086 3.914 19 N -0.872 5.872 20 C 0.005 3.995 21 Br 0.018 6.982 22 N -0.161 5.161 23 H 0.271 0.729 24 H 0.135 0.865 25 H 0.112 0.888 26 H 0.115 0.885 27 H 0.119 0.881 28 H 0.171 0.829 29 H 0.397 0.603 30 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.012 -10.438 0.808 11.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.162 4.162 3 Si 0.762 3.238 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.477 4.477 8 H 0.109 0.891 9 O -0.026 6.026 10 C 0.086 3.914 11 C -0.241 4.241 12 C -0.093 4.093 13 C -0.221 4.221 14 C -0.107 4.107 15 C -0.027 4.027 16 N -0.058 5.058 17 C -0.193 4.193 18 C -0.024 4.024 19 N -0.419 5.419 20 C -0.240 4.240 21 Br 0.099 6.901 22 N 0.014 4.986 23 H 0.081 0.919 24 H 0.152 0.848 25 H 0.131 0.869 26 H 0.133 0.867 27 H 0.137 0.863 28 H 0.189 0.811 29 H 0.225 0.775 30 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -4.230 -8.693 0.640 9.688 hybrid contribution 0.110 -0.386 0.119 0.419 sum -4.119 -9.079 0.759 9.999 Atomic orbital electron populations 1.70123 1.05684 1.27678 1.42378 1.25307 0.95834 0.98668 0.96368 0.85844 0.78821 0.79969 0.79155 1.19504 1.20212 1.19506 1.21367 0.91789 0.81035 1.53485 0.89117 1.84214 1.32946 1.10678 1.74785 1.18927 0.90302 0.87117 0.95036 1.21034 0.92584 0.99514 1.11007 1.20820 0.98825 0.92198 0.97457 1.20344 0.92929 0.97406 1.11415 1.20279 0.93847 0.94846 1.01685 1.16662 0.77120 0.93218 1.15727 1.45291 1.03794 1.03643 1.53039 1.21504 0.89269 0.92917 1.15615 1.17182 0.88123 0.88424 1.08712 1.41418 1.04495 1.06954 1.89067 1.23587 0.93823 0.91745 1.14869 1.96592 1.23989 1.71523 1.97980 1.78355 0.96225 1.07580 1.16444 0.91905 0.84771 0.86949 0.86722 0.86333 0.81135 0.77505 0.77756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.94 13.67 55.48 0.76 -23.19 16 2 C 0.05 1.26 5.49 -17.51 -0.10 1.16 16 3 Si 0.94 20.30 29.55 -169.99 -5.02 15.28 16 4 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 5 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 6 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 7 C -0.40 -11.06 9.49 30.88 0.29 -10.76 16 8 H 0.09 2.29 5.21 -52.48 -0.27 2.01 16 9 O -0.13 -3.60 7.83 0.09 0.00 -3.60 16 10 C 0.14 3.53 6.66 -38.93 -0.26 3.27 16 11 C -0.22 -4.66 9.16 -39.42 -0.36 -5.03 16 12 C -0.07 -1.28 10.04 -39.57 -0.40 -1.68 16 13 C -0.20 -3.25 10.04 -39.56 -0.40 -3.65 16 14 C -0.09 -1.49 9.46 -39.42 -0.37 -1.86 16 15 C 0.07 1.44 6.71 -83.41 -0.56 0.88 16 16 N -0.28 -6.06 3.83 -10.26 -0.04 -6.09 16 17 C -0.05 -0.83 10.86 -16.51 -0.18 -1.01 16 18 C 0.09 1.50 7.24 -83.85 -0.61 0.89 16 19 N -0.87 -10.90 9.20 32.32 0.30 -10.60 16 20 C 0.01 0.11 7.72 -17.13 -0.13 -0.02 16 21 Br 0.02 0.32 33.83 -68.01 -2.30 -1.98 16 22 N -0.16 -3.97 10.61 32.01 0.34 -3.63 16 23 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 24 H 0.13 2.79 5.64 -52.49 -0.30 2.49 16 25 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 26 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 27 H 0.12 1.67 6.75 -52.49 -0.35 1.31 16 28 H 0.17 2.26 7.07 -52.48 -0.37 1.89 16 29 H 0.40 4.55 8.67 -40.82 -0.35 4.19 16 30 H 0.39 3.76 8.96 -40.82 -0.37 3.39 16 LS Contribution 289.42 15.07 4.36 4.36 Total: -1.00 -32.21 289.42 -6.67 -38.88 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -1.99 Total: 8.38 kcal Atomic # 6 Polarization: -14.74 SS G_CDS: -3.07 Total: -17.81 kcal Atomic # 7 Polarization: -44.87 SS G_CDS: 1.36 Total: -43.51 kcal Atomic # 8 Polarization: -3.60 SS G_CDS: 0.00 Total: -3.60 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Atomic # 35 Polarization: 0.32 SS G_CDS: -2.30 Total: -1.98 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -32.21 -6.67 -38.88 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212598497.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.536 kcal (2) G-P(sol) polarization free energy of solvation -32.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds