Wall clock time and date at job start Tue Mar 31 2020 13:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31567 * 1 3 3 Si 1.86799 * 120.00509 * 2 1 4 4 H 1.48503 * 109.47076 * 239.99862 * 3 2 1 5 5 H 1.48503 * 109.46981 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47678 * 119.99648 * 3 2 1 7 7 C 1.38644 * 119.99608 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99638 * 180.02562 * 7 2 1 9 9 O 1.34813 * 120.00317 * 0.02562 * 7 2 1 10 10 C 1.35751 * 116.99950 * 185.06330 * 9 7 2 11 11 C 1.38772 * 120.10576 * 354.39607 * 10 9 7 12 12 C 1.38129 * 119.99981 * 179.97438 * 11 10 9 13 13 C 1.38364 * 120.20379 * 0.02562 * 12 11 10 14 14 C 1.38177 * 120.20431 * 359.95291 * 13 12 11 15 15 C 1.38726 * 119.99432 * 0.05017 * 14 13 12 16 16 N 1.40157 * 120.09719 * 180.24866 * 15 14 13 17 17 C 1.36237 * 126.07523 * 359.44230 * 16 15 14 18 18 C 1.35694 * 107.53694 * 179.84081 * 17 16 15 19 19 N 1.40796 * 126.06722 * 180.15862 * 18 17 16 20 20 C 1.40357 * 107.86592 * 0.41550 * 18 17 16 21 21 Br 1.89107 * 125.80888 * 179.77533 * 20 18 17 22 22 N 1.30953 * 108.38109 * 359.73972 * 20 18 17 23 23 H 0.97004 * 119.99395 * 0.02562 * 1 2 3 24 24 H 1.07997 * 119.99623 * 359.96134 * 11 10 9 25 25 H 1.08002 * 119.90110 * 180.02562 * 12 11 10 26 26 H 1.08001 * 119.89633 * 179.97438 * 13 12 11 27 27 H 1.07996 * 120.00101 * 180.02562 * 14 13 12 28 28 H 1.08006 * 126.23129 * 359.97438 * 17 16 15 29 29 H 0.96997 * 119.99808 * 180.27771 * 19 18 17 30 30 H 0.96997 * 119.99365 * 0.28197 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6176 0.0000 4 1 3.1036 1.6962 -1.2125 5 1 1.2849 2.7464 -0.0006 6 1 3.1035 1.6964 1.2124 7 6 2.0088 -1.2007 0.0005 8 1 3.0888 -1.2007 0.0010 9 8 1.3347 -2.3682 0.0005 10 6 2.0699 -3.5044 0.1078 11 6 3.4561 -3.4403 0.0942 12 6 4.2021 -4.5977 0.2040 13 6 3.5716 -5.8231 0.3273 14 6 2.1918 -5.8966 0.3423 15 6 1.4345 -4.7395 0.2325 16 7 0.0349 -4.8111 0.2527 17 6 -0.7088 -5.9471 0.3635 18 6 -2.0160 -5.5834 0.3467 19 7 -3.1196 -6.4526 0.4412 20 6 -2.0728 -4.1874 0.2126 21 35 -3.6499 -3.1473 0.1281 22 7 -0.8479 -3.7278 0.1566 23 1 -0.4849 0.8401 -0.0004 24 1 3.9516 -2.4856 -0.0025 25 1 5.2808 -4.5460 0.1936 26 1 4.1597 -6.7250 0.4125 27 1 1.7031 -6.8548 0.4391 28 1 -0.3274 -6.9538 0.4512 29 1 -4.0213 -6.0961 0.4158 30 1 -2.9780 -7.4079 0.5317 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212598497.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:44 Heat of formation + Delta-G solvation = 76.644524 kcal Electronic energy + Delta-G solvation = -18885.075130 eV Core-core repulsion = 15728.953287 eV Total energy + Delta-G solvation = -3156.121842 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 323.001 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.34138 -40.54731 -38.14599 -35.60508 -34.22968 -33.89103 -32.10135 -30.75551 -30.09145 -28.41649 -27.26141 -24.10474 -23.45822 -21.95801 -21.14506 -19.77589 -19.44491 -17.93251 -16.95705 -16.57838 -16.45743 -16.32880 -15.93276 -15.66647 -15.27953 -15.18618 -14.68673 -14.30270 -13.64853 -13.48959 -13.32764 -12.66620 -12.60348 -12.35313 -12.23185 -12.16972 -11.87871 -11.85132 -11.28580 -11.13351 -10.74899 -10.59629 -9.55647 -9.00119 -8.34732 -8.01289 -6.02179 0.04517 0.25038 0.66948 1.28797 1.34780 1.45568 1.50197 1.74383 1.81139 2.19311 2.87027 3.20033 3.20940 3.42332 3.60471 4.07186 4.22633 4.27682 4.49981 4.55495 4.67057 4.82789 5.03085 5.05695 5.20083 5.48669 5.56616 5.73000 5.99238 6.05149 6.37145 6.63207 6.65134 7.03954 7.23281 7.85416 8.82792 Molecular weight = 323.00amu Principal moments of inertia in cm(-1) A = 0.011038 B = 0.006710 C = 0.004182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2536.182024 B = 4171.577379 C = 6694.222586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C -0.014 4.014 3 Si 1.011 2.989 4 H -0.259 1.259 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.425 4.425 8 H 0.099 0.901 9 O -0.181 6.181 10 C 0.100 3.900 11 C -0.236 4.236 12 C -0.071 4.071 13 C -0.168 4.168 14 C -0.081 4.081 15 C 0.047 3.953 16 N -0.292 5.292 17 C -0.041 4.041 18 C 0.092 3.908 19 N -0.853 5.853 20 C -0.013 4.013 21 Br 0.029 6.971 22 N -0.235 5.235 23 H 0.267 0.733 24 H 0.124 0.876 25 H 0.153 0.847 26 H 0.168 0.832 27 H 0.163 0.837 28 H 0.220 0.780 29 H 0.403 0.597 30 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.141 -14.111 1.193 14.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.215 4.215 3 Si 0.831 3.169 4 H -0.183 1.183 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.502 4.502 8 H 0.116 0.884 9 O -0.084 6.084 10 C 0.046 3.954 11 C -0.256 4.256 12 C -0.089 4.089 13 C -0.187 4.187 14 C -0.102 4.102 15 C -0.046 4.046 16 N -0.074 5.074 17 C -0.187 4.187 18 C -0.020 4.020 19 N -0.402 5.402 20 C -0.258 4.258 21 Br 0.110 6.890 22 N -0.060 5.060 23 H 0.076 0.924 24 H 0.142 0.858 25 H 0.171 0.829 26 H 0.186 0.814 27 H 0.180 0.820 28 H 0.237 0.763 29 H 0.232 0.768 30 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -2.339 -12.452 1.029 12.712 hybrid contribution -0.368 0.278 0.031 0.462 sum -2.707 -12.175 1.060 12.517 Atomic orbital electron populations 1.70306 1.07584 1.28087 1.46292 1.26470 0.96763 1.02259 0.96008 0.84764 0.77450 0.74973 0.79686 1.18349 1.19960 1.18420 1.21808 0.92383 0.81957 1.54006 0.88360 1.84223 1.34013 1.11455 1.78726 1.19692 0.91935 0.87472 0.96311 1.21218 0.91820 1.00981 1.11541 1.21309 1.00756 0.91235 0.95644 1.21064 0.92734 0.98683 1.06240 1.20881 0.94434 0.94985 0.99851 1.17325 0.77866 0.93807 1.15587 1.45413 1.03885 1.04248 1.53885 1.22294 0.88854 0.93583 1.13938 1.17311 0.89537 0.87490 1.07684 1.41349 1.03521 1.07358 1.88016 1.24088 0.93642 0.93706 1.14404 1.96557 1.22510 1.71972 1.97929 1.78309 0.98047 1.10310 1.19380 0.92366 0.85806 0.82931 0.81416 0.81954 0.76318 0.76765 0.75559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -55.44 13.67 21.61 0.30 -55.14 16 2 C -0.01 -0.83 5.49 84.83 0.47 -0.37 16 3 Si 1.01 43.93 29.55 68.60 2.03 45.96 16 4 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 5 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 6 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 7 C -0.43 -25.10 9.49 67.92 0.64 -24.45 16 8 H 0.10 5.29 5.21 -2.91 -0.02 5.27 16 9 O -0.18 -11.00 7.83 -22.58 -0.18 -11.17 16 10 C 0.10 5.05 6.66 22.69 0.15 5.20 16 11 C -0.24 -9.93 9.16 22.37 0.21 -9.73 16 12 C -0.07 -2.18 10.04 22.27 0.22 -1.96 16 13 C -0.17 -4.43 10.04 22.29 0.22 -4.21 16 14 C -0.08 -2.46 9.46 22.37 0.21 -2.24 16 15 C 0.05 2.03 6.71 38.22 0.26 2.28 16 16 N -0.29 -12.81 3.83 -186.37 -0.71 -13.52 16 17 C -0.04 -1.35 10.86 83.42 0.91 -0.44 16 18 C 0.09 3.06 7.24 37.63 0.27 3.33 16 19 N -0.85 -19.13 9.20 -51.66 -0.48 -19.61 16 20 C -0.01 -0.56 7.72 85.34 0.66 0.10 16 21 Br 0.03 1.09 33.83 -20.37 -0.69 0.40 16 22 N -0.24 -12.14 10.61 -52.64 -0.56 -12.70 16 23 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 24 H 0.12 5.33 5.64 -2.91 -0.02 5.31 16 25 H 0.15 3.47 8.06 -2.91 -0.02 3.45 16 26 H 0.17 2.83 8.06 -2.91 -0.02 2.80 16 27 H 0.16 3.46 6.75 -2.91 -0.02 3.44 16 28 H 0.22 4.61 7.07 -2.91 -0.02 4.59 16 29 H 0.40 8.41 8.67 -92.71 -0.80 7.61 16 30 H 0.41 6.32 8.96 -92.71 -0.83 5.49 16 Total: -1.00 -79.77 289.42 3.53 -76.24 By element: Atomic # 1 Polarization: 22.43 SS G_CDS: -0.40 Total: 22.02 kcal Atomic # 6 Polarization: -36.71 SS G_CDS: 4.22 Total: -32.49 kcal Atomic # 7 Polarization: -99.51 SS G_CDS: -1.45 Total: -100.96 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: -0.18 Total: -11.17 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Atomic # 35 Polarization: 1.09 SS G_CDS: -0.69 Total: 0.40 kcal Total: -79.77 3.53 -76.24 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212598497.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.885 kcal (2) G-P(sol) polarization free energy of solvation -79.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds