Wall clock time and date at job start Tue Mar 31 2020 13:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 120.00414 * 2 1 4 4 H 1.48503 * 109.46898 * 274.28241 * 3 2 1 5 5 H 1.48500 * 109.46907 * 34.27732 * 3 2 1 6 6 H 1.48493 * 109.46863 * 154.27854 * 3 2 1 7 7 C 1.37883 * 119.99959 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99781 * 350.41227 * 7 2 1 9 9 C 1.50697 * 120.00023 * 170.41909 * 7 2 1 10 10 H 1.08995 * 109.47581 * 354.92281 * 9 7 2 11 11 O 1.42904 * 109.46738 * 234.92404 * 9 7 2 12 12 C 1.35955 * 116.99898 * 87.86791 * 11 9 7 13 13 C 1.39072 * 120.46061 * 354.49755 * 12 11 9 14 14 C 1.38558 * 118.40095 * 179.73533 * 13 12 11 15 15 C 1.38350 * 119.23794 * 0.51131 * 14 13 12 16 16 Cl 1.73601 * 119.57115 * 179.76509 * 15 14 13 17 17 N 1.31975 * 120.86463 * 359.75113 * 15 14 13 18 18 C 1.31947 * 121.74035 * 359.97438 * 17 15 14 19 19 Cl 1.73603 * 119.66168 * 180.02562 * 18 17 15 20 20 C 1.50698 * 109.47178 * 114.92945 * 9 7 2 21 21 C 1.38239 * 119.99545 * 261.62602 * 20 9 7 22 22 C 1.38242 * 119.99912 * 179.97438 * 21 20 9 23 23 C 1.38237 * 119.99688 * 359.97438 * 22 21 20 24 24 C 1.38235 * 120.00121 * 0.06845 * 23 22 21 25 25 C 1.38228 * 120.00244 * 359.88466 * 24 23 22 26 26 H 0.97002 * 119.99772 * 359.97438 * 1 2 3 27 27 H 1.07995 * 120.79891 * 359.97438 * 13 12 11 28 28 H 1.08003 * 120.38057 * 180.26650 * 14 13 12 29 29 H 1.08000 * 120.00301 * 359.96920 * 21 20 9 30 30 H 1.07996 * 120.00102 * 179.72139 * 22 21 20 31 31 H 1.07997 * 119.99297 * 179.97438 * 23 22 21 32 32 H 1.07995 * 119.99807 * 180.02562 * 24 23 22 33 33 H 1.07999 * 120.00417 * 180.10536 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4062 2.0986 -1.3962 5 1 1.4949 2.6249 0.7885 6 1 3.5890 1.4156 0.6076 7 6 2.0045 -1.1941 -0.0005 8 1 1.4758 -2.1230 0.1548 9 6 3.4957 -1.2031 -0.2178 10 1 3.8360 -0.1928 -0.4445 11 8 3.8127 -2.0688 -1.3096 12 6 3.7996 -1.5224 -2.5545 13 6 3.3787 -0.2106 -2.7442 14 6 3.3879 0.3050 -4.0302 15 6 3.8019 -0.4986 -5.0775 16 17 3.8109 0.1366 -6.6931 17 7 4.1903 -1.7418 -4.8645 18 6 4.2013 -2.2678 -3.6545 19 17 4.7233 -3.9090 -3.4359 20 6 4.1821 -1.6963 1.0299 21 6 4.7173 -0.7916 1.9278 22 6 5.3465 -1.2439 3.0726 23 6 5.4401 -2.6008 3.3197 24 6 4.9056 -3.5054 2.4213 25 6 4.2756 -3.0532 1.2771 26 1 -0.4850 0.8401 0.0004 27 1 3.0562 0.3930 -1.9087 28 1 3.0716 1.3213 -4.2135 29 1 4.6440 0.2685 1.7349 30 1 5.7686 -0.5374 3.7718 31 1 5.9320 -2.9541 4.2138 32 1 4.9783 -4.5654 2.6146 33 1 3.8566 -3.7598 0.5761 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229090555.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:16 Heat of formation + Delta-G solvation = 16.962958 kcal Electronic energy + Delta-G solvation = -22117.033883 eV Core-core repulsion = 18581.168153 eV Total energy + Delta-G solvation = -3535.865730 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 323.022 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.43404 -38.91777 -37.56724 -36.52420 -36.14719 -33.37788 -32.18628 -31.61250 -30.41496 -29.55292 -27.65544 -24.00533 -23.51799 -22.66461 -22.03876 -20.37507 -18.24141 -17.44922 -17.21078 -16.90687 -16.15019 -15.30164 -14.86934 -14.68298 -14.58416 -14.28861 -13.69794 -13.47453 -13.26359 -13.09532 -12.94566 -12.42660 -12.31346 -12.03233 -11.59876 -11.38628 -11.24638 -11.06000 -10.93791 -10.87540 -10.69368 -10.26700 -10.06852 -9.81874 -9.61418 -9.47930 -9.08956 -8.42456 -8.17178 -7.82323 -6.60936 -4.64655 1.04476 1.28675 1.72325 1.86533 1.91530 2.29618 2.78654 2.89371 2.97492 3.60251 3.68856 3.85766 4.33609 4.71263 4.76598 4.97088 5.03395 5.24128 5.35562 5.37982 5.51712 5.66413 5.79056 5.90915 6.03160 6.10585 6.16652 6.33875 6.47105 6.56352 6.93441 6.95925 6.99420 7.17727 7.50391 7.54179 7.77184 8.01329 8.55331 8.95900 10.50165 Molecular weight = 323.02amu Principal moments of inertia in cm(-1) A = 0.012161 B = 0.005395 C = 0.004194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.934307 B = 5189.004508 C = 6675.083785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.087 3.913 3 Si 0.841 3.159 4 H -0.262 1.262 5 H -0.272 1.272 6 H -0.250 1.250 7 C -0.532 4.532 8 H 0.092 0.908 9 C 0.203 3.797 10 H 0.048 0.952 11 O -0.293 6.293 12 C 0.152 3.848 13 C -0.146 4.146 14 C -0.106 4.106 15 C 0.132 3.868 16 Cl -0.037 7.037 17 N -0.439 5.439 18 C 0.141 3.859 19 Cl -0.018 7.018 20 C -0.038 4.038 21 C -0.126 4.126 22 C -0.122 4.122 23 C -0.140 4.140 24 C -0.124 4.124 25 C -0.099 4.099 26 H 0.274 0.726 27 H 0.158 0.842 28 H 0.148 0.852 29 H 0.118 0.882 30 H 0.115 0.885 31 H 0.113 0.887 32 H 0.115 0.885 33 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.884 0.523 -2.433 9.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.121 4.121 3 Si 0.667 3.333 4 H -0.188 1.188 5 H -0.197 1.197 6 H -0.175 1.175 7 C -0.568 4.568 8 H 0.110 0.890 9 C 0.149 3.851 10 H 0.066 0.934 11 O -0.203 6.203 12 C 0.099 3.901 13 C -0.172 4.172 14 C -0.127 4.127 15 C -0.033 4.033 16 Cl -0.009 7.009 17 N -0.152 5.152 18 C -0.025 4.025 19 Cl 0.011 6.989 20 C -0.039 4.039 21 C -0.144 4.144 22 C -0.140 4.140 23 C -0.158 4.158 24 C -0.142 4.142 25 C -0.117 4.117 26 H 0.085 0.915 27 H 0.175 0.825 28 H 0.166 0.834 29 H 0.136 0.864 30 H 0.133 0.867 31 H 0.131 0.869 32 H 0.133 0.867 33 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 9.041 -0.166 -3.144 9.574 hybrid contribution -0.198 1.555 0.650 1.697 sum 8.844 1.389 -2.494 9.293 Atomic orbital electron populations 1.69859 1.06152 1.27947 1.45252 1.25068 0.94826 0.98663 0.93503 0.87559 0.81581 0.84690 0.79462 1.18793 1.19690 1.17503 1.21162 0.88359 0.96259 1.51021 0.89040 1.19633 0.96040 0.89051 0.80345 0.93428 1.86263 1.81681 1.41154 1.11249 1.19503 0.92191 0.91169 0.87231 1.22043 1.01332 0.95278 0.98569 1.21701 0.98711 1.01253 0.91000 1.20975 1.04702 0.90223 0.87368 1.98369 1.97207 1.84201 1.21122 1.66111 1.14353 1.12365 1.22413 1.20532 1.05295 0.89536 0.87123 1.98380 1.88664 1.15549 1.96338 1.19863 0.93931 0.93724 0.96346 1.20993 0.98889 0.99450 0.95069 1.20945 1.00269 0.95572 0.97216 1.20956 1.01910 0.93429 0.99521 1.21070 0.99185 0.99076 0.94832 1.20968 0.98335 0.95415 0.96948 0.91524 0.82480 0.83421 0.86436 0.86744 0.86939 0.86716 0.85787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.16 13.96 55.43 0.77 -22.39 16 2 C 0.09 2.18 5.30 -17.82 -0.09 2.09 16 3 Si 0.84 17.63 24.73 -169.99 -4.20 13.43 16 4 H -0.26 -5.10 6.56 56.52 0.37 -4.73 16 5 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 6 H -0.25 -4.85 4.81 56.52 0.27 -4.58 16 7 C -0.53 -13.32 8.82 -34.44 -0.30 -13.62 16 8 H 0.09 2.57 8.06 -52.48 -0.42 2.15 16 9 C 0.20 4.38 1.85 -29.04 -0.05 4.33 16 10 H 0.05 1.01 3.40 -51.93 -0.18 0.83 16 11 O -0.29 -6.15 8.51 -19.60 -0.17 -6.32 16 12 C 0.15 3.03 6.63 -39.06 -0.26 2.77 16 13 C -0.15 -2.81 8.88 -39.15 -0.35 -3.16 16 14 C -0.11 -1.76 9.87 -39.42 -0.39 -2.15 16 15 C 0.13 2.21 7.27 -17.45 -0.13 2.09 16 16 Cl -0.04 -0.52 29.10 -51.86 -1.51 -2.03 16 17 N -0.44 -8.03 10.31 -7.39 -0.08 -8.10 16 18 C 0.14 2.66 7.29 -17.29 -0.13 2.54 16 19 Cl -0.02 -0.30 28.66 -51.86 -1.49 -1.79 16 20 C -0.04 -0.76 4.96 -104.62 -0.52 -1.28 16 21 C -0.13 -2.30 9.67 -39.58 -0.38 -2.68 16 22 C -0.12 -1.91 10.05 -39.58 -0.40 -2.30 16 23 C -0.14 -2.07 10.05 -39.58 -0.40 -2.47 16 24 C -0.12 -1.95 10.05 -39.59 -0.40 -2.35 16 25 C -0.10 -1.83 9.36 -39.59 -0.37 -2.20 16 26 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 27 H 0.16 3.18 1.87 -52.49 -0.10 3.08 16 28 H 0.15 2.03 8.06 -52.48 -0.42 1.61 16 29 H 0.12 2.09 6.25 -52.49 -0.33 1.76 16 30 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 31 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 32 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 33 H 0.12 2.30 7.73 -52.49 -0.41 1.90 16 LS Contribution 311.63 15.07 4.70 4.70 Total: -1.00 -26.12 311.63 -8.56 -34.68 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -2.42 Total: 6.23 kcal Atomic # 6 Polarization: -14.24 SS G_CDS: -4.17 Total: -18.40 kcal Atomic # 7 Polarization: -31.19 SS G_CDS: 0.70 Total: -30.49 kcal Atomic # 8 Polarization: -6.15 SS G_CDS: -0.17 Total: -6.32 kcal Atomic # 14 Polarization: 17.63 SS G_CDS: -4.20 Total: 13.43 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -3.00 Total: -3.82 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -26.12 -8.56 -34.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229090555.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.640 kcal (2) G-P(sol) polarization free energy of solvation -26.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds