Wall clock time and date at job start Tue Mar 31 2020 13:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 120.00414 * 2 1 4 4 H 1.48503 * 109.46898 * 274.28241 * 3 2 1 5 5 H 1.48500 * 109.46907 * 34.27732 * 3 2 1 6 6 H 1.48493 * 109.46863 * 154.27854 * 3 2 1 7 7 C 1.37883 * 119.99959 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99781 * 350.41227 * 7 2 1 9 9 C 1.50697 * 120.00023 * 170.41909 * 7 2 1 10 10 H 1.08995 * 109.47581 * 354.92281 * 9 7 2 11 11 O 1.42904 * 109.46738 * 234.92404 * 9 7 2 12 12 C 1.35955 * 116.99898 * 87.86791 * 11 9 7 13 13 C 1.39072 * 120.46061 * 354.49755 * 12 11 9 14 14 C 1.38558 * 118.40095 * 179.73533 * 13 12 11 15 15 C 1.38350 * 119.23794 * 0.51131 * 14 13 12 16 16 Cl 1.73601 * 119.57115 * 179.76509 * 15 14 13 17 17 N 1.31975 * 120.86463 * 359.75113 * 15 14 13 18 18 C 1.31947 * 121.74035 * 359.97438 * 17 15 14 19 19 Cl 1.73603 * 119.66168 * 180.02562 * 18 17 15 20 20 C 1.50698 * 109.47178 * 114.92945 * 9 7 2 21 21 C 1.38239 * 119.99545 * 261.62602 * 20 9 7 22 22 C 1.38242 * 119.99912 * 179.97438 * 21 20 9 23 23 C 1.38237 * 119.99688 * 359.97438 * 22 21 20 24 24 C 1.38235 * 120.00121 * 0.06845 * 23 22 21 25 25 C 1.38228 * 120.00244 * 359.88466 * 24 23 22 26 26 H 0.97002 * 119.99772 * 359.97438 * 1 2 3 27 27 H 1.07995 * 120.79891 * 359.97438 * 13 12 11 28 28 H 1.08003 * 120.38057 * 180.26650 * 14 13 12 29 29 H 1.08000 * 120.00301 * 359.96920 * 21 20 9 30 30 H 1.07996 * 120.00102 * 179.72139 * 22 21 20 31 31 H 1.07997 * 119.99297 * 179.97438 * 23 22 21 32 32 H 1.07995 * 119.99807 * 180.02562 * 24 23 22 33 33 H 1.07999 * 120.00417 * 180.10536 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4062 2.0986 -1.3962 5 1 1.4949 2.6249 0.7885 6 1 3.5890 1.4156 0.6076 7 6 2.0045 -1.1941 -0.0005 8 1 1.4758 -2.1230 0.1548 9 6 3.4957 -1.2031 -0.2178 10 1 3.8360 -0.1928 -0.4445 11 8 3.8127 -2.0688 -1.3096 12 6 3.7996 -1.5224 -2.5545 13 6 3.3787 -0.2106 -2.7442 14 6 3.3879 0.3050 -4.0302 15 6 3.8019 -0.4986 -5.0775 16 17 3.8109 0.1366 -6.6931 17 7 4.1903 -1.7418 -4.8645 18 6 4.2013 -2.2678 -3.6545 19 17 4.7233 -3.9090 -3.4359 20 6 4.1821 -1.6963 1.0299 21 6 4.7173 -0.7916 1.9278 22 6 5.3465 -1.2439 3.0726 23 6 5.4401 -2.6008 3.3197 24 6 4.9056 -3.5054 2.4213 25 6 4.2756 -3.0532 1.2771 26 1 -0.4850 0.8401 0.0004 27 1 3.0562 0.3930 -1.9087 28 1 3.0716 1.3213 -4.2135 29 1 4.6440 0.2685 1.7349 30 1 5.7686 -0.5374 3.7718 31 1 5.9320 -2.9541 4.2138 32 1 4.9783 -4.5654 2.6146 33 1 3.8566 -3.7598 0.5761 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229090555.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:16 Heat of formation + Delta-G solvation = 3.094626 kcal Electronic energy + Delta-G solvation = -22117.635259 eV Core-core repulsion = 18581.168153 eV Total energy + Delta-G solvation = -3536.467106 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 323.022 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.89978 -40.30766 -38.99982 -37.86295 -37.48202 -35.18036 -33.61580 -33.15314 -31.71555 -30.97376 -29.30021 -25.62935 -24.95709 -24.12118 -23.35615 -21.82394 -19.82597 -19.21187 -18.64242 -18.34960 -17.47266 -16.89273 -16.32639 -16.09292 -15.96276 -15.67860 -15.17693 -14.95583 -14.89137 -14.70012 -14.24938 -13.84633 -13.67317 -13.38220 -13.19027 -12.72528 -12.68407 -12.54722 -12.28548 -12.19477 -12.06795 -11.87427 -11.66568 -11.41452 -11.06966 -10.96463 -10.86253 -9.72588 -9.54415 -9.31253 -8.51738 -6.62021 -0.37162 -0.16948 0.37235 0.54066 0.60589 0.91880 1.14196 1.23063 1.30711 2.07207 2.10586 2.25542 2.87316 3.03985 3.30245 3.53943 3.64575 3.84225 3.95990 4.15751 4.22425 4.30247 4.38907 4.46238 4.70490 4.79027 4.80742 4.90775 5.10498 5.21487 5.25579 5.65453 5.69389 5.78666 5.91898 6.14584 6.22178 6.33327 6.52866 7.04202 8.63836 Molecular weight = 323.02amu Principal moments of inertia in cm(-1) A = 0.012161 B = 0.005395 C = 0.004194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.934307 B = 5189.004508 C = 6675.083785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.040 3.960 3 Si 0.890 3.110 4 H -0.235 1.235 5 H -0.273 1.273 6 H -0.227 1.227 7 C -0.538 4.538 8 H 0.039 0.961 9 C 0.213 3.787 10 H 0.055 0.945 11 O -0.302 6.302 12 C 0.126 3.874 13 C -0.159 4.159 14 C -0.097 4.097 15 C 0.133 3.867 16 Cl -0.006 7.006 17 N -0.447 5.447 18 C 0.134 3.866 19 Cl -0.008 7.008 20 C -0.071 4.071 21 C -0.142 4.142 22 C -0.118 4.118 23 C -0.130 4.130 24 C -0.123 4.123 25 C -0.120 4.120 26 H 0.276 0.724 27 H 0.149 0.851 28 H 0.181 0.819 29 H 0.120 0.880 30 H 0.150 0.850 31 H 0.153 0.847 32 H 0.142 0.858 33 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.254 1.860 -2.155 11.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.163 4.163 3 Si 0.712 3.288 4 H -0.159 1.159 5 H -0.198 1.198 6 H -0.150 1.150 7 C -0.575 4.575 8 H 0.057 0.943 9 C 0.159 3.841 10 H 0.072 0.928 11 O -0.213 6.213 12 C 0.074 3.926 13 C -0.185 4.185 14 C -0.117 4.117 15 C -0.032 4.032 16 Cl 0.022 6.978 17 N -0.161 5.161 18 C -0.031 4.031 19 Cl 0.020 6.980 20 C -0.072 4.072 21 C -0.160 4.160 22 C -0.136 4.136 23 C -0.148 4.148 24 C -0.141 4.141 25 C -0.138 4.138 26 H 0.086 0.914 27 H 0.166 0.834 28 H 0.199 0.801 29 H 0.138 0.862 30 H 0.168 0.832 31 H 0.171 0.829 32 H 0.160 0.840 33 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 11.436 1.151 -2.883 11.850 hybrid contribution -0.903 1.017 0.490 1.446 sum 10.533 2.168 -2.393 11.017 Atomic orbital electron populations 1.70007 1.08182 1.29064 1.47663 1.25842 0.95423 1.02375 0.92650 0.86733 0.81228 0.79643 0.81220 1.15919 1.19795 1.15021 1.21152 0.90545 0.94458 1.51346 0.94314 1.19444 0.93828 0.89660 0.81190 0.92785 1.86205 1.82199 1.41151 1.11762 1.19754 0.93704 0.92080 0.87065 1.22098 1.01857 0.95030 0.99552 1.22007 0.97353 1.02581 0.89754 1.21321 1.03227 0.89751 0.88895 1.98383 1.96979 1.83629 1.18784 1.66228 1.14740 1.13165 1.21928 1.20597 1.05388 0.90063 0.87098 1.98373 1.88514 1.14721 1.96363 1.19920 0.96063 0.94869 0.96319 1.21171 0.99633 0.99301 0.95910 1.21376 0.98877 0.96842 0.96513 1.21449 1.00340 0.92905 1.00101 1.21411 0.97972 1.00982 0.93728 1.21001 0.99713 0.94848 0.98281 0.91401 0.83370 0.80124 0.86248 0.83229 0.82896 0.83974 0.87446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.69 13.96 21.45 0.30 -51.39 16 2 C 0.04 2.07 5.30 84.66 0.45 2.52 16 3 Si 0.89 35.97 24.73 68.60 1.70 37.67 16 4 H -0.23 -8.40 6.56 99.48 0.65 -7.75 16 5 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 6 H -0.23 -8.22 4.81 99.48 0.48 -7.74 16 7 C -0.54 -28.54 8.82 25.60 0.23 -28.31 16 8 H 0.04 2.38 8.06 -2.91 -0.02 2.36 16 9 C 0.21 9.48 1.85 29.10 0.05 9.53 16 10 H 0.05 2.29 3.40 -2.39 -0.01 2.28 16 11 O -0.30 -13.21 8.51 -93.05 -0.79 -14.01 16 12 C 0.13 5.10 6.63 22.61 0.15 5.25 16 13 C -0.16 -6.04 8.88 22.55 0.20 -5.84 16 14 C -0.10 -3.02 9.87 22.37 0.22 -2.80 16 15 C 0.13 4.22 7.27 84.70 0.62 4.84 16 16 Cl -0.01 -0.16 29.10 -2.72 -0.08 -0.23 16 17 N -0.45 -15.92 10.31 -177.29 -1.83 -17.75 16 18 C 0.13 5.07 7.29 84.81 0.62 5.68 16 19 Cl -0.01 -0.28 28.66 -2.72 -0.08 -0.36 16 20 C -0.07 -2.90 4.96 -19.86 -0.10 -3.00 16 21 C -0.14 -5.02 9.67 22.27 0.22 -4.80 16 22 C -0.12 -3.32 10.05 22.27 0.22 -3.10 16 23 C -0.13 -3.38 10.05 22.27 0.22 -3.16 16 24 C -0.12 -3.67 10.05 22.27 0.22 -3.45 16 25 C -0.12 -4.55 9.36 22.27 0.21 -4.34 16 26 H 0.28 14.45 8.31 -92.71 -0.77 13.68 16 27 H 0.15 5.89 1.87 -2.91 -0.01 5.88 16 28 H 0.18 4.35 8.06 -2.91 -0.02 4.33 16 29 H 0.12 4.05 6.25 -2.91 -0.02 4.03 16 30 H 0.15 3.11 8.06 -2.91 -0.02 3.09 16 31 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 32 H 0.14 3.36 8.06 -2.91 -0.02 3.34 16 33 H 0.11 4.27 7.73 -2.91 -0.02 4.25 16 Total: -1.00 -60.47 311.63 3.64 -56.83 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: 0.90 Total: 20.20 kcal Atomic # 6 Polarization: -34.49 SS G_CDS: 3.53 Total: -30.96 kcal Atomic # 7 Polarization: -67.61 SS G_CDS: -1.53 Total: -69.14 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: -0.79 Total: -14.01 kcal Atomic # 14 Polarization: 35.97 SS G_CDS: 1.70 Total: 37.67 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -0.16 Total: -0.59 kcal Total: -60.47 3.64 -56.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229090555.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.925 kcal (2) G-P(sol) polarization free energy of solvation -60.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds